HHsearch alignment for GI: 254780271 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.33 E-value=0.00031 Score=50.26 Aligned_cols=215 Identities=21% Similarity=0.343 Sum_probs=124.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835884073321769999999871---853131012211111----1035563303577887654227765422333223
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
T Consensus 23 rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAF-TGA~~rh~GRFERAdGGTLFLDE 101 (349)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAF-TGAKKRHEGRFERADGGTLFLDE 101 (349)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCH-HHHCCCCCCCCEECCCCCCHHHH
T ss_conf 86688614674689999885332465548862661012782555566531001001-30304688985443688738888
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf 33200233333344321025689887531058701025655643222430243100012322000467898876412343
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKA 266 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~ 266 (424)
T Consensus 102 lAtas~~--------------VQEKLLRViEYG~--fERVGG~~~l~vDVRlvaATN~---------DLP~lA~~G---- 152 (349)
T TIGR02974 102 LATASLA--------------VQEKLLRVIEYGE--FERVGGSQTLKVDVRLVAATNA---------DLPALAAEG---- 152 (349)
T ss_pred HHCCCHH--------------HHHHHHHHHCCCC--EEECCCCCEEEECCEEEECCCC---------CHHHHHHCC----
T ss_conf 7142167--------------6786612010130--3301786047735136762141---------369898658----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 33211110000000168999641056777522068987207842672111057899998742677999999998744-98
Q gi|254780271|r 267 SIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DV 345 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV 345 (424)
T Consensus 153 --~FR-----------aDLLDRLAF-DVi---~LPPLR~R~~D--------------I~-----lLAe~FA~~Ma~EL~~ 196 (349)
T TIGR02974 153 --RFR-----------ADLLDRLAF-DVI---TLPPLRERQED--------------IM-----LLAEHFAIRMARELGL 196 (349)
T ss_pred --CCC-----------CHHHHHHHH-HHC---CCCCCCCCCCC--------------HH-----HHHHHHHHHHHHHHCC
T ss_conf --984-----------014554456-550---79788887232--------------78-----9999999999997078
Q ss_pred E--EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECH
Q ss_conf 9--99968999999995510678742368999999677740276789841999837
Q gi|254780271|r 346 E--LVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISD 399 (424)
Q Consensus 346 ~--L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~ 399 (424)
T Consensus 197 ~~F~GFt~~A~~~L~~Y~WPGNv--RELkNvvERsVyR~~~~~---~~i~~i~~dP 247 (349)
T TIGR02974 197 PLFPGFTPQAREQLLEYHWPGNV--RELKNVVERSVYRHGREE---APIEEIIIDP 247 (349)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHCCCCC---CCHHHEEECC
T ss_conf 65511438999999706888852--124446766653058766---4201201077