Query gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 424
No_of_seqs 265 out of 2497
Neff 6.1
Searched_HMMs 39220
Date Tue May 24 11:15:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780271.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00382 clpX ATP-dependent C 100.0 0 0 1185.2 21.5 406 1-411 1-452 (452)
2 PRK05342 clpX ATP-dependent pr 100.0 0 0 1094.3 33.1 406 9-414 4-410 (411)
3 COG1219 ClpX ATP-dependent pro 100.0 0 0 1055.0 27.0 402 18-419 1-404 (408)
4 KOG0745 consensus 100.0 0 0 852.4 24.2 399 15-415 75-540 (564)
5 TIGR00390 hslU heat shock prot 100.0 0 0 844.6 14.3 296 66-414 1-457 (463)
6 PRK05201 hslU ATP-dependent pr 100.0 0 0 816.3 19.7 298 65-416 3-438 (442)
7 COG1220 HslU ATP-dependent pro 100.0 0 0 753.9 17.3 297 65-415 3-439 (444)
8 TIGR02639 ClpA ATP-dependent C 100.0 0 0 396.4 15.5 277 67-398 487-773 (774)
9 CHL00095 clpC Clp protease ATP 100.0 0 0 348.2 20.6 286 69-400 501-804 (823)
10 PRK11034 clpA ATP-dependent Cl 100.0 0 0 346.2 20.1 295 68-423 449-757 (758)
11 COG0542 clpA ATP-binding subun 100.0 1.4E-45 0 341.5 19.8 278 67-400 481-775 (786)
12 PRK10865 protein disaggregatio 100.0 0 0 341.9 19.3 272 69-399 560-848 (857)
13 TIGR03345 VI_ClpV1 type VI sec 100.0 1.4E-45 0 339.4 20.4 275 68-398 557-851 (852)
14 TIGR03346 chaperone_ClpB ATP-d 100.0 1.7E-44 0 332.0 19.3 271 70-399 558-845 (852)
15 KOG1051 consensus 100.0 8.1E-32 2.1E-36 243.3 13.1 266 69-385 554-836 (898)
16 pfam07724 AAA_2 AAA domain (Cd 100.0 1.3E-28 3.3E-33 220.9 8.1 151 114-310 4-168 (168)
17 PRK10787 DNA-binding ATP-depen 99.7 9.9E-16 2.5E-20 130.7 16.5 268 66-415 311-588 (784)
18 COG1223 Predicted ATPase (AAA+ 99.7 2.7E-16 7E-21 134.6 11.9 227 63-385 102-334 (368)
19 TIGR00763 lon ATP-dependent pr 99.6 3.3E-15 8.5E-20 127.0 10.7 245 69-387 403-666 (941)
20 CHL00176 ftsH cell division pr 99.6 2.2E-15 5.7E-20 128.2 9.8 132 77-219 177-310 (631)
21 pfam05496 RuvB_N Holliday junc 99.6 1.5E-14 3.7E-19 122.5 13.0 213 63-380 15-227 (234)
22 PRK03992 proteasome-activating 99.6 1.5E-14 3.8E-19 122.5 12.2 226 25-326 86-313 (390)
23 COG0466 Lon ATP-dependent Lon 99.6 8.1E-14 2.1E-18 117.3 14.9 266 67-417 313-592 (782)
24 CHL00181 cbbX CbbX; Provisiona 99.6 2.2E-13 5.7E-18 114.2 16.9 232 66-387 12-259 (287)
25 PRK10733 hflB ATP-dependent me 99.6 8.9E-15 2.3E-19 124.0 9.7 131 77-218 152-284 (644)
26 PRK13342 recombination factor 99.6 6.3E-14 1.6E-18 118.1 11.4 222 66-416 7-231 (417)
27 CHL00195 ycf46 Ycf46; Provisio 99.5 5.6E-14 1.4E-18 118.4 9.5 143 112-326 258-402 (491)
28 PRK13407 bchI magnesium chelat 99.5 1.5E-13 3.9E-18 115.3 11.4 223 79-384 10-288 (334)
29 PRK13341 recombination factor 99.5 4E-13 1E-17 112.4 12.2 224 65-407 21-245 (726)
30 TIGR02903 spore_lon_C ATP-depe 99.5 3.3E-13 8.4E-18 113.1 8.6 254 59-412 142-439 (616)
31 COG0464 SpoVK ATPases of the A 99.4 9.5E-12 2.4E-16 102.8 14.8 179 79-329 244-423 (494)
32 TIGR01241 FtsH_fam ATP-depende 99.4 7.6E-14 2E-18 117.5 3.9 127 79-218 61-192 (505)
33 PRK00080 ruvB Holliday junctio 99.4 1.8E-12 4.6E-17 107.9 10.5 210 63-375 16-227 (328)
34 pfam01078 Mg_chelatase Magnesi 99.4 3.4E-13 8.6E-18 113.0 6.1 184 78-321 4-207 (207)
35 KOG0731 consensus 99.4 9.3E-13 2.4E-17 109.9 7.5 131 78-219 312-445 (774)
36 COG0714 MoxR-like ATPases [Gen 99.4 5.7E-13 1.5E-17 111.4 5.4 147 66-244 13-163 (329)
37 COG0606 Predicted ATPase with 99.4 2.8E-12 7.1E-17 106.6 7.6 295 11-382 119-467 (490)
38 PRK12402 replication factor C 99.3 1E-11 2.7E-16 102.5 10.0 118 67-218 10-151 (337)
39 KOG2004 consensus 99.3 1.5E-11 3.8E-16 101.4 10.3 203 114-386 439-649 (906)
40 PRK09862 putative ATP-dependen 99.3 1.3E-10 3.4E-15 94.8 11.9 300 13-382 134-474 (506)
41 PRK07270 DNA polymerase III su 99.3 1E-10 2.6E-15 95.6 11.3 111 79-219 17-145 (557)
42 COG1222 RPT1 ATP-dependent 26S 99.3 2.9E-11 7.5E-16 99.4 8.3 97 112-217 184-280 (406)
43 TIGR00368 TIGR00368 Mg chelata 99.3 1.5E-11 3.7E-16 101.5 6.6 156 29-224 143-330 (505)
44 CHL00081 chlI Mg-protoporyphyr 99.2 2.9E-10 7.5E-15 92.4 13.0 217 78-379 13-294 (347)
45 PRK06305 DNA polymerase III su 99.2 1.5E-10 3.9E-15 94.3 11.6 112 79-220 19-149 (462)
46 cd00009 AAA The AAA+ (ATPases 99.2 3.2E-11 8.1E-16 99.1 8.0 93 80-190 1-96 (151)
47 PRK07133 DNA polymerase III su 99.2 1.2E-10 3E-15 95.2 10.9 112 79-219 20-145 (718)
48 PRK06647 DNA polymerase III su 99.2 2E-10 5.2E-15 93.5 12.0 112 79-219 18-146 (560)
49 PRK05896 DNA polymerase III su 99.2 1.2E-10 3.1E-15 95.1 10.6 112 79-219 18-146 (613)
50 pfam00004 AAA ATPase family as 99.2 3.1E-11 7.8E-16 99.3 7.3 95 116-219 1-95 (131)
51 PRK11608 pspF phage shock prot 99.2 1.8E-10 4.5E-15 94.0 11.2 220 78-380 7-238 (325)
52 PRK08451 DNA polymerase III su 99.2 1.5E-10 3.9E-15 94.4 10.7 112 79-219 16-144 (523)
53 PRK05563 DNA polymerase III su 99.2 1.5E-10 3.8E-15 94.5 10.1 111 79-219 18-146 (541)
54 COG2255 RuvB Holliday junction 99.2 1.9E-10 4.9E-15 93.7 10.2 207 65-374 19-227 (332)
55 PRK06674 DNA polymerase III su 99.2 3E-10 7.7E-15 92.3 11.1 111 79-219 18-146 (563)
56 KOG0738 consensus 99.2 7.5E-11 1.9E-15 96.6 7.9 134 78-222 213-346 (491)
57 KOG0734 consensus 99.2 1E-10 2.6E-15 95.6 8.6 140 65-218 292-433 (752)
58 TIGR00635 ruvB Holliday juncti 99.2 2.2E-10 5.7E-15 93.2 10.2 201 74-373 2-204 (305)
59 TIGR02397 dnaX_nterm DNA polym 99.2 5.8E-11 1.5E-15 97.3 7.1 111 79-219 16-143 (363)
60 PRK11388 DNA-binding transcrip 99.2 1.3E-10 3.3E-15 94.8 8.9 194 113-380 348-552 (639)
61 PRK04195 replication factor C 99.2 3.3E-10 8.4E-15 92.1 10.8 120 67-219 9-130 (403)
62 pfam06689 zf-C4_ClpX ClpX C4-t 99.2 1.1E-11 2.7E-16 102.5 3.1 39 15-53 1-39 (39)
63 TIGR01242 26Sp45 26S proteasom 99.2 2.9E-11 7.4E-16 99.4 5.0 98 112-218 155-252 (364)
64 PRK05022 anaerobic nitric oxid 99.2 3.6E-10 9.2E-15 91.8 9.9 219 77-380 186-417 (510)
65 PRK10923 glnG nitrogen regulat 99.1 7.5E-10 1.9E-14 89.5 11.2 198 112-380 160-369 (469)
66 KOG0730 consensus 99.1 2.5E-10 6.4E-15 92.9 8.2 132 78-221 435-567 (693)
67 PRK00440 rfc replication facto 99.1 5.5E-10 1.4E-14 90.5 9.9 103 79-218 18-127 (318)
68 KOG0733 consensus 99.1 4.2E-11 1.1E-15 98.3 4.1 99 111-218 221-319 (802)
69 PRK07003 DNA polymerase III su 99.1 4E-10 1E-14 91.4 9.1 106 79-220 18-147 (816)
70 PRK09112 DNA polymerase III su 99.1 1.3E-09 3.3E-14 87.9 11.6 59 60-137 11-69 (352)
71 PRK13765 ATP-dependent proteas 99.1 7.2E-10 1.8E-14 89.7 10.3 55 62-137 20-74 (637)
72 pfam07728 AAA_5 AAA domain (dy 99.1 4.9E-11 1.2E-15 97.8 3.9 110 115-244 1-123 (139)
73 PRK10365 transcriptional regul 99.1 5.8E-10 1.5E-14 90.3 9.1 198 112-380 161-370 (441)
74 PRK06645 DNA polymerase III su 99.1 1.5E-09 3.8E-14 87.4 11.0 113 67-220 16-156 (507)
