HHsearch alignment for GI: 254780271 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.46  E-value=3.3e-13  Score=113.05  Aligned_cols=254  Identities=26%  Similarity=0.370  Sum_probs=176.7

Q ss_pred             CHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH---HH
Q ss_conf             000026998789999974203085999999999998658875212101355225683588407332176999999---98
Q gi|254780271|r   59 TKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL---AR  135 (424)
Q Consensus        59 ~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~L---Ak  135 (424)
T Consensus       142 ~~s~~slLRP~~f~E-----iVGQerAI~aLlaK~-------a--------SPfPQHiiLYGPPGVGKTTaARl~LEe~K  201 (616)
T TIGR02903       142 AKSIQSLLRPRAFSE-----IVGQERAIKALLAKL-------A--------SPFPQHIILYGPPGVGKTTAARLALEEAK  201 (616)
T ss_pred             HHHHHHHCCCCCCCC-----CCCHHHHHHHHHHHH-------C--------CCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             999998628766764-----333468999999763-------1--------88866078557338847899999876213


Q ss_pred             HH-------CCCEEEHHHHHHH----HH-----H------HCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf             71-------8531310122111----11-----1------03556330357788765-----422776542233322333
Q gi|254780271|r  136 II-------DVPFTMADATTLT----EA-----G------YVGEDVENIILKLLQAA-----DYNVERAQRGIVYIDEVD  188 (424)
Q Consensus       136 ~l-------~~PF~~vdaT~~T----E~-----G------YvG~Dvesii~~L~~~a-----~~~v~~a~~~iv~iDEid  188 (424)
T Consensus       202 ~~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~-----RDLAE~GvPEPk~GLVT~AHGGvLFIDEIG  276 (616)
T TIGR02903       202 KLKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGAR-----RDLAETGVPEPKLGLVTDAHGGVLFIDEIG  276 (616)
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf             687447611378575157626677410147767762576556764-----011047879898987100477567650211


Q ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             20023333334432102568988753105870102565564322243024310001232200046789887641234333
Q gi|254780271|r  189 KISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASI  268 (424)
Q Consensus       189 Ki~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~  268 (424)
T Consensus       277 ELD~l--------------LQnKLLKVLEDKrV~F~SsYYD---------pdD~Nv------------------------  309 (616)
T TIGR02903       277 ELDPL--------------LQNKLLKVLEDKRVEFSSSYYD---------PDDENV------------------------  309 (616)
T ss_pred             HHHHH--------------HHHHHHHHHCCCEEEEEECCCC---------CCCCCC------------------------
T ss_conf             22278--------------7632444322643665321248---------753786------------------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHH--------HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             211110000000168999641056777--------522068987207842672111057899998742677999999998
Q gi|254780271|r  269 GFSAVVKDSDNRPVGEVLRNLESEDLV--------KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLF  340 (424)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~DL~--------~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll  340 (424)
T Consensus       310 ----------PkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaE-vfFePL~p~dI~~Iv~-------------~  365 (616)
T TIGR02903       310 ----------PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTPEDIKEIVL-------------N  365 (616)
T ss_pred             ----------CHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCE-EECCCCCHHHHHHHHH-------------H
T ss_conf             ----------558888522688825687266158824405123301431-3217988789999999-------------9


Q ss_pred             HHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCEEEECHHHHC-----CCCCEEEEE
Q ss_conf             7449899996899999999551067874236899999967774027678-98419998377855-----878816872
Q gi|254780271|r  341 DMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPML-KGVSSVIISDDVVK-----GKACPLNVY  412 (424)
Q Consensus       341 ~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~-~~~~~v~Id~~~V~-----~~~~p~~~~  412 (424)
T Consensus       366 AA~klnv~L~~gV~e~Ia~YTie----GRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl~Py~~~  439 (616)
T TIGR02903       366 AAEKLNVKLAEGVEELIARYTIE----GRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQISRLSPYEKV  439 (616)
T ss_pred             HHHHCCCCCCCCHHHHHHHCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHC
T ss_conf             88861770003648787214713----112223465467676530455567777426618677767753045750112