HHsearch alignment for GI: 254780271 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.21 E-value=0.00027 Score=50.61 Aligned_cols=62 Identities=37% Similarity=0.513 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH-HHHHC--CC
Q ss_conf 998789999974203085999999999998658875212101355225683588407332176999999-98718--53
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL-ARIID--VP 140 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~L-Ak~l~--~P 140 (424)
T Consensus 105 IRkkA~~vfTLDdYV-----~~gimtaaQ~d~l~~A---------v~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P 169 (315)
T TIGR02782 105 IRKKAVRVFTLDDYV-----EAGIMTAAQRDVLREA---------VAARKNILVVGGTGSGKTTLANALLAEIAKLNDP 169 (315)
T ss_pred HCCCCCCCCCCHHHH-----HHCCCCHHHHHHHHHH---------HHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 110224104707776-----4044557899999999---------9712988998145885799999999988521699