75 PRK08691 DNA polymerase III su 99.1 1.6E-09 4E-14 87.3 10.8 112 79-219 18-146 (704)
76 COG2256 MGS1 ATPase related to 99.1 1.7E-09 4.4E-14 87.0 10.8 170 113-379 48-217 (436)
77 PRK10820 DNA-binding transcrip 99.1 2.1E-09 5.3E-14 86.4 11.0 211 77-380 204-428 (513)
78 pfam07726 AAA_3 ATPase family 99.1 8.5E-11 2.2E-15 96.1 3.5 111 115-244 1-112 (131)
79 KOG0733 consensus 99.1 4.9E-10 1.2E-14 90.8 7.0 130 80-220 514-643 (802)
80 PRK11361 acetoacetate metaboli 99.1 2.3E-09 5.7E-14 86.2 10.4 198 112-380 165-374 (457)
81 KOG2028 consensus 99.0 2E-09 5.2E-14 86.5 9.6 227 73-406 135-365 (554)
82 COG0465 HflB ATP-dependent Zn 99.0 1E-09 2.7E-14 88.5 7.9 129 78-220 151-284 (596)
83 PRK08853 DNA polymerase III su 99.0 3E-09 7.8E-14 85.3 10.2 112 79-219 18-146 (717)
84 PRK07994 DNA polymerase III su 99.0 4.8E-09 1.2E-13 83.9 10.0 112 79-219 18-146 (643)
85 pfam00493 MCM MCM2/3/5 family. 99.0 3.4E-09 8.6E-14 85.0 9.2 245 70-375 17-295 (327)
86 PRK07940 DNA polymerase III su 99.0 7.2E-09 1.8E-13 82.7 9.9 126 78-219 6-147 (395)
87 PRK05648 DNA polymerase III su 99.0 6.9E-09 1.7E-13 82.8 9.5 113 79-220 18-147 (705)
88 PRK07471 DNA polymerase III su 98.9 9.9E-09 2.5E-13 81.7 10.0 59 61-138 6-64 (363)
89 PRK08770 DNA polymerase III su 98.9 1.1E-08 2.9E-13 81.3 10.1 113 79-220 18-147 (663)
90 PRK12323 DNA polymerase III su 98.9 1.4E-08 3.5E-13 80.7 10.4 112 79-219 18-151 (721)
91 TIGR02902 spore_lonB ATP-depen 98.9 6.5E-09 1.7E-13 83.0 8.5 227 67-385 60-335 (532)
92 PRK06872 DNA polymerase III su 98.9 1.3E-08 3.3E-13 80.9 10.0 113 79-220 18-147 (696)
93 PRK00411 cdc6 cell division co 98.9 7.8E-08 2E-12 75.4 13.5 211 77-379 30-259 (394)
94 KOG0728 consensus 98.9 1.3E-08 3.2E-13 80.9 8.2 194 67-347 144-342 (404)
95 TIGR02881 spore_V_K stage V sp 98.8 1.7E-07 4.4E-12 73.0 13.5 222 72-386 2-242 (261)
96 PRK05564 DNA polymerase III su 98.8 7.2E-09 1.8E-13 82.6 6.4 108 78-219 5-120 (313)
97 COG1221 PspF Transcriptional r 98.8 3.7E-08 9.4E-13 77.7 9.8 223 69-383 70-310 (403)
98 pfam10431 ClpB_D2-small C-term 98.8 2.4E-08 6.1E-13 79.0 8.8 81 316-400 1-84 (89)
99 PRK07764 DNA polymerase III su 98.8 5.7E-09 1.5E-13 83.4 5.6 112 79-219 17-147 (775)
100 pfam06068 TIP49 TIP49 C-termin 98.8 6.2E-09 1.6E-13 83.1 5.8 63 77-149 24-88 (395)
101 KOG0735 consensus 98.8 1.7E-08 4.3E-13 80.1 7.8 130 79-221 669-800 (952)
102 PRK09111 DNA polymerase III su 98.8 4.3E-08 1.1E-12 77.2 9.8 113 79-220 25-159 (600)
103 COG2204 AtoC Response regulato 98.8 6.3E-08 1.6E-12 76.1 10.5 201 113-382 164-374 (464)
104 TIGR03346 chaperone_ClpB ATP-d 98.8 1.3E-07 3.4E-12 73.8 11.8 128 66-219 147-301 (852)
105 pfam00158 Sigma54_activat Sigm 98.8 6.4E-09 1.6E-13 83.0 4.2 135 79-243 1-142 (168)
106 KOG0727 consensus 98.8 1.4E-08 3.6E-13 80.6 5.5 97 112-217 188-284 (408)
107 KOG0740 consensus 98.7 6.2E-08 1.6E-12 76.1 8.5 108 78-194 154-261 (428)
108 KOG0737 consensus 98.7 1.5E-08 3.7E-13 80.5 5.3 121 65-193 81-201 (386)
109 KOG0651 consensus 98.7 3E-08 7.6E-13 78.3 6.8 103 107-218 159-262 (388)
110 PRK08058 DNA polymerase III su 98.7 1.2E-07 3E-12 74.1 9.4 112 79-219 7-137 (329)
111 KOG0741 consensus 98.7 2.4E-08 6.1E-13 79.0 5.4 102 114-218 257-363 (744)
112 KOG0736 consensus 98.7 4.2E-08 1.1E-12 77.3 6.6 240 79-403 674-926 (953)
113 TIGR01243 CDC48 AAA family ATP 98.7 2.5E-08 6.5E-13 78.8 5.4 99 112-219 239-337 (980)
114 PRK10865 protein disaggregatio 98.7 4E-07 1E-11 70.5 10.8 99 112-220 198-307 (857)
115 PRK11034 clpA ATP-dependent Cl 98.7 4.9E-07 1.2E-11 69.8 10.9 101 112-222 206-317 (758)
116 PRK07399 DNA polymerase III su 98.6 4.5E-07 1.1E-11 70.1 10.5 48 77-138 4-51 (314)
117 TIGR02640 gas_vesic_GvpN gas v 98.6 1.2E-08 3E-13 81.2 2.3 115 116-245 24-161 (265)
118 COG3829 RocR Transcriptional r 98.6 3.1E-07 7.8E-12 71.3 9.2 197 112-380 267-477 (560)
119 COG1224 TIP49 DNA helicase TIP 98.6 1.2E-07 3E-12 74.2 6.8 284 78-397 40-422 (450)
120 smart00350 MCM minichromosome 98.6 2.2E-07 5.6E-12 72.3 8.0 232 71-362 197-451 (509)
121 CHL00095 clpC Clp protease ATP 98.6 7.4E-07 1.9E-11 68.6 10.5 98 112-220 199-307 (823)
122 KOG0729 consensus 98.6 6.9E-08 1.8E-12 75.8 4.8 97 112-217 210-306 (435)
123 TIGR01243 CDC48 AAA family ATP 98.6 1.5E-07 3.9E-12 73.4 6.5 134 77-219 541-674 (980)
124 KOG2170 consensus 98.6 1.3E-06 3.2E-11 67.0 10.9 235 68-360 73-318 (344)
125 KOG0652 consensus 98.5 1.6E-07 4.1E-12 73.2 4.9 97 112-217 204-300 (424)
126 KOG0726 consensus 98.5 4.4E-07 1.1E-11 70.2 6.9 97 112-217 218-314 (440)
127 TIGR03345 VI_ClpV1 type VI sec 98.5 2.5E-06 6.3E-11 64.9 10.6 97 112-219 207-315 (852)
128 COG1239 ChlI Mg-chelatase subu 98.5 2.6E-06 6.7E-11 64.7 10.4 147 68-244 8-196 (423)
129 KOG0730 consensus 98.4 6.2E-06 1.6E-10 62.1 11.7 130 80-220 187-316 (693)
130 COG1474 CDC6 Cdc6-related prot 98.4 9.2E-06 2.3E-10 60.9 11.7 207 79-382 19-245 (366)
131 PRK08116 hypothetical protein; 98.4 4.9E-06 1.2E-10 62.8 10.3 190 12-245 5-215 (262)
132 COG0470 HolB ATPase involved i 98.4 6.8E-07 1.7E-11 68.8 5.1 115 78-219 2-136 (325)
133 COG2812 DnaX DNA polymerase II 98.3 7.5E-07 1.9E-11 68.5 4.2 115 79-222 18-149 (515)
134 KOG0739 consensus 98.3 3.7E-06 9.6E-11 63.6 7.6 163 66-250 110-284 (439)
135 COG0542 clpA ATP-binding subun 98.3 1.6E-05 4E-10 59.3 10.5 101 112-222 190-301 (786)
136 smart00382 AAA ATPases associa 98.3 1.5E-06 3.8E-11 66.5 4.9 81 113-193 2-93 (148)
137 PRK13531 regulatory ATPase Rav 98.2 3.5E-06 9.1E-11 63.8 6.8 117 69-218 12-133 (498)
138 TIGR03015 pepcterm_ATPase puta 98.2 1E-05 2.6E-10 60.6 9.0 82 301-404 177-261 (269)
139 COG1241 MCM2 Predicted ATPase 98.2 7.2E-06 1.8E-10 61.7 8.2 240 76-375 285-565 (682)
140 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.8E-05 4.5E-10 58.9 9.9 192 73-382 12-209 (226)
141 pfam00308 Bac_DnaA Bacterial d 98.2 4.8E-05 1.2E-09 55.9 11.7 200 75-383 7-217 (219)
142 COG3284 AcoR Transcriptional a 98.2 1.7E-05 4.3E-10 59.1 8.8 191 113-379 336-537 (606)
143 TIGR02928 TIGR02928 orc1/cdc6 98.2 6.9E-05 1.8E-09 54.8 11.9 99 78-191 18-149 (383)
144 pfam06309 Torsin Torsin. This 98.2 7.8E-06 2E-10 61.4 7.0 71 66-144 14-89 (127)
145 COG3604 FhlA Transcriptional r 98.1 6.3E-05 1.6E-09 55.1 10.6 220 77-382 223-456 (550)
146 PRK05642 DNA replication initi 98.1 6.4E-05 1.6E-09 55.0 10.6 192 72-378 15-212 (234)
147 PRK00131 aroK shikimate kinase 98.1 4.9E-06 1.3E-10 62.8 4.9 51 111-164 2-52 (175)
148 PRK08769 DNA polymerase III su 98.1 8.8E-06 2.3E-10 61.0 6.0 93 112-218 25-139 (319)
149 PRK06871 DNA polymerase III su 98.1 1.1E-05 2.9E-10 60.2 6.4 106 96-219 9-133 (324)
150 PRK08084 DNA replication initi 98.0 6.8E-05 1.7E-09 54.8 9.9 194 73-380 19-215 (235)
