HHsearch alignment for GI: 254780271 and conserved domain: TIGR03346

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00  E-value=1.7e-44  Score=332.04  Aligned_cols=271  Identities=22%  Similarity=0.354  Sum_probs=210.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHH
Q ss_conf             99999742030859999999999986588752121013552256835884073321769999999871---853131012
Q gi|254780271|r   70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADA  146 (424)
Q Consensus        70 eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vda  146 (424)
T Consensus       558 ~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~r----P~--GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM  631 (852)
T TIGR03346       558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNR----PI--GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM  631 (852)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC----CC--EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf             788889989717099999999999999718888999----74--589986788776899999999998558520698430


Q ss_pred             HHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             211111-----------103556330357788765422776542233322333200233333344321025689887531
Q gi|254780271|r  147 TTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI  215 (424)
Q Consensus       147 T~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLki  215 (424)
T Consensus       632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lt-------e~vr~~PysVvL~DEIEKAh~~--------------V~~~lLQi  690 (852)
T TIGR03346       632 SEYMEKHSVARLIGAPPGYVGYEEGGQLT-------EAVRRKPYSVVLFDEVEKAHPD--------------VFNVLLQV  690 (852)
T ss_pred             HHHCCHHHHHHHCCCCCCCCCCCCCCEEC-------HHHHHCCCEEEEECCHHHHCHH--------------HHHHHHHH
T ss_conf             44301224778558999767768787423-------9898198879985305430768--------------99999988


Q ss_pred             CCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             05870102565564322243024310001232200046789887641234333211110000000168999641056777
Q gi|254780271|r  216 MEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV  295 (424)
Q Consensus       216 leg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~  295 (424)
T Consensus       691 lD~G--~ltD~~Gr~vdF~NtiiimTSN~-----Ga~~i~~---------~~~~~--~---------~~~~~~~~~-~~~  742 (852)
T TIGR03346       691 LDDG--RLTDGQGRTVDFRNTVIIMTSNL-----GSQFIQE---------LAGGD--D---------YEEMREAVM-EVL  742 (852)
T ss_pred             HCCC--EEECCCCCEEEEEEEEEEEECCC-----CHHHHHH---------HCCCC--C---------HHHHHHHHH-HHH
T ss_conf             2367--43079998885355689861540-----6599974---------11455--5---------799999999-999


Q ss_pred             HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             52206898720784267211105789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r  296 KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL  375 (424)
Q Consensus       296 ~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi  375 (424)
T Consensus       743 ~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i  818 (852)
T TIGR03346       743 RAHFRPEFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAI  818 (852)
T ss_pred             HHHCCHHHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             96589989963786898378999999999999----99999999997798499888999999984889774715699999


Q ss_pred             HHHHHHHHHCCCC---CCCCCEEEECH
Q ss_conf             9996777402767---89841999837
Q gi|254780271|r  376 EKILLDTMFELPM---LKGVSSVIISD  399 (424)
Q Consensus       376 E~iLedimFe~P~---~~~~~~v~Id~  399 (424)
T Consensus       819 ~~~i~~~la~~iL~g~~~~g~~v~v~~  845 (852)
T TIGR03346       819 QREIENPLAKKILAGEVADGDTIVVDV  845 (852)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             999889999999748889959899997