HHsearch alignment for GI: 254780271 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.22 E-value=0.035 Score=35.85 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 256835884073321769999999871
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
T Consensus 156 ~~~knIii~GGTgSGKTTf~kal~~~I 182 (328)
T TIGR02788 156 ASRKNIIISGGTGSGKTTFLKALVKEI 182 (328)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 738919999068971899999997327