151 KOG1942 consensus 98.0 4.7E-05 1.2E-09 56.0 9.1 63 75-147 36-100 (456)
152 KOG0735 consensus 98.0 2.5E-05 6.4E-10 57.9 7.5 79 111-195 429-511 (952)
153 PRK13946 shikimate kinase; Pro 98.0 6.4E-06 1.6E-10 62.0 3.9 54 109-165 16-69 (195)
154 PRK07993 DNA polymerase III su 98.0 4E-05 1E-09 56.4 7.9 108 95-219 9-135 (334)
155 PRK08699 DNA polymerase III su 98.0 1.5E-05 3.9E-10 59.4 5.6 93 112-219 20-140 (325)
156 PRK05057 aroK shikimate kinase 97.9 2E-05 5.1E-10 58.6 5.6 54 112-168 3-56 (172)
157 PRK05917 DNA polymerase III su 97.9 1.8E-05 4.5E-10 58.9 5.2 93 112-219 18-122 (290)
158 KOG0732 consensus 97.9 1.1E-05 2.8E-10 60.3 3.9 100 110-219 295-401 (1080)
159 PRK06090 DNA polymerase III su 97.9 3E-05 7.6E-10 57.4 6.0 94 112-219 24-135 (319)
160 PRK08903 hypothetical protein; 97.9 0.00026 6.5E-09 50.8 10.4 66 300-381 139-206 (227)
161 PRK05707 DNA polymerase III su 97.9 4.1E-05 1.1E-09 56.4 6.3 105 95-219 10-133 (328)
162 PRK03731 aroL shikimate kinase 97.9 2.8E-05 7.2E-10 57.5 5.3 53 112-167 1-53 (172)
163 PRK06964 DNA polymerase III su 97.8 4.8E-05 1.2E-09 55.9 6.0 39 95-138 8-46 (342)
164 TIGR02639 ClpA ATP-dependent C 97.8 5.9E-05 1.5E-09 55.2 6.4 171 112-363 228-411 (774)
165 PHA02244 ATPase-like protein 97.8 5.5E-05 1.4E-09 55.5 6.1 105 116-245 122-231 (383)
166 TIGR02880 cbbX_cfxQ CbbX prote 97.8 0.001 2.6E-08 46.6 12.5 220 67-379 12-250 (284)
167 PRK13947 shikimate kinase; Pro 97.8 4.4E-05 1.1E-09 56.1 5.3 35 114-148 2-36 (171)
168 PRK13948 shikimate kinase; Pro 97.8 3.3E-05 8.4E-10 57.1 4.2 56 110-168 7-62 (182)
169 cd00464 SK Shikimate kinase (S 97.7 4.8E-05 1.2E-09 55.9 4.7 54 115-171 1-54 (154)
170 KOG0742 consensus 97.7 5.9E-05 1.5E-09 55.3 5.1 208 114-404 385-607 (630)
171 PRK13949 shikimate kinase; Pro 97.7 7.6E-05 1.9E-09 54.5 5.1 53 114-169 2-54 (169)
172 PRK07261 topology modulation p 97.7 4.9E-05 1.2E-09 55.8 4.0 49 116-165 3-51 (171)
173 PRK06893 DNA replication initi 97.7 0.0012 3E-08 46.1 11.0 191 73-379 13-208 (229)
174 PRK09183 transposase/IS protei 97.7 3.7E-05 9.4E-10 56.7 3.2 96 112-247 100-207 (258)
175 PRK04132 replication factor C 97.7 7E-05 1.8E-09 54.7 4.6 57 75-147 24-85 (863)
176 PRK00149 dnaA chromosomal repl 97.6 0.0014 3.5E-08 45.7 10.9 198 75-381 118-326 (447)
177 PRK12377 putative replication 97.6 0.00011 2.8E-09 53.3 5.3 54 74-137 72-125 (248)
178 KOG0744 consensus 97.6 6.2E-05 1.6E-09 55.1 4.0 130 115-259 179-321 (423)
179 PRK08118 topology modulation p 97.6 7.6E-05 1.9E-09 54.5 4.4 47 115-162 3-49 (167)
180 PRK08181 transposase; Validate 97.6 5.3E-05 1.4E-09 55.6 3.4 101 112-246 105-210 (269)
181 TIGR00972 3a0107s01c2 phosphat 97.6 0.00013 3.2E-09 52.9 4.7 63 110-176 23-89 (248)
182 PRK00091 miaA tRNA delta(2)-is 97.6 9.4E-05 2.4E-09 53.9 4.1 37 113-149 4-40 (304)
183 COG4650 RtcR Sigma54-dependent 97.5 0.00011 2.8E-09 53.4 4.4 89 112-219 207-309 (531)
184 PRK12724 flagellar biosynthesi 97.5 0.00037 9.5E-09 49.7 6.9 24 113-136 223-247 (432)
185 KOG0741 consensus 97.5 0.00014 3.7E-09 52.5 4.7 91 114-217 539-633 (744)
186 PRK06526 transposase; Provisio 97.5 6.7E-05 1.7E-09 54.9 2.9 95 112-246 97-202 (254)
187 KOG0989 consensus 97.5 0.00015 3.8E-09 52.4 4.5 106 75-218 35-155 (346)
188 COG0703 AroK Shikimate kinase 97.5 9.4E-05 2.4E-09 53.9 3.4 34 113-146 2-35 (172)
189 PRK11331 5-methylcytosine-spec 97.5 8.6E-05 2.2E-09 54.1 3.1 94 112-220 193-301 (459)
190 KOG0743 consensus 97.5 0.00026 6.7E-09 50.7 5.5 134 68-244 210-347 (457)
191 cd02021 GntK Gluconate kinase 97.4 0.00012 2.9E-09 53.2 3.4 31 116-146 2-32 (150)
192 PRK00625 shikimate kinase; Pro 97.4 0.00013 3.2E-09 53.0 3.6 32 115-146 2-33 (173)
193 TIGR01817 nifA Nif-specific re 97.4 0.00027 6.9E-09 50.7 5.2 143 65-243 200-350 (574)
194 TIGR03499 FlhF flagellar biosy 97.4 0.00037 9.4E-09 49.7 5.9 23 113-135 194-216 (282)
195 PRK07132 DNA polymerase III su 97.4 0.00016 4.1E-09 52.2 4.0 93 113-220 20-120 (303)
196 PRK12422 chromosomal replicati 97.4 0.0016 4.1E-08 45.3 9.1 207 74-385 109-324 (455)
197 PRK09825 idnK D-gluconate kina 97.4 0.00015 3.8E-09 52.5 3.7 33 113-145 3-35 (176)
198 KOG1808 consensus 97.4 0.00051 1.3E-08 48.7 6.3 118 113-250 440-566 (1856)
199 PRK11545 gntK gluconate kinase 97.4 0.00015 3.9E-09 52.4 3.4 33 113-145 8-40 (177)
200 PRK05703 flhF flagellar biosyn 97.4 0.00042 1.1E-08 49.3 5.4 24 112-135 209-232 (412)
201 KOG0991 consensus 97.3 0.00046 1.2E-08 49.0 5.5 115 66-217 21-138 (333)
202 pfam01695 IstB IstB-like ATP b 97.3 0.00017 4.3E-09 52.0 3.2 26 112-137 46-71 (178)
203 TIGR02974 phageshock_pspF psp 97.3 0.00031 7.8E-09 50.3 4.4 215 114-399 23-247 (349)
204 PRK07952 DNA replication prote 97.3 0.0013 3.3E-08 45.9 7.4 62 66-137 59-120 (242)
205 COG0324 MiaA tRNA delta(2)-iso 97.3 0.00031 8E-09 50.2 4.1 45 113-161 3-47 (308)
206 KOG0736 consensus 97.2 0.0026 6.7E-08 43.7 8.2 91 115-214 433-523 (953)
207 TIGR02782 TrbB_P P-type conjug 97.2 0.00027 7E-09 50.6 3.1 62 65-140 105-169 (315)
208 PRK06731 flhF flagellar biosyn 97.2 0.0014 3.4E-08 45.7 6.6 28 110-137 72-99 (270)
209 COG1419 FlhF Flagellar GTP-bin 97.2 0.00036 9.1E-09 49.8 3.4 25 112-136 202-227 (407)
210 TIGR00678 holB DNA polymerase 97.2 0.00082 2.1E-08 47.3 5.2 140 112-328 13-192 (216)
211 PRK06995 flhF flagellar biosyn 97.1 0.0058 1.5E-07 41.3 9.3 19 116-134 179-197 (404)
212 pfam00448 SRP54 SRP54-type pro 97.1 0.00058 1.5E-08 48.3 4.0 25 113-137 1-25 (196)
213 COG0593 DnaA ATPase involved i 97.1 0.0023 6E-08 44.1 7.1 182 74-360 85-275 (408)
214 PRK13406 bchD magnesium chelat 97.1 0.0075 1.9E-07 40.5 9.4 192 115-375 27-223 (584)
215 PRK13951 bifunctional shikimat 97.1 0.00055 1.4E-08 48.5 3.6 34 115-148 2-35 (488)
216 PRK06835 DNA replication prote 97.1 0.00043 1.1E-08 49.2 3.0 38 113-150 183-223 (330)
217 KOG0478 consensus 97.1 0.00019 5E-09 51.6 1.2 92 114-224 463-558 (804)
218 TIGR00174 miaA tRNA delta(2)-i 97.1 0.00048 1.2E-08 48.9 3.1 34 116-149 2-35 (307)
219 pfam01637 Arch_ATPase Archaeal 97.0 0.0056 1.4E-07 41.4 8.5 45 301-359 167-211 (223)
220 KOG2680 consensus 97.0 0.0013 3.3E-08 45.9 5.2 63 76-148 39-103 (454)
221 PRK09087 hypothetical protein; 97.0 0.0009 2.3E-08 47.0 4.3 63 65-142 10-73 (226)
222 cd03115 SRP The signal recogni 97.0 0.00077 2E-08 47.5 4.0 23 115-137 2-24 (173)
223 pfam05621 TniB Bacterial TniB 97.0 0.0039 9.8E-08 42.6 7.3 64 63-137 20-85 (302)
224 PRK08099 nicotinamide-nucleoti 96.9 0.0022 5.5E-08 44.3 5.6 62 113-174 231-292 (411)
225 PTZ00111 DNA replication licen 96.9 0.0017 4.4E-08 45.0 5.0 110 76-193 450-573 (916)
226 PTZ00112 origin recognition co 96.9 0.012 3E-07 39.2 9.1 213 70-381 260-495 (650)
227 cd01130 VirB11-like_ATPase Typ 96.9 0.00078 2E-08 47.4 3.1 27 112-138 24-50 (186)
