HHsearch alignment for GI: 254780271 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.58 E-value=1.5e-07 Score=73.36 Aligned_cols=134 Identities=26% Similarity=0.392 Sum_probs=98.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCC
Q ss_conf 20308599999999999865887521210135522568358840733217699999998718531310122111111035
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG 156 (424)
T Consensus 541 ~diGGlee~kq~lreaveWPlk~~~-~f~k~G~-~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~l-skWvG 617 (980)
T TIGR01243 541 EDIGGLEEVKQELREAVEWPLKAPE-VFEKLGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL-SKWVG 617 (980)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHH-HHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHH-HHHHC
T ss_conf 0146678999999877523444058-9986078-8997348746898616888887740145646774073122-34403
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 157 EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 157 ~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 618 es-e~~ir~if~~a----rq~aP~~~f~deidaiaP~rG~~~~~~~vtd~-~~nqll~e~dG~ 674 (980)
T TIGR01243 618 ES-EKAIREIFRKA----RQAAPAIIFFDEIDAIAPARGASLDEKGVTDR-IVNQLLTELDGL 674 (980)
T ss_pred HH-HHHHHHHHHHH----HHCCCEEEEEECHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCC
T ss_conf 24-79999999986----41287378730211105412442100102689-999999864044