HHsearch alignment for GI: 254780271 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.23 E-value=0.031 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHCCCH
Q ss_conf 98789999974203085
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQ 82 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ 82 (424)
T Consensus 165 ~~Pl~~~~v~D~Vi~~~ 181 (694)
T TIGR03375 165 ASPLFVMNVYDRVVPNQ 181 (694)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999997977612379