228 COG0563 Adk Adenylate kinase a 96.9 0.00082 2.1E-08 47.3 3.2 27 114-140 1-27 (178)
229 TIGR02442 Cob-chelat-sub cobal 96.9 0.0016 4.1E-08 45.2 4.7 135 79-243 6-182 (688)
230 PRK12723 flagellar biosynthesi 96.9 0.0047 1.2E-07 42.0 7.0 24 112-135 173-196 (388)
231 PRK13900 type IV secretion sys 96.9 0.00077 2E-08 47.4 2.9 27 112-138 159-185 (332)
232 PRK11889 flhF flagellar biosyn 96.9 0.0026 6.7E-08 43.7 5.5 22 114-135 242-264 (436)
233 pfam00437 GSPII_E Type II/IV s 96.9 0.00095 2.4E-08 46.8 3.3 29 112-140 138-166 (283)
234 PRK08939 primosomal protein Dn 96.9 0.0058 1.5E-07 41.3 7.2 167 46-260 97-271 (306)
235 COG2074 2-phosphoglycerate kin 96.8 0.0043 1.1E-07 42.2 6.4 66 64-143 51-119 (299)
236 TIGR00602 rad24 checkpoint pro 96.8 0.00096 2.5E-08 46.8 2.9 29 110-138 111-143 (670)
237 pfam05673 DUF815 Protein of un 96.8 0.045 1.1E-06 35.1 11.5 208 79-375 30-238 (248)
238 PRK06217 hypothetical protein; 96.7 0.0016 4.1E-08 45.3 3.7 39 114-153 2-40 (185)
239 TIGR01313 therm_gnt_kin carboh 96.7 0.00094 2.4E-08 46.8 2.5 30 116-145 1-35 (175)
240 COG0464 SpoVK ATPases of the A 96.7 0.0017 4.2E-08 45.1 3.6 99 112-220 17-115 (494)
241 pfam01745 IPT Isopentenyl tran 96.7 0.0016 4E-08 45.3 3.4 34 116-149 4-37 (232)
242 PRK13851 type IV secretion sys 96.7 0.0013 3.3E-08 45.8 2.9 27 112-138 161-187 (343)
243 TIGR03167 tRNA_sel_U_synt tRNA 96.7 0.0016 4E-08 45.3 3.2 23 114-136 128-150 (311)
244 PRK05818 DNA polymerase III su 96.7 0.054 1.4E-06 34.5 11.1 93 112-218 7-115 (262)
245 COG5271 MDN1 AAA ATPase contai 96.7 0.075 1.9E-06 33.5 11.9 44 110-153 1170-1213(4600)
246 PRK07276 DNA polymerase III su 96.7 0.0052 1.3E-07 41.7 5.8 91 113-219 24-131 (290)
247 TIGR02329 propionate_PrpR prop 96.6 0.0035 8.8E-08 42.9 4.5 229 80-388 322-577 (658)
248 COG1484 DnaC DNA replication p 96.6 0.002 5.1E-08 44.6 3.2 38 112-149 104-144 (254)
249 PTZ00088 adenylate kinase 1; P 96.6 0.0022 5.5E-08 44.3 3.4 29 115-143 2-30 (225)
250 PRK00279 adk adenylate kinase; 96.6 0.0022 5.7E-08 44.2 3.4 28 115-142 2-29 (215)
251 TIGR03263 guanyl_kin guanylate 96.5 0.0022 5.7E-08 44.2 3.3 32 116-148 4-36 (180)
252 TIGR02528 EutP ethanolamine ut 96.5 0.0012 3.1E-08 46.1 1.7 22 114-135 1-22 (144)
253 TIGR02538 type_IV_pilB type IV 96.5 0.001 2.6E-08 46.6 1.1 26 115-140 328-353 (577)
254 COG3842 PotA ABC-type spermidi 96.4 0.0025 6.3E-08 43.9 2.9 33 106-138 23-56 (352)
255 TIGR02868 CydC ABC transporter 96.4 0.0023 5.8E-08 44.2 2.7 27 114-140 388-414 (566)
256 PRK06921 hypothetical protein; 96.4 0.0028 7.1E-08 43.5 3.1 26 112-137 115-140 (265)
257 PRK08154 anaerobic benzoate ca 96.4 0.0043 1.1E-07 42.2 3.8 37 112-148 132-168 (304)
258 cd01428 ADK Adenylate kinase ( 96.4 0.0035 8.9E-08 42.9 3.3 27 116-142 2-28 (194)
259 PRK02496 adk adenylate kinase; 96.3 0.0035 8.9E-08 42.9 3.3 27 114-140 2-28 (185)
260 PRK12726 flagellar biosynthesi 96.3 0.0054 1.4E-07 41.6 4.2 22 116-137 209-230 (407)
261 TIGR01420 pilT_fam twitching m 96.3 0.0022 5.7E-08 44.2 2.2 20 115-137 129-148 (350)
262 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0083 2.1E-07 40.2 5.0 58 72-138 46-103 (361)
263 PRK13833 conjugal transfer pro 96.3 0.0035 8.9E-08 42.9 3.1 26 112-137 143-168 (323)
264 KOG1969 consensus 96.3 0.0037 9.4E-08 42.7 3.1 36 112-147 324-360 (877)
265 CHL00179 consensus 96.2 0.0046 1.2E-07 42.0 3.5 75 84-158 1557-1647(2262)
266 PRK13894 conjugal transfer ATP 96.2 0.0041 1E-07 42.4 2.9 26 112-137 148-173 (320)
267 PRK04220 2-phosphoglycerate ki 96.2 0.025 6.5E-07 36.8 6.9 64 67-143 56-122 (306)
268 PRK11784 tRNA 2-selenouridine 96.2 0.0054 1.4E-07 41.5 3.5 25 111-135 135-159 (333)
269 CHL00026 ycf2 Ycf2 96.1 0.0052 1.3E-07 41.7 3.3 39 112-150 1629-1667(2286)
270 cd00071 GMPK Guanosine monopho 96.1 0.0051 1.3E-07 41.7 3.2 26 116-141 2-27 (137)
271 TIGR01187 potA polyamine ABC t 96.1 0.0023 5.8E-08 44.2 1.4 36 118-153 1-38 (331)
272 PRK06620 hypothetical protein; 96.1 0.009 2.3E-07 40.0 4.4 62 73-143 13-74 (214)
273 TIGR02173 cyt_kin_arch cytidyl 96.1 0.005 1.3E-07 41.8 3.1 28 116-143 3-30 (173)
274 KOG0477 consensus 96.0 0.0063 1.6E-07 41.0 3.4 120 66-191 438-559 (854)
275 CHL00178 consensus 96.0 0.0059 1.5E-07 41.3 3.2 67 84-150 1415-1495(2133)
276 PRK00023 cmk cytidylate kinase 96.0 0.0076 1.9E-07 40.5 3.7 31 113-143 3-34 (225)
277 TIGR02982 heterocyst_DevA ABC 96.0 0.0029 7.5E-08 43.4 1.6 41 116-156 34-88 (220)
278 PRK08727 hypothetical protein; 96.0 0.0077 2E-07 40.5 3.6 173 73-361 16-194 (233)
279 COG3854 SpoIIIAA ncharacterize 96.0 0.0053 1.3E-07 41.6 2.8 27 112-138 136-162 (308)
280 pfam00625 Guanylate_kin Guanyl 96.0 0.0066 1.7E-07 40.9 3.3 29 114-142 2-30 (182)
281 COG3283 TyrR Transcriptional r 96.0 0.012 3E-07 39.1 4.5 88 116-223 230-325 (511)
282 KOG1970 consensus 96.0 0.0096 2.4E-07 39.8 4.0 47 112-158 108-156 (634)
283 KOG3347 consensus 96.0 0.0072 1.8E-07 40.7 3.4 45 112-158 6-52 (176)
284 PRK00300 gmk guanylate kinase; 95.9 0.0075 1.9E-07 40.5 3.3 179 115-340 9-200 (208)
285 COG5271 MDN1 AAA ATPase contai 95.9 0.024 6E-07 37.0 5.9 115 116-251 891-1015(4600)
286 TIGR01526 nadR_NMN_Atrans nico 95.9 0.0078 2E-07 40.4 3.4 72 114-185 176-255 (346)
287 TIGR02915 PEP_resp_reg putativ 95.9 0.004 1E-07 42.4 1.9 190 110-366 160-361 (451)
288 PRK04182 cytidylate kinase; Pr 95.9 0.0077 2E-07 40.4 3.3 28 116-143 3-30 (178)
289 cd02020 CMPK Cytidine monophos 95.8 0.0062 1.6E-07 41.1 2.5 28 116-143 2-29 (147)
290 COG3839 MalK ABC-type sugar tr 95.8 0.0065 1.7E-07 41.0 2.5 29 110-138 25-54 (338)
291 PRK10867 signal recognition pa 95.8 0.042 1.1E-06 35.3 6.6 106 65-170 45-179 (453)
292 PRK07667 uridine kinase; Provi 95.7 0.012 3E-07 39.2 3.7 33 112-144 10-48 (190)
293 PRK12727 flagellar biosynthesi 95.7 0.023 5.9E-07 37.1 5.2 21 115-135 350-371 (557)
294 pfam03266 DUF265 Protein of un 95.7 0.015 3.9E-07 38.3 4.2 24 115-138 1-24 (168)
295 KOG0479 consensus 95.7 0.016 4.2E-07 38.2 4.2 117 63-191 283-411 (818)
296 COG2804 PulE Type II secretory 95.7 0.0098 2.5E-07 39.7 3.0 46 115-168 260-305 (500)
297 PRK11174 cysteine/glutathione 95.6 0.027 6.9E-07 36.6 5.2 46 311-361 411-462 (588)
298 smart00072 GuKc Guanylate kina 95.6 0.012 3.1E-07 39.0 3.4 31 113-143 2-32 (184)
299 pfam03215 Rad17 Rad17 cell cyc 95.6 0.011 2.8E-07 39.4 3.0 24 116-139 48-71 (490)
300 PRK13695 putative NTPase; Prov 95.6 0.021 5.2E-07 37.5 4.4 27 113-139 3-29 (174)
301 pfam06414 Zeta_toxin Zeta toxi 95.5 0.014 3.7E-07 38.6 3.4 40 112-151 11-51 (191)
302 PRK11160 cysteine/glutathione 95.5 0.0099 2.5E-07 39.7 2.6 26 114-139 368-393 (575)
303 PRK10416 cell division protein 95.5 0.097 2.5E-06 32.8 7.6 60 112-171 294-374 (499)
