HHsearch alignment for GI: 254780271 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.68 E-value=0.0016 Score=45.32 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 83588407332176999999987
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~ 136 (424)
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976