HHsearch alignment for GI: 254780271 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.44 E-value=0.055 Score=34.49 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=23.4
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 982999999999999849999999964546