304 pfam00485 PRK Phosphoribulokin 95.5 0.012 3.1E-07 39.1 3.0 25 116-140 2-26 (196)
305 PRK05541 adenylylsulfate kinas 95.4 0.023 5.7E-07 37.2 4.1 36 115-150 9-47 (176)
306 PRK13542 consensus 95.4 0.043 1.1E-06 35.2 5.5 34 105-138 35-69 (224)
307 pfam10412 TrwB_AAD_bind Type I 95.4 0.019 4.8E-07 37.7 3.6 38 110-147 12-52 (386)
308 KOG3354 consensus 95.3 0.015 3.7E-07 38.5 3.0 34 112-145 11-44 (191)
309 COG4178 ABC-type uncharacteriz 95.3 0.014 3.6E-07 38.6 2.9 31 107-137 412-443 (604)
310 COG1102 Cmk Cytidylate kinase 95.3 0.014 3.6E-07 38.6 2.9 28 116-143 3-30 (179)
311 PRK11432 fbpC ferric transport 95.3 0.012 3E-07 39.2 2.4 30 109-138 27-57 (351)
312 TIGR00764 lon_rel ATP-dependen 95.2 0.035 9E-07 35.8 4.7 54 64-139 11-64 (662)
313 cd01131 PilT Pilus retraction 95.2 0.017 4.4E-07 38.0 3.0 25 116-140 4-28 (198)
314 TIGR03258 PhnT 2-aminoethylpho 95.2 0.01 2.5E-07 39.7 1.8 31 109-139 26-57 (362)
315 PRK03846 adenylylsulfate kinas 95.2 0.03 7.7E-07 36.3 4.2 59 113-171 24-90 (198)
316 PRK03839 putative kinase; Prov 95.1 0.023 5.8E-07 37.2 3.5 30 115-144 2-31 (180)
317 KOG0060 consensus 95.1 0.014 3.7E-07 38.5 2.4 26 112-137 460-485 (659)
318 cd03295 ABC_OpuCA_Osmoprotecti 95.1 0.011 2.9E-07 39.3 1.9 30 110-139 23-53 (242)
319 PTZ00301 uridine kinase; Provi 95.1 0.02 5.1E-07 37.5 3.2 26 113-138 2-28 (210)
320 COG0572 Udk Uridine kinase [Nu 95.1 0.024 6E-07 37.0 3.5 25 116-140 11-35 (218)
321 PRK11176 lipid transporter ATP 95.1 0.015 3.7E-07 38.5 2.4 50 110-159 364-425 (581)
322 cd03294 ABC_Pro_Gly_Bertaine T 95.1 0.013 3.4E-07 38.8 2.2 29 110-138 46-75 (269)
323 TIGR02533 type_II_gspE general 95.1 0.0079 2E-07 40.4 1.0 49 112-169 243-293 (495)
324 pfam04851 ResIII Type III rest 95.1 0.039 1E-06 35.5 4.5 25 113-137 18-42 (103)
325 pfam00910 RNA_helicase RNA hel 95.1 0.016 4.1E-07 38.2 2.6 22 116-137 1-22 (105)
326 PRK12337 2-phosphoglycerate ki 95.1 0.088 2.2E-06 33.0 6.3 50 81-143 243-292 (492)
327 TIGR03265 PhnT2 putative 2-ami 95.0 0.013 3.3E-07 38.9 2.0 30 110-139 26-56 (353)
328 TIGR01818 ntrC nitrogen regula 95.0 0.025 6.3E-07 36.9 3.4 107 115-239 160-274 (471)
329 PRK13657 cyclic beta-1,2-gluca 95.0 0.019 4.8E-07 37.7 2.8 25 114-138 362-386 (585)
330 COG3265 GntK Gluconate kinase 95.0 0.016 4.1E-07 38.2 2.4 27 119-145 1-27 (161)
331 PRK09270 frcK putative fructos 95.0 0.016 4E-07 38.3 2.3 41 116-156 37-77 (230)
332 TIGR03415 ABC_choXWV_ATP choli 95.0 0.015 3.9E-07 38.4 2.2 29 110-138 46-75 (382)
333 cd03296 ABC_CysA_sulfate_impor 95.0 0.016 4E-07 38.3 2.3 24 115-138 30-53 (239)
334 PRK10070 glycine betaine trans 95.0 0.015 3.9E-07 38.3 2.2 23 116-138 57-79 (400)
335 PRK10790 putative multidrug tr 95.0 0.022 5.7E-07 37.2 3.0 21 117-137 371-391 (593)
336 PRK13640 cbiO cobalt transport 94.9 0.013 3.4E-07 38.8 1.8 54 110-163 30-98 (283)
337 PRK10789 putative multidrug tr 94.9 0.022 5.5E-07 37.3 2.9 26 114-139 342-367 (569)
338 COG1117 PstB ABC-type phosphat 94.9 0.017 4.4E-07 38.0 2.2 43 116-162 36-79 (253)
339 PRK10247 putative ABC transpor 94.9 0.018 4.6E-07 37.9 2.4 30 109-138 28-58 (225)
340 pfam01202 SKI Shikimate kinase 94.9 0.038 9.7E-07 35.6 4.0 40 123-165 2-41 (158)
341 PRK13635 cbiO cobalt transport 94.8 0.018 4.6E-07 37.9 2.3 55 109-163 28-94 (279)
342 cd03223 ABCD_peroxisomal_ALDP 94.8 0.013 3.4E-07 38.8 1.6 33 106-138 19-52 (166)
343 cd03257 ABC_NikE_OppD_transpor 94.8 0.018 4.6E-07 37.8 2.3 31 108-138 25-56 (228)
344 cd02028 UMPK_like Uridine mono 94.8 0.023 5.8E-07 37.2 2.7 24 116-139 2-25 (179)
345 PRK00889 adenylylsulfate kinas 94.8 0.042 1.1E-06 35.3 4.1 57 115-171 6-70 (175)
346 COG1201 Lhr Lhr-like helicases 94.8 0.016 4.1E-07 38.2 1.9 18 113-130 37-54 (814)
347 cd03300 ABC_PotA_N PotA is an 94.8 0.017 4.4E-07 38.0 2.1 30 109-138 21-51 (232)
348 pfam01583 APS_kinase Adenylyls 94.8 0.03 7.6E-07 36.3 3.3 56 116-171 5-68 (157)
349 KOG1051 consensus 94.8 0.044 1.1E-06 35.2 4.1 105 66-192 176-294 (898)
350 cd02023 UMPK Uridine monophosp 94.8 0.03 7.6E-07 36.3 3.3 25 116-140 2-26 (198)
351 KOG2543 consensus 94.7 0.035 9E-07 35.8 3.6 41 110-150 27-68 (438)
352 PRK10744 phosphate transporter 94.7 0.026 6.5E-07 36.8 2.8 29 110-138 32-61 (257)
353 cd03301 ABC_MalK_N The N-termi 94.7 0.017 4.4E-07 38.0 1.9 32 108-139 20-52 (213)
354 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.02 5.1E-07 37.5 2.3 25 115-139 32-56 (218)
355 pfam08298 AAA_PrkA PrkA AAA do 94.7 0.079 2E-06 33.4 5.3 52 79-139 60-111 (358)
356 cd00046 DEXDc DEAD-like helica 94.7 0.018 4.5E-07 37.9 1.9 19 114-132 1-19 (144)
357 PRK11022 dppD dipeptide transp 94.7 0.018 4.6E-07 37.9 2.0 31 110-140 29-60 (327)
358 cd03297 ABC_ModC_molybdenum_tr 94.7 0.025 6.3E-07 36.9 2.7 29 110-138 20-48 (214)
359 cd03229 ABC_Class3 This class 94.7 0.021 5.4E-07 37.4 2.3 29 110-138 22-51 (178)
360 PRK00771 signal recognition pa 94.7 0.12 3.1E-06 32.1 6.1 72 64-137 45-121 (433)
361 PRK11000 maltose/maltodextrin 94.6 0.022 5.6E-07 37.3 2.3 31 108-138 23-54 (369)
362 COG3172 NadR Predicted ATPase/ 94.6 0.038 9.6E-07 35.6 3.4 45 114-158 9-53 (187)
363 PRK13808 adenylate kinase; Pro 94.6 0.037 9.4E-07 35.7 3.4 29 115-143 2-30 (297)
364 cd02027 APSK Adenosine 5'-phos 94.6 0.044 1.1E-06 35.2 3.7 54 116-169 2-63 (149)
365 TIGR01186 proV glycine betaine 94.5 0.026 6.7E-07 36.7 2.5 23 116-138 22-44 (372)
366 PRK05480 uridine kinase; Provi 94.5 0.032 8.1E-07 36.1 2.9 24 116-139 9-32 (209)
367 PRK13650 cbiO cobalt transport 94.5 0.025 6.3E-07 36.9 2.4 54 110-163 26-91 (276)
368 PRK10078 ribose 1,5-bisphospho 94.5 0.03 7.8E-07 36.3 2.8 41 116-158 5-47 (184)
369 cd03299 ABC_ModC_like Archeal 94.5 0.024 6E-07 37.0 2.2 31 108-138 19-50 (235)
370 PRK13648 cbiO cobalt transport 94.5 0.025 6.3E-07 36.9 2.3 55 108-162 29-95 (269)
371 cd03260 ABC_PstB_phosphate_tra 94.5 0.031 7.9E-07 36.2 2.8 31 109-139 21-52 (227)
372 pfam00406 ADK Adenylate kinase 94.5 0.025 6.3E-07 36.9 2.3 26 118-143 1-26 (186)
373 TIGR00968 3a0106s01 sulfate AB 94.5 0.021 5.3E-07 37.4 1.9 23 115-137 28-50 (241)
374 PRK09452 potA putrescine/sperm 94.5 0.024 6.1E-07 37.0 2.2 30 109-138 38-68 (378)
375 PRK11650 ugpC glycerol-3-phosp 94.5 0.021 5.2E-07 37.5 1.9 30 109-138 25-55 (358)
376 cd03289 ABCC_CFTR2 The CFTR su 94.5 0.031 7.9E-07 36.2 2.7 30 109-138 25-55 (275)
377 PRK11248 tauB taurine transpor 94.4 0.024 6.1E-07 37.0 2.1 31 108-138 21-52 (255)
378 PRK10418 nikD nickel transport 94.4 0.019 4.8E-07 37.7 1.6 25 115-139 31-55 (254)
379 PRK10851 sulfate/thiosulfate t 94.4 0.026 6.7E-07 36.7 2.3 30 109-138 23-53 (352)
380 cd02025 PanK Pantothenate kina 94.4 0.028 7E-07 36.6 2.3 39 117-155 3-41 (220)
381 cd01882 BMS1 Bms1. Bms1 is an 94.4 0.13 3.3E-06 31.9 5.7 28 110-137 36-63 (225)
