HHsearch alignment for GI: 254780271 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.93 E-value=1.4e-08 Score=80.68 Aligned_cols=112 Identities=27% Similarity=0.448 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-----C-------EEEHH-
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-----3-------13101-
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-----P-------FTMAD- 145 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-----P-------F~~vd- 145 (424)
T Consensus 18 ~vGQ~~v~~~l~na~~~~--r~------------~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~ 83 (721)
T PRK12323 18 LVGQEHVVRALTHALEQQ--RL------------HHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA 83 (721)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 328599999999999719--97------------5447502799888989999999997689986678987887877654
Q ss_pred HHHHHHHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2211111103---------5563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 146 ATTLTEAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 146 aT~~TE~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
T Consensus 84 C~~i~~g~~~d~~EiDaas~~~v~~-~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--------------afnalLKtl 148 (721)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDE-MAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--------------AFNAMLKTL 148 (721)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHH
T ss_conf 6877568987647743676788899-9999985455887664469998540005899--------------999999840
Q ss_pred CCC
Q ss_conf 587
Q gi|254780271|r 217 EGT 219 (424)
Q Consensus 217 eg~ 219 (424)
T Consensus 149 EeP 151 (721)
T PRK12323 149 EEP 151 (721)
T ss_pred CCC
T ss_conf 179