HHsearch alignment for GI: 254780271 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=0 Score=396.39 Aligned_cols=277 Identities=26% Similarity=0.377 Sum_probs=226.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853131012
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
T Consensus 487 ~L~~L~~~L~~kIfGQD~AI~~lv~ai----K~SrAGl~~~nkP~G--SFLF~GPTGVGKTElak~LA~~LGv~l~RFDM 560 (774)
T TIGR02639 487 KLKNLEKELKAKIFGQDEAIEQLVSAI----KRSRAGLGEPNKPVG--SFLFVGPTGVGKTELAKQLAEELGVHLLRFDM 560 (774)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHCCCCCCCEE--EEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC
T ss_conf 872044763013151589999999999----998742477888168--88864798962578899999970820010465
Q ss_pred HHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 2111111----035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 147 TTLTEAG----YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 147 T~~TE~G----YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
T Consensus 561 SEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpD--------------I~NILLQVMD~--At 624 (774)
T TIGR02639 561 SEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPD--------------IYNILLQVMDY--AT 624 (774)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHH--------------HHHHHHHHHCC--CE
T ss_conf 044689999874168888513167772122331288535423466663133--------------66678766335--43
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf 256556432224302431000123220004678988764123433321111000-0000168999641056777522068
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKD-SDNRPVGEVLRNLESEDLVKFGLIP 301 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~DL~~~gliP 301 (424)
T Consensus 625 LTDN~GrKaDFRNVILIMTSNa-----Ga---------~E~~~~~iGF~~~~~~~~~~-------------~Aikk~F~P 677 (774)
T TIGR02639 625 LTDNNGRKADFRNVILIMTSNA-----GA---------REMSKNPIGFGGERVEDKSE-------------KAIKKLFSP 677 (774)
T ss_pred EECCCCCEEEECCEEEEECCCC-----CC---------CCCCCCCCCCCCCCCHHHHH-------------HHHHHHCCC
T ss_conf 4058885763113688840370-----01---------02367764425554123348-------------889731587
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH---
Q ss_conf 98720784267211105789999874267799999999874498999968999999995510678742368999999---
Q gi|254780271|r 302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI--- 378 (424)
Q Consensus 302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i--- 378 (424)
T Consensus 678 EFRNRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~ 753 (774)
T TIGR02639 678 EFRNRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKK 753 (774)
T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 42013346441699889999999999----99999975530653787647899999863678110554489998874125
Q ss_pred --HHHHHHCCCCCCCCCEEEEC
Q ss_conf --67774027678984199983
Q gi|254780271|r 379 --LLDTMFELPMLKGVSSVIIS 398 (424)
Q Consensus 379 --LedimFe~P~~~~~~~v~Id 398 (424)
T Consensus 754 ~L~dEILFG~LK-kG-G~v~~~ 773 (774)
T TIGR02639 754 PLSDEILFGKLK-KG-GEVKIS 773 (774)
T ss_pred HHHHHHCCCCCC-CC-CEEEEE
T ss_conf 765442057001-67-268873