HHsearch alignment for GI: 254780271 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.66 E-value=4.9e-07 Score=69.85 Aligned_cols=101 Identities=31% Similarity=0.420 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEE-------EHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---85313-------1012211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFT-------MADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~-------~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
T Consensus 206 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRG-efEeRlk~vi~e----~~~~~~~ 280 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQ----LEQDTNS 280 (758)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCH-HHHHHHHHHHHH----HHHCCCE
T ss_conf 25896021699986999999999999738997655898899845877861686415-499999999999----9857985
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 333223332002333333443210256898875310587010
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
T Consensus 281 ILFIDEiH~ivGaG~~~gg~~-----DaaNlLKP~LarG~l~ 317 (758)
T PRK11034 281 ILFIDEIHTIIGAGAASGGQV-----DAANLIKPLLSSGKIR 317 (758)
T ss_pred EEEEECHHHHCCCCCCCCCCC-----CHHHHHHHHHHCCCCE
T ss_conf 999804344226887677764-----6788745787469723