HHsearch alignment for GI: 254780271 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.93 E-value=6.5e-09 Score=82.98 Aligned_cols=227 Identities=22% Similarity=0.298 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---------
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871---------
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--------- 137 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--------- 137 (424)
T Consensus 60 RP~SF~E-----IiGQe~GI~ALKAALC--------GP-------NPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFk 119 (532)
T TIGR02902 60 RPKSFDE-----IIGQEEGIKALKAALC--------GP-------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (532)
T ss_pred CCCCCCC-----CCCCHHHHHHHHHHCC--------CC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7776332-----5673556899998606--------86-------89638987886961789999999986508753789
Q ss_pred -CCCEEEHHHHH--HHHHHHCCCCCCCHHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -85313101221--11111035563303577--------8876-----54227765422333223332002333333443
Q gi|254780271|r 138 -DVPFTMADATT--LTEAGYVGEDVENIILK--------LLQA-----ADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201 (424)
Q Consensus 138 -~~PF~~vdaT~--~TE~GYvG~Dvesii~~--------L~~~-----a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~ 201 (424)
T Consensus 120 e~A~FVEiDATT~RFDERGIADPLIGSV-HDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~-------- 190 (532)
T TIGR02902 120 EEAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPV-------- 190 (532)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH--------
T ss_conf 8866898505103602146666567761-5853337654578855758777632025865512124665824--------
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 21025689887531058701025655643222430243100012322000467898876412343332111100000001
Q gi|254780271|r 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRP 281 (424)
Q Consensus 202 dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 281 (424)
T Consensus 191 ------~MNKLLKVLEDRKVFLdSAYY~s--~~pniP---~hI------------------------------------- 222 (532)
T TIGR02902 191 ------QMNKLLKVLEDRKVFLDSAYYSS--EDPNIP---SHI------------------------------------- 222 (532)
T ss_pred ------HHHHHHHHHHCCCCHHHCCCCCC--CCCCCC---HHH-------------------------------------
T ss_conf ------35314113302220000123587--778654---278-------------------------------------
Q ss_pred HHHHHHHHHHHHH--------HHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 6899964105677--------75220689872078426721110578999987426779999999987449899996899
Q gi|254780271|r 282 VGEVLRNLESEDL--------VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDA 353 (424)
Q Consensus 282 ~~~~~~~~~~~DL--------~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeA 353 (424)
T Consensus 223 -~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC-~EIFFR~L~~EEi~~iA-------------k~AaeKIg~~l~~~A 287 (532)
T TIGR02902 223 -RDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLKEEIKEIA-------------KNAAEKIGLNLEKEA 287 (532)
T ss_pred -HHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCC-EEEEECCCCHHHHHHHH-------------HHHHHHCCCCCCHHH
T ss_conf -997206787340121333698776783465052-26771688878999998-------------765653046547547
Q ss_pred HHHHHHHHHH---------------CCCCCHHH-HHHHHHHHHHHHHC
Q ss_conf 9999995510---------------67874236-89999996777402
Q gi|254780271|r 354 LREIARCAIA---------------HKTGARGL-RSILEKILLDTMFE 385 (424)
Q Consensus 354 i~~IA~~A~~---------------~niGAR~L-rtIiE~iLedimFe 385 (424)
T Consensus 288 l~~I~~Ya~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~G~y~ 335 (532)
T TIGR02902 288 LDLIAKYASNGREAVNLVQLAAGIALGENRKRILAEDIEWVIESGNYH 335 (532)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHHCCCC
T ss_conf 999998740540677899997314012887612054644555304787