HHsearch alignment for GI: 254780271 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=97.43 E-value=0.0016 Score=45.25 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=105.7
Q ss_pred HHHHHCCCHHHH--HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHHCCCEEE---HHH
Q ss_conf 974203085999--99-99999986588752121013552256835884-073321769999999871853131---012
Q gi|254780271|r 74 VLDEYVIGQGQA--KK-VLAVAVHNHYKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARIIDVPFTM---ADA 146 (424)
Q Consensus 74 ~Ld~yVIGQ~~A--Kk-avAvAv~nh~rR~~~~~~~~~~ei~~~NILli-GPTGvGKTelAr~LAk~l~~PF~~---vda 146 (424)
T Consensus 109 tFd~FVvG~~N~lA~~aa~~va--------~~~~~~~g---~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvta 177 (455)
T PRK12422 109 TFANFLVTPENDLPFRILQEFA--------KVSEQGKG---FPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSS 177 (455)
T ss_pred CCCCEEECCCCHHHHHHHHHHH--------HCCCCCCC---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 3558331586099999999998--------37553588---767875887899997899999999985379986999749
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 21111110355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 147 TTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 147 T~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
T Consensus 178 e~F~~-~~v----~ai~~~~~--~~Fr~~yr~~DvLLIDDIQfl~gK------------~~tqeEff~tfN~L~~----- 233 (455)
T PRK12422 178 ELFTE-HLV----SAIRSGEM--QRFRSFYRNVDALFIEDIEVFSGK------------GATQEEFFHTFNSLHT----- 233 (455)
T ss_pred HHHHH-HHH----HHHHCCCH--HHHHHHHHCCCEEEEEHHHHHHCC------------HHHHHHHHHHHHHHHH-----
T ss_conf 99999-999----99975889--999999963887763147887284------------8899999999999998-----
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
T Consensus 234 -------~~KQIVitsDr---------------------------------------------~P~el~--~l~~RL~SR 259 (455)
T PRK12422 234 -------EGKLIVISSSY---------------------------------------------APGDLK--AMEERLISR 259 (455)
T ss_pred -------CCCEEEEECCC---------------------------------------------CHHHHH--HHHHHHHHH
T ss_conf -------59969996898---------------------------------------------957651--268999988
Q ss_pred C--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7--84267211105789999874267799999999874498999968999999995510678742368999999677740
Q gi|254780271|r 307 L--PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMF 384 (424)
Q Consensus 307 l--PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimF 384 (424)
T Consensus 260 f~~GL~v~I~~Pd~etr~~Il~~-----------k~~~~~~--~l~~ev~~~iA~~i---~~niReLeGal~~l~~~~~~ 323 (455)
T PRK12422 260 FEWGIAIPIHPLTREGLRSFLMR-----------QAEQLSI--RIEETALDFLIQAL---SSNVKTLLHALTLLAKRVAY 323 (455)
T ss_pred HHCCEEECCCCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 63761321689998999999999-----------9987188--88446899999997---55179999999999999998
Q ss_pred C
Q ss_conf 2
Q gi|254780271|r 385 E 385 (424)
Q Consensus 385 e 385 (424)
T Consensus 324 ~ 324 (455)
T PRK12422 324 K 324 (455)
T ss_pred H
T ss_conf 7