HHsearch alignment for GI: 254780271 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.7e-44 Score=332.04 Aligned_cols=271 Identities=22% Similarity=0.354 Sum_probs=210.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHH
Q ss_conf 99999742030859999999999986588752121013552256835884073321769999999871---853131012
Q gi|254780271|r 70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADA 146 (424)
Q Consensus 70 eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vda 146 (424)
T Consensus 558 ~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~r----P~--GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM 631 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNR----PI--GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM 631 (852)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC----CC--EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 788889989717099999999999999718888999----74--589986788776899999999998558520698430
Q ss_pred HHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 211111-----------103556330357788765422776542233322333200233333344321025689887531
Q gi|254780271|r 147 TTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215 (424)
Q Consensus 147 T~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLki 215 (424)
T Consensus 632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lt-------e~vr~~PysVvL~DEIEKAh~~--------------V~~~lLQi 690 (852)
T TIGR03346 632 SEYMEKHSVARLIGAPPGYVGYEEGGQLT-------EAVRRKPYSVVLFDEVEKAHPD--------------VFNVLLQV 690 (852)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCEEC-------HHHHHCCCEEEEECCHHHHCHH--------------HHHHHHHH
T ss_conf 44301224778558999767768787423-------9898198879985305430768--------------99999988
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 05870102565564322243024310001232200046789887641234333211110000000168999641056777
Q gi|254780271|r 216 MEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV 295 (424)
Q Consensus 216 leg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~ 295 (424)
T Consensus 691 lD~G--~ltD~~Gr~vdF~NtiiimTSN~-----Ga~~i~~---------~~~~~--~---------~~~~~~~~~-~~~ 742 (852)
T TIGR03346 691 LDDG--RLTDGQGRTVDFRNTVIIMTSNL-----GSQFIQE---------LAGGD--D---------YEEMREAVM-EVL 742 (852)
T ss_pred HCCC--EEECCCCCEEEEEEEEEEEECCC-----CHHHHHH---------HCCCC--C---------HHHHHHHHH-HHH
T ss_conf 2367--43079998885355689861540-----6599974---------11455--5---------799999999-999
Q ss_pred HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 52206898720784267211105789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r 296 KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375 (424)
Q Consensus 296 ~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi 375 (424)
T Consensus 743 ~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i 818 (852)
T TIGR03346 743 RAHFRPEFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HHHCCHHHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 96589989963786898378999999999999----99999999997798499888999999984889774715699999
Q ss_pred HHHHHHHHHCCCC---CCCCCEEEECH
Q ss_conf 9996777402767---89841999837
Q gi|254780271|r 376 EKILLDTMFELPM---LKGVSSVIISD 399 (424)
Q Consensus 376 E~iLedimFe~P~---~~~~~~v~Id~ 399 (424)
T Consensus 819 ~~~i~~~la~~iL~g~~~~g~~v~v~~ 845 (852)
T TIGR03346 819 QREIENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 999889999999748889959899997