382 COG4988 CydD ABC-type transpor 94.3 0.085 2.2E-06 33.2 4.7 47 113-159 347-404 (559)
383 cd03231 ABC_CcmA_heme_exporter 94.3 0.027 6.9E-07 36.6 2.2 29 110-138 22-51 (201)
384 PRK13632 cbiO cobalt transport 94.3 0.028 7.2E-07 36.5 2.3 57 108-164 30-98 (273)
385 cd04157 Arl6 Arl6 subfamily. 94.3 0.031 7.8E-07 36.2 2.5 20 115-134 1-20 (162)
386 PRK11144 modC molybdate transp 94.3 0.026 6.6E-07 36.8 2.1 31 108-138 18-49 (352)
387 COG1124 DppF ABC-type dipeptid 94.3 0.026 6.6E-07 36.8 2.1 29 110-138 29-58 (252)
388 cd03291 ABCC_CFTR1 The CFTR su 94.3 0.028 7.1E-07 36.5 2.2 30 110-139 59-89 (282)
389 pfam00270 DEAD DEAD/DEAH box h 94.3 0.026 6.6E-07 36.8 2.0 19 113-131 14-32 (167)
390 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.04 1E-06 35.5 3.0 32 108-139 28-60 (207)
391 COG4088 Predicted nucleotide k 94.3 0.032 8.3E-07 36.1 2.5 23 116-138 4-26 (261)
392 PRK11264 putative amino-acid A 94.3 0.028 7.1E-07 36.5 2.2 31 107-137 20-51 (248)
393 cd03253 ABCC_ATM1_transporter 94.3 0.027 6.8E-07 36.7 2.1 51 110-160 23-85 (236)
394 COG1122 CbiO ABC-type cobalt t 94.3 0.023 5.8E-07 37.2 1.7 57 108-164 24-93 (235)
395 COG1116 TauB ABC-type nitrate/ 94.2 0.033 8.5E-07 36.0 2.5 30 110-139 25-55 (248)
396 PRK13642 cbiO cobalt transport 94.2 0.03 7.5E-07 36.4 2.2 24 115-138 35-58 (277)
397 TIGR03375 type_I_sec_LssB type 94.2 0.031 8E-07 36.2 2.3 17 66-82 165-181 (694)
398 TIGR02788 VirB11 P-type DNA tr 94.2 0.035 8.9E-07 35.9 2.6 27 111-137 156-182 (328)
399 cd03293 ABC_NrtD_SsuB_transpor 94.2 0.03 7.6E-07 36.3 2.2 29 110-138 26-55 (220)
400 COG1132 MdlB ABC-type multidru 94.2 0.039 9.9E-07 35.5 2.8 30 110-139 351-381 (567)
401 cd03225 ABC_cobalt_CbiO_domain 94.2 0.033 8.5E-07 36.0 2.5 32 107-138 20-52 (211)
402 cd03228 ABCC_MRP_Like The MRP 94.2 0.031 7.8E-07 36.3 2.3 31 108-138 22-53 (171)
403 PRK09493 glnQ glutamine ABC tr 94.2 0.034 8.6E-07 36.0 2.4 30 109-138 22-52 (240)
404 PRK13633 cobalt transporter AT 94.2 0.03 7.7E-07 36.3 2.2 56 110-165 33-101 (281)
405 cd03244 ABCC_MRP_domain2 Domai 94.1 0.033 8.5E-07 36.0 2.4 31 109-139 25-56 (221)
406 TIGR01351 adk adenylate kinase 94.1 0.035 9E-07 35.8 2.5 68 115-182 1-89 (232)
407 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.036 9.1E-07 35.8 2.5 51 109-159 24-86 (238)
408 KOG0354 consensus 94.1 0.029 7.5E-07 36.4 2.0 25 113-137 76-100 (746)
409 pfam03969 AFG1_ATPase AFG1-lik 94.1 0.41 1E-05 28.4 7.9 27 112-138 60-86 (361)
410 cd03262 ABC_HisP_GlnQ_permease 94.1 0.036 9.2E-07 35.7 2.5 30 109-138 21-51 (213)
411 PRK10419 nikE nickel transport 94.1 0.025 6.4E-07 36.9 1.7 29 109-137 33-62 (266)
412 cd03261 ABC_Org_Solvent_Resist 94.1 0.033 8.5E-07 36.0 2.3 29 110-138 22-51 (235)
413 PRK13652 cbiO cobalt transport 94.1 0.03 7.7E-07 36.3 2.1 55 110-164 26-92 (277)
414 PRK06696 uridine kinase; Valid 94.1 0.057 1.4E-06 34.4 3.4 34 116-149 29-65 (227)
415 PRK09302 circadian clock prote 94.1 0.04 1E-06 35.5 2.6 51 301-353 350-401 (501)
416 COG1123 ATPase components of v 94.1 0.026 6.7E-07 36.7 1.7 75 305-389 445-523 (539)
417 PRK13646 cbiO cobalt transport 94.1 0.035 8.9E-07 35.9 2.3 30 109-138 28-58 (286)
418 cd04155 Arl3 Arl3 subfamily. 94.0 0.053 1.3E-06 34.6 3.1 21 115-135 16-36 (173)
419 cd03288 ABCC_SUR2 The SUR doma 94.0 0.04 1E-06 35.5 2.5 31 109-139 42-73 (257)
420 cd01127 TrwB Bacterial conjuga 94.0 0.062 1.6E-06 34.1 3.5 48 111-158 40-92 (410)
421 cd02024 NRK1 Nicotinamide ribo 94.0 0.046 1.2E-06 35.1 2.8 23 116-138 2-24 (187)
422 cd03245 ABCC_bacteriocin_expor 94.0 0.038 9.6E-07 35.6 2.3 31 109-139 25-56 (220)
423 PRK08233 hypothetical protein; 93.9 0.047 1.2E-06 35.0 2.8 23 116-138 6-28 (182)
424 COG1373 Predicted ATPase (AAA+ 93.9 0.14 3.6E-06 31.6 5.2 71 110-190 34-106 (398)
425 PRK10619 histidine/lysine/argi 93.9 0.034 8.7E-07 35.9 2.1 29 110-138 27-56 (257)
426 PRK11247 ssuB aliphatic sulfon 93.9 0.037 9.4E-07 35.7 2.2 31 108-138 32-63 (257)
427 pfam07931 CPT Chloramphenicol 93.9 0.11 2.8E-06 32.4 4.6 36 116-151 4-39 (174)
428 PRK09401 reverse gyrase; Revie 93.9 0.15 3.8E-06 31.5 5.3 27 111-137 91-117 (1176)
429 cd03256 ABC_PhnC_transporter A 93.9 0.038 9.7E-07 35.6 2.3 30 109-138 22-52 (241)
430 PRK13637 cbiO cobalt transport 93.9 0.035 9E-07 35.8 2.1 54 110-163 29-96 (287)
431 COG1428 Deoxynucleoside kinase 93.8 0.059 1.5E-06 34.2 3.2 27 116-142 7-33 (216)
432 COG1493 HprK Serine kinase of 93.8 0.032 8E-07 36.2 1.7 105 63-169 89-202 (308)
433 COG0552 FtsY Signal recognitio 93.8 0.32 8.3E-06 29.1 6.8 128 66-193 84-249 (340)
434 cd03246 ABCC_Protease_Secretio 93.8 0.044 1.1E-06 35.2 2.4 31 108-138 22-53 (173)
435 PRK11629 lolD lipoprotein tran 93.8 0.046 1.2E-06 35.0 2.5 29 110-138 31-60 (233)
436 cd03247 ABCC_cytochrome_bd The 93.8 0.049 1.2E-06 34.8 2.6 30 109-138 23-53 (178)
437 PRK13639 cbiO cobalt transport 93.8 0.043 1.1E-06 35.3 2.3 55 109-163 23-91 (275)
438 TIGR03608 L_ocin_972_ABC putat 93.8 0.047 1.2E-06 34.9 2.5 31 108-138 18-49 (206)
439 PRK13830 conjugal transfer pro 93.8 0.055 1.4E-06 34.5 2.9 23 114-136 457-479 (818)
440 cd03226 ABC_cobalt_CbiO_domain 93.7 0.041 1E-06 35.4 2.2 32 107-138 19-51 (205)
441 PRK11607 potG putrescine trans 93.7 0.035 9E-07 35.8 1.8 30 110-139 41-71 (377)
442 COG1061 SSL2 DNA or RNA helica 93.7 0.11 2.7E-06 32.5 4.3 31 113-143 55-85 (442)
443 PRK13651 cobalt transporter AT 93.7 0.041 1E-06 35.4 2.2 29 110-138 29-58 (304)
444 PRK11308 dppF dipeptide transp 93.7 0.031 7.9E-07 36.2 1.5 28 110-137 37-65 (327)
445 cd03290 ABCC_SUR1_N The SUR do 93.7 0.044 1.1E-06 35.2 2.3 32 108-139 21-53 (218)
446 PRK11831 putative ABC transpor 93.7 0.041 1E-06 35.4 2.1 31 108-138 28-59 (269)
447 PRK11860 bifunctional 3-phosph 93.7 0.05 1.3E-06 34.8 2.5 21 120-140 449-469 (662)
448 PRK13634 cbiO cobalt transport 93.7 0.041 1E-06 35.4 2.1 56 109-164 15-86 (276)
449 cd03250 ABCC_MRP_domain1 Domai 93.7 0.038 9.6E-07 35.6 1.9 29 110-138 27-56 (204)
450 PRK13644 cbiO cobalt transport 93.7 0.046 1.2E-06 35.0 2.3 53 110-162 24-89 (274)
451 cd03237 ABC_RNaseL_inhibitor_d 93.7 0.044 1.1E-06 35.2 2.2 24 116-139 28-51 (246)
452 PRK11147 ABC transporter ATPas 93.7 0.039 9.9E-07 35.5 1.9 26 114-139 346-371 (632)
453 PRK10636 putative ABC transpor 93.6 0.037 9.4E-07 35.7 1.8 25 114-138 339-363 (638)
454 PRK13477 bifunctional pantoate 93.6 0.051 1.3E-06 34.7 2.5 24 120-143 291-314 (512)
455 PRK12269 bifunctional cytidyla 93.6 0.052 1.3E-06 34.7 2.5 26 117-142 38-63 (863)
456 PRK10908 cell division protein 93.6 0.046 1.2E-06 35.0 2.3 30 109-138 23-53 (222)
457 PRK10771 thiQ thiamine transpo 93.6 0.048 1.2E-06 34.9 2.4 31 109-139 20-51 (233)
