HHsearch alignment for GI: 254780271 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.00 E-value=0.062 Score=34.11 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHH-HHHHHHHC-CCC
Q ss_conf 25683588407332176999999987---18531310122-11111103-556
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADAT-TLTEAGYV-GED 158 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT-~~TE~GYv-G~D 158 (424)
T Consensus 40 ~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d 92 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATD 92 (410)
T ss_pred HHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCC
T ss_conf 20274799889999889999999999998699099995885499997544776