HHsearch alignment for GI: 254780271 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.24 E-value=1e-05 Score=60.62 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=52.8
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECHHHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf 898720784267211105789999874267799999999874498--9999689999999955106787-4236899999
Q gi|254780271|r 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDV--ELVFHEDALREIARCAIAHKTG-ARGLRSILEK 377 (424)
Q Consensus 301 PEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV--~L~FtdeAi~~IA~~A~~~niG-AR~LrtIiE~ 377 (424)
T Consensus 177 ~~l~qRI~~~~~L~pl~~eet~~YI~---~--------RL~~AG~~~~~~Ft~~A~~~I~~~S~----G~PR~IN~Lc~~ 241 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE---H--------RLERAGNRDAPVFSEGAFDAIHRFSR----GIPRLINILCDR 241 (269)
T ss_pred HHHHHCEEEEEEECCCCHHHHHHHHH---H--------HHHHCCCCCCCCCCHHHHHHHHHHCC----CCHHHHHHHHHH
T ss_conf 54555076799847999899999999---9--------99866999999859999999999869----900899999999
Q ss_pred HHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf 967774027678984199983778558
Q gi|254780271|r 378 ILLDTMFELPMLKGVSSVIISDDVVKG 404 (424)
Q Consensus 378 iLedimFe~P~~~~~~~v~Id~~~V~~ 404 (424)
T Consensus 242 aLl~a~~~-------~~~~I~~~~v~~ 261 (269)
T TIGR03015 242 LLLSAFLE-------EKREIGGEEVRE 261 (269)
T ss_pred HHHHHHHH-------CCCCCCHHHHHH
T ss_conf 99999994-------888679999999