458 PRK13647 cbiO cobalt transport 93.6 0.048 1.2E-06 34.9 2.3 56 109-164 26-93 (273)
459 PRK13540 cytochrome c biogenes 93.6 0.048 1.2E-06 34.9 2.3 24 115-138 29-52 (200)
460 cd03251 ABCC_MsbA MsbA is an e 93.5 0.052 1.3E-06 34.7 2.4 50 110-159 24-85 (234)
461 cd03234 ABCG_White The White s 93.5 0.048 1.2E-06 34.9 2.2 33 106-138 25-58 (226)
462 PRK09473 oppD oligopeptide tra 93.5 0.039 9.8E-07 35.6 1.7 48 110-162 38-86 (330)
463 PRK10636 putative ABC transpor 93.5 0.16 4.1E-06 31.2 4.9 18 117-134 31-48 (638)
464 cd03298 ABC_ThiQ_thiamine_tran 93.5 0.041 1.1E-06 35.3 1.8 29 110-138 20-49 (211)
465 cd03248 ABCC_TAP TAP, the Tran 93.4 0.055 1.4E-06 34.5 2.4 29 110-138 36-65 (226)
466 PRK10584 putative ABC transpor 93.4 0.049 1.3E-06 34.8 2.2 30 109-138 31-61 (228)
467 PRK13539 cytochrome c biogenes 93.4 0.053 1.3E-06 34.6 2.3 32 107-138 21-53 (206)
468 cd01385 MYSc_type_IX Myosin mo 93.4 0.2 5.1E-06 30.6 5.2 137 65-219 55-208 (692)
469 cd03233 ABC_PDR_domain1 The pl 93.4 0.057 1.4E-06 34.4 2.4 31 108-138 27-58 (202)
470 COG1126 GlnQ ABC-type polar am 93.4 0.05 1.3E-06 34.8 2.2 28 110-137 24-52 (240)
471 PRK13898 type IV secretion sys 93.4 0.07 1.8E-06 33.7 2.9 25 113-137 446-470 (800)
472 PRK13543 cytochrome c biogenes 93.4 0.054 1.4E-06 34.6 2.3 31 108-138 31-62 (214)
473 pfam02367 UPF0079 Uncharacteri 93.4 0.078 2E-06 33.4 3.1 25 116-140 18-42 (123)
474 cd03214 ABC_Iron-Siderophores_ 93.4 0.054 1.4E-06 34.6 2.2 46 109-162 20-66 (180)
475 PRK06547 hypothetical protein; 93.4 0.088 2.3E-06 33.0 3.4 25 116-140 18-43 (184)
476 PRK13631 cbiO cobalt transport 93.3 0.054 1.4E-06 34.6 2.2 25 115-139 54-78 (320)
477 TIGR02322 phosphon_PhnN phosph 93.3 0.075 1.9E-06 33.5 3.0 25 116-140 4-29 (183)
478 cd01129 PulE-GspE PulE/GspE Th 93.3 0.069 1.8E-06 33.8 2.8 25 115-139 82-106 (264)
479 COG0630 VirB11 Type IV secreto 93.3 0.075 1.9E-06 33.5 3.0 27 112-138 142-168 (312)
480 PRK10261 glutathione transport 93.3 0.056 1.4E-06 34.4 2.3 23 116-138 45-67 (623)
481 PRK11124 artP arginine transpo 93.3 0.062 1.6E-06 34.1 2.5 28 110-137 24-52 (242)
482 PRK13549 xylose transporter AT 93.3 0.061 1.6E-06 34.2 2.5 23 115-137 33-55 (513)
483 CHL00131 ycf16 sulfate ABC tra 93.3 0.056 1.4E-06 34.4 2.2 27 109-135 27-54 (252)
484 PRK13853 type IV secretion sys 93.3 0.052 1.3E-06 34.7 2.0 23 113-135 426-448 (789)
485 PRK09580 sufC cysteine desulfu 93.3 0.052 1.3E-06 34.7 2.0 29 108-136 21-50 (248)
486 PRK10436 hypothetical protein; 93.3 0.078 2E-06 33.4 3.0 26 115-140 217-242 (461)
487 cd01673 dNK Deoxyribonucleosid 93.2 0.099 2.5E-06 32.7 3.5 28 116-143 2-29 (193)
488 cd03292 ABC_FtsE_transporter F 93.2 0.056 1.4E-06 34.4 2.2 31 108-138 21-52 (214)
489 cd03258 ABC_MetN_methionine_tr 93.2 0.05 1.3E-06 34.7 2.0 46 109-162 26-72 (233)
490 cd01126 TraG_VirD4 The TraG/Tr 93.2 0.076 1.9E-06 33.5 2.8 30 115-145 1-32 (384)
491 cd03236 ABC_RNaseL_inhibitor_d 93.2 0.046 1.2E-06 35.0 1.7 24 116-139 29-52 (255)
492 PRK13544 consensus 93.2 0.055 1.4E-06 34.5 2.1 30 109-138 22-52 (208)
493 PRK11701 phnK phosphonates tra 93.2 0.057 1.4E-06 34.4 2.2 31 108-138 26-57 (258)
494 COG1125 OpuBA ABC-type proline 93.2 0.064 1.6E-06 34.0 2.4 24 115-138 29-52 (309)
495 PRK13873 conjugal transfer ATP 93.2 0.068 1.7E-06 33.8 2.5 23 114-136 442-464 (815)
496 cd02030 NDUO42 NADH:Ubiquinone 93.2 0.087 2.2E-06 33.1 3.1 27 116-142 2-28 (219)
497 PRK13649 cbiO cobalt transport 93.2 0.066 1.7E-06 33.9 2.5 50 115-164 35-99 (280)
498 pfam03205 MobB Molybdopterin g 93.2 0.081 2.1E-06 33.3 2.9 22 116-137 3-24 (122)
499 PRK13645 cbiO cobalt transport 93.1 0.056 1.4E-06 34.4 2.1 50 115-164 39-104 (289)
500 TIGR00455 apsK adenylylsulfate 93.1 0.043 1.1E-06 35.3 1.5 77 116-204 22-100 (187)
No 1
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=100.00 E-value=0 Score=1185.19 Aligned_cols=406 Identities=69% Similarity=1.074 Sum_probs=381.5
Q ss_pred CCCCCCCCCCCCCEEEECCCCC--CHHHHH-----CCCCCCCCEECHHHHHHHHHHHHHHHHH-----------------
Q ss_conf 9878888888767256168988--865742-----2113899134317999999998987421-----------------
Q gi|254780271|r 1 MSKASNNGSVSKNALYCSFCGK--SQHEVR-----KLIAGPTVFICDECVELCMDIIREENKS----------------- 56 (424)
Q Consensus 1 m~~~~~~~~~~~~~~~CsfCg~--~~~~v~-----~li~g~~~~iC~~Ci~~~~~i~~~e~~~----------------- 56 (424)
|++.+.+ +.|+|||||| ++++|+ ++|+|++|||||+||++||++++++...
T Consensus 1 M~~~~~~-----k~L~CSFCGkpes~~~v~~riif~l~~g~~VyIC~eC~~lc~~~l~e~~~~~~~~~~gerd~~~~~~~ 75 (452)
T TIGR00382 1 MTKKNED-----KVLKCSFCGKPESQDEVRRRIIFKLIAGPGVYICDECIELCHDILEEELNSLLALKTGERDGTRLRRK 75 (452)
T ss_pred CCCCCCC-----CCEECCCCCCCCCHHHHCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHH
T ss_conf 9875667-----74122357887431201633789997289822751289988887766542000000254310235654
Q ss_pred -----HCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCC------------CCCCCCCE
Q ss_conf -----0000002699878999997420308599999999999865887521---210135------------52256835
Q gi|254780271|r 57 -----SITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAH---SSKSSN------------VELAKSNI 116 (424)
Q Consensus 57 -----~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~---~~~~~~------------~ei~~~NI 116 (424)
........||||++|+++||.||||||+|||++||||||||||++. ..+.++ +|+.||||
T Consensus 76 ~~~~~~~~~~~~~lP~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNI 155 (452)
T TIGR00382 76 ESKEVEEELELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNI 155 (452)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 20245666665247882799997213612310105254324112466653243045558840002354444433300662
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88407332176999999987185313101221111110355633035778876542277654223332233320023333
Q gi|254780271|r 117 LLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDN 196 (424)
Q Consensus 117 LliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~ 196 (424)
|||||||+|||+||+|||+.|||||+++|||+||||||||+|||||+.+|+|+|+|||++|++|||||||||||+++++|
T Consensus 156 LLiGPTGSGKTLLAqTLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSEN 235 (452)
T TIGR00382 156 LLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSEN 235 (452)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCCC
T ss_conf 45468885268999999987388742111110200664242288999999874145524527850898422310121577
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 33443210256898875310587010256556432224302431000123220004678988764123433-32111100
Q gi|254780271|r 197 PSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKAS-IGFSAVVK 275 (424)
Q Consensus 197 ~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~-~~~~~~~~ 275 (424)
+|+|||||||||||+|||++|||+++|||+||||||++++++|||+||||||||||+||++|+.+|..+.+ +||++...
