HHsearch alignment for GI: 254780271 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.34 E-value=1e-11 Score=102.55 Aligned_cols=118 Identities=24% Similarity=0.346 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----E
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853-----1
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-----F 141 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-----F 141 (424)
T Consensus 10 RP~~~~d-----vvGq~~i~~~L~~~~~~------------~-~--~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~ 69 (337)
T PRK12402 10 RPSLFED-----ILGQESVVDHLSALAAS------------G-N--LPHLVVYGPSGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CCCCHHH-----HCCCHHHHHHHHHHHHC------------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8897998-----03979999999999977------------9-9--8769888929848999999999996799756783
Q ss_pred EEHHHHHHHHHHH------------------CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3101221111110------------------35563303577887-6542277654223332233320023333334432
Q gi|254780271|r 142 TMADATTLTEAGY------------------VGEDVENIILKLLQ-AADYNVERAQRGIVYIDEVDKISRKSDNPSITRD 202 (424)
Q Consensus 142 ~~vdaT~~TE~GY------------------vG~Dvesii~~L~~-~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~d 202 (424)
T Consensus 70 ~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~---------- 139 (337)
T PRK12402 70 TYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE---------- 139 (337)
T ss_pred CEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH----------
T ss_conf 3311653113564001016642344201533277378999999999861488778804999707131799----------
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 1025689887531058
Q gi|254780271|r 203 VSGEGVQQALLKIMEG 218 (424)
Q Consensus 203 vs~~gvq~~LLkileg 218 (424)
T Consensus 140 ----~Aq~aLlk~lEe 151 (337)
T PRK12402 140 ----DAQQALRRIMER 151 (337)
T ss_pred ----HHHHHHHHHHHC
T ss_conf ----999999988740