HHsearch alignment for GI: 254780271 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.73 E-value=0.017 Score=38.03 Aligned_cols=32 Identities=34% Similarity=0.747 Sum_probs=24.2
Q ss_pred CCCCCCCCE-EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 552256835-88407332176999999987185
Q gi|254780271|r 108 NVELAKSNI-LLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 108 ~~ei~~~NI-LliGPTGvGKTelAr~LAk~l~~ 139 (424)
T Consensus 20 sl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p 52 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 779869989999999988099999999769999