HHsearch alignment for GI: 254780271 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.32 E-value=0.0022 Score=44.24 Aligned_cols=20 Identities=60% Similarity=0.913 Sum_probs=16.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35884073321769999999871
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l 137 (424)
T Consensus 129 LiLVTGPTGSGKST---TlAsmI 148 (350)
T TIGR01420 129 LILVTGPTGSGKST---TLASMI 148 (350)
T ss_pred CEEEECCCCCCHHH---HHHHHH
T ss_conf 38987688986789---999999