HHsearch alignment for GI: 254780271 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.031 Score=36.26 Aligned_cols=31 Identities=32% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCCCCC-CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 552256-8358840733217699999998718
Q gi|254780271|r 108 NVELAK-SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~-~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 89985998999999999839999999976775