HHsearch alignment for GI: 254780271 and conserved domain: cd02030
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=93.16 E-value=0.087 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 588407332176999999987185313
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 899678567999999999998598210