HHsearch alignment for GI: 254780271 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.48 E-value=2.5e-06 Score=64.94 Aligned_cols=97 Identities=28% Similarity=0.363 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEE-------EHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 56835884073321769999999871---85313-------1012211-111103556330357788765422776542-
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFT-------MADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQR- 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~-------~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~- 179 (424)
T Consensus 207 ~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGe-FEeRlk~ii~e----i~~~~~~ 281 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE-FENRLKSVIDE----VKASPQP 281 (852)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCH-HHHHHHHHHHH----HHHCCCC
T ss_conf 479974657999879999999999997699986774385678678888640357635-99999999999----9848997
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333223332002333333443210256898875310587
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
T Consensus 282 iILFIDEiHtlvGAG~~-~G~~D-----aaNiLKPaLarG 315 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQ-AGQGD-----AANLLKPALARG 315 (852)
T ss_pred EEEEEEHHHHHCCCCCC-CCCCC-----HHHHHHHHHHCC
T ss_conf 69996348775289988-88622-----788751787378