HHsearch alignment for GI: 254780271 and conserved domain: cd03295
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.011 Score=39.27 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=23.1
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 225683-588407332176999999987185
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
T Consensus 23 ~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p 53 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8869989999999995699999999759999