HHsearch alignment for GI: 254780271 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.22 E-value=1.8e-05 Score=58.94 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=104.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHH
Q ss_conf 9974203085999999999998658875212101355225683-588407332176999999987185---313101221
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSN-ILLVGPTGCGKTYLAQTLARIIDV---PFTMADATT 148 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~ 148 (424)
T Consensus 12 ~tfdnFi~~~--N~~~~~-~l~~~~~~------~------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~ 76 (226)
T TIGR03420 12 PTFDNFYAGG--NAELLA-ALRQLAAG------K------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCHHCCCCCC--HHHHHH-HHHHHHHC------C------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHH
T ss_conf 7631236586--799999-99987646------6------8886999899999889999999999862699579952999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 11111035563303577887654227765422333223332002333333443210256898875310587010256556
Q gi|254780271|r 149 LTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGG 228 (424)
Q Consensus 149 ~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~g 228 (424)
T Consensus 77 ~~~~-----~-----~~~l~------~l~~~d~l~iDDi~~i~~~~------------~~e~~lF~l~N~~~~------- 121 (226)
T TIGR03420 77 LAQA-----D-----PEVLE------GLEQADLVCLDDVEAIAGQP------------EWQEALFHLYNRVRE------- 121 (226)
T ss_pred HHHH-----H-----HHHHH------HCCCCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHHH-------
T ss_conf 8775-----3-----99997------27448999996633343783------------789999999999986-------
Q ss_pred CCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC-
Q ss_conf 4322243024310001232200046789887641234333211110000000168999641056777522068987207-
Q gi|254780271|r 229 RKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL- 307 (424)
Q Consensus 229 rk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl- 307 (424)
T Consensus 122 -----~~~~ilits~~---------------------------------------------~p~~l~--~~l~dL~SRl~ 149 (226)
T TIGR03420 122 -----AGGRLLIAGRA---------------------------------------------APAQLP--LRLPDLRTRLA 149 (226)
T ss_pred -----HCCEEEEECCC---------------------------------------------CHHHCC--CCHHHHHHHHH
T ss_conf -----52828986788---------------------------------------------823203--20177999996
Q ss_pred -CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf -842672111057899998742677999999998744989999689999999955106787423689999996777
Q gi|254780271|r 308 -PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 308 -PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
T Consensus 150 ~~~~~~I~~pdd~~~~~iL~-----------k~~~~r~i--~i~~~vi~yl~~r~-~R~--~~~l~~~l~~Ld~~s 209 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQ-----------SRAARRGL--QLPDEVADYLLRHG-SRD--MGSLMALLDALDRAS 209 (226)
T ss_pred CCCEEECCCCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHC-CCC--HHHHHHHHHHHHHHH
T ss_conf 88568527999999999999-----------99998599--88999999999863-798--999999999999999