T Consensus 236 ~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~ 315 (452)
T TIGR00382 236 PSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVK 315 (452)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 80112217554999999876032343175448868865768864764001105434448999988745553335455210
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf 000001-6899964105677752206898720784267211105789999874267799999999874498999968999
Q gi|254780271|r 276 DSDNRP-VGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDAL 354 (424)
Q Consensus 276 ~~~~~~-~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi 354 (424)
...... ..++|+++.|+||++|||||||+||||++..|++|++|+|++||++|+|||+|||++||++|+|+|.|++||+
T Consensus 316 ~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl 395 (452)
T TIGR00382 316 KKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEAL 395 (452)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 04578789999975171112210555101105340202787887899998525444488999997164561134558889
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEE
Q ss_conf 999995510678742368999999677740276789841999837785587881687
Q gi|254780271|r 355 REIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNV 411 (424)
Q Consensus 355 ~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~ 411 (424)
++||+.|+.++||||+||+|+|.+|+|+|||+|+++++++|+||+++|.++..|.++
T Consensus 396 ~~IA~~A~~RkTGARGLRsI~E~~lLDvMfeLPs~~~~~kv~it~~~v~~~~~p~L~ 452 (452)
T TIGR00382 396 KAIAKKALERKTGARGLRSIVEGLLLDVMFELPSLEDLEKVVITKETVLKQSEPLLI 452 (452)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEHHHHCCCCCCCCC
T ss_conf 999999985076751578999999875314788611575678707764266445679
No 2
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=0 Score=1094.29 Aligned_cols=406 Identities=72% Similarity=1.120 Sum_probs=392.4
Q ss_pred CCCCCEEEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 88767256168988865742211389913431799999999898742100000026998789999974203085999999
Q gi|254780271|r 9 SVSKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKV 88 (424)
Q Consensus 9 ~~~~~~~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKka 88 (424)
.++++.++||||||++++|.+||+||++||||+||++|++++++|...........+|||++|++|||+|||||++|||+
T Consensus 4 ~~~~~~~~CsfCgk~~~~v~~li~g~~~~IC~~Cv~~~~~i~~~~~~~~~~~~~~~lp~P~eI~~~LD~yVIGQ~~AKk~ 83 (411)
T PRK05342 4 GDSKKLLYCSFCGKSQHEVRKLIAGPGVYICDECIELCNEIIREELEESAEKELSELPTPKEIKAHLDQYVIGQERAKKV 83 (411)
T ss_pred CCCCCEEEECCCCCCHHHHCEEEECCCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88996388089999854403055089848728999999999997531243332346999799999862140284888899
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999998658875212-1013552256835884073321769999999871853131012211111103556330357788
Q gi|254780271|r 89 LAVAVHNHYKRLAHS-SKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLL 167 (424)
Q Consensus 89 vAvAv~nh~rR~~~~-~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~ 167 (424)
+||||||||||++.. ....++||.|||||||||||||||+||||||++++|||+++|||+|||+||||+|||||+++|+
T Consensus 84 lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~Ll 163 (411)
T PRK05342 84 LSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLL 163 (411)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHHH
T ss_conf 99999999999860213356652134538998999977889999999986999899861200126745607999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 76542277654223332233320023333334432102568988753105870102565564322243024310001232
Q gi|254780271|r 168 QAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFI 247 (424)
Q Consensus 168 ~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi 247 (424)
++|++++++|++||||+||||||++++++.++|||||||||||+|||++||+.+++|+++|||||+++++.|||+|||||
T Consensus 164 q~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI 243 (411)
T PRK05342 164 QAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFI 243 (411)
T ss_pred HHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEE
T ss_conf 98288899883682888502345424788888777651248999999875871411888777787765167614717999
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 20004678988764123433321111000000016899964105677752206898720784267211105789999874
Q gi|254780271|r 248 CGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSE 327 (424)
Q Consensus 248 ~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILte 327 (424)
|||||+||++++.+|+++.++||++...........++++++.|+||++|||||||+||||++|.|++|+++||++||||
T Consensus 244 ~gGAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~~ILte 323 (411)
T PRK05342 244 CGGAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALVRILTE 323 (411)
T ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 11553358999986357887677887664110005678762798788873883776146640546244799999999658
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCC
Q ss_conf 26779999999987449899996899999999551067874236899999967774027678984199983778558788
Q gi|254780271|r 328 PKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKAC 407 (424)
Q Consensus 328 pknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~~ 407 (424)
|+|||+|||++||+++||+|+||++|+++||+.|++++||||+||+|||++|+|+||++|+++++++|+||+++|+++.+
T Consensus 324 PkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRsIlE~iLld~MFelPs~~~v~~v~It~~~V~~~~~ 403 (411)
T PRK05342 324 PKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRSILEEVLLDVMFELPSREDVEKVVITEEVVEGKSK 403 (411)
T ss_pred CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHCCCCC
T ss_conf 74159999999997549679986899999999999847574577999999978875448898997099988799779998
Q ss_pred EEEEECC
Q ss_conf 1687256
Q gi|254780271|r 408 PLNVYTD 414 (424)
Q Consensus 408 p~~~~~~ 414 (424)
|++++..
T Consensus 404 P~~~~~~ 410 (411)
T PRK05342 404 PLLIYKS 410 (411)
T ss_pred CEEEECC
T ss_conf 2698417
No 3
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=1055.04 Aligned_cols=402 Identities=71% Similarity=1.116 Sum_probs=388.3
Q ss_pred CCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHC-CHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 68988865742211389913431799999999898742100-00002699878999997420308599999999999865
Q gi|254780271|r 18 SFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSI-TKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNH 96 (424)
Q Consensus 18 sfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~-~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh 96 (424)
|||||++++|++||+||++||||+||++|++|++++..... ......+|||+||+++||+|||||+.|||++|||||||
T Consensus 1 SFCgksq~~v~kliagp~v~ICdeCielc~~ii~ee~~~~~~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNH 80 (408)
T COG1219 1 SFCGKSQHEVRKLIAGPGVYICDECIELCNDIIREELKEALDEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNH 80 (408)
T ss_pred CCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHEECCHHHHCEEEEEEEHH
T ss_conf 98775578999885089856659999999999998653100101221599869999986524326254310346641068
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88752121013552256835884073321769999999871853131012211111103556330357788765422776
Q gi|254780271|r 97 YKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVER 176 (424)
Q Consensus 97 ~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~ 176 (424)
|+|++......++|+.|||||||||||||||+||+|||++|||||+++|||++||+||||+|||+|+.+|++++++||++
T Consensus 81 YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~r 160 (408)
T COG1219 81 YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVER 160 (408)
T ss_pred HHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 89986048877635320317998889975779999999984898475144412106635500899999999876458888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHH
Q ss_conf 54223332233320023333334432102568988753105870102565564322243024310001232200046789
Q gi|254780271|r 177 AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLD 256 (424)
Q Consensus 177 a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~ 256 (424)
|++||||+||||||+++++++|+|||||||||||+|||++||+++++||+||||||+|++++|||+||||||||||+||+
T Consensus 161 AerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~Gle 240 (408)
T COG1219 161 AERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLE 240 (408)
T ss_pred HHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHH
T ss_conf 82885998510254205789872343673589999999970751023999888798420488737634678244010399
Q ss_pred HHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 887641234333211110000-0001689996410567775220689872078426721110578999987426779999
Q gi|254780271|r 257 RIISARGEKASIGFSAVVKDS-DNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQ 335 (424)
Q Consensus 257 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQ 335 (424)
+++.+|.++.++||++..... ......++++++.|+||++|||||||+||||+++.|++|++++|++|||||+|+|+||
T Consensus 241 kiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQ 320 (408)
T COG1219 241 KIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQ 320 (408)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHH
T ss_conf 99998626874245664453444412889987548687887088388726663264610159999999972651789999
Q ss_pred HHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
Q ss_conf 99998744989999689999999955106787423689999996777402767898419998377855878816872565
Q gi|254780271|r 336 YQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDR 415 (424)
Q Consensus 336 y~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~ 415 (424)
|++||+++||+|+|+++|+++||+.|.+++||||+||+|||.+|+|+|||+|+++++++|+||+++|.+..+|.+++...
T Consensus 321 Yq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l~~~~~ 400 (408)
T COG1219 321 YQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLLIYASP 400 (408)
T ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCEEEECCC
T ss_conf 99996446916997489999999999984335357999999999998852788678508997688847888872762243
Q ss_pred CHHH
Q ss_conf 1145
Q gi|254780271|r 416 RDEK 419 (424)
Q Consensus 416 ~~~~ 419 (424)
....
T Consensus 401 ~~~~ 404 (408)
T COG1219 401 SKEK 404 (408)
T ss_pred CCCC
T ss_conf 3424
No 4
>KOG0745 consensus
Probab=100.00 E-value=0 Score=852.37 Aligned_cols=399 Identities=51% Similarity=0.849 Sum_probs=366.4
Q ss_pred EEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHH----CC-----HHCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 5616898886574221138991343179999999989874210----00-----00026998789999974203085999
Q gi|254780271|r 15 LYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSS----IT-----KSHEGIPNPQEILRVLDEYVIGQGQA 85 (424)
Q Consensus 15 ~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~----~~-----~~~~~~~tP~eI~~~Ld~yVIGQ~~A 85 (424)
++|..|++.++.+..+.++.++..| .|...+......+.+.. +. ...+.+|||++|++|||+|||||+.|
T Consensus 75 ~~~~~~~s~~~~~~t~~~s~~f~~~-k~~~sfv~~~~~~~~~~~~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745 75 LQCPKCTSQCTPLETFVSSQGFILC-KCNKSFVVLYEADGAKPGKLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred CCCCCCCCCCCCHHHCCCCCCEEEE-ECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECHHHH
T ss_conf 3464113567736552577872785-123020110110268888878665655433579988699998866661035542
Q ss_pred HHHHHHHHHHHHHHHHCCC---------------------------------------------CCCCCCCCCCCEEEEE
Q ss_conf 9999999986588752121---------------------------------------------0135522568358840
Q gi|254780271|r 86 KKVLAVAVHNHYKRLAHSS---------------------------------------------KSSNVELAKSNILLVG 120 (424)
Q Consensus 86 KkavAvAv~nh~rR~~~~~---------------------------------------------~~~~~ei~~~NILliG 120 (424)
||++||||||||||+.+.. ...++++.||||||+|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred HHEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCEEEEC
T ss_conf 20232035677888741348888887654430367788520025432013655421010355543454154035479977
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 73321769999999871853131012211111103556330357788765422776542233322333200233333344
Q gi|254780271|r 121 PTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSIT 200 (424)
Q Consensus 121 PTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~ 200 (424)
|||+|||+||++||+++||||+++|||++|++||||+|||++|.+|++.|.++|++|++||||+||+|||+.+.++....
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEHHHHHCCCCCCCCCC
T ss_conf 88876438999999970887687325522005534542999999999972578998826738876012441367654544
Q ss_pred CCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC-----
Q ss_conf 321025689887531058701025655643222430243100012322000467898876412343332111100-----
Q gi|254780271|r 201 RDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVK----- 275 (424)
Q Consensus 201 ~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~----- 275 (424)
||||||||||+|||++||++++||..+.++++..+.++|||+||||||+|||.+|++++.+|....++||++...
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred CCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCCHH
T ss_conf 45662669999999852627702677877789998589713666888034323569898876300001567888742001
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf --------000001689996410567775220689872078426721110578999987426779999999987449899
Q gi|254780271|r 276 --------DSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVEL 347 (424)
Q Consensus 276 --------~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L 347 (424)
.......++++..+.+.||+.|||||||+|||||+|.|++|++++|++|||||+|||++||++||.+++|+|
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf 10346673046778899986346321355267287716652576524268888999873554668999999855577469
Q ss_pred EECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
Q ss_conf 99689999999955106787423689999996777402767898419998377855878816872565
Q gi|254780271|r 348 VFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDR 415 (424)
Q Consensus 348 ~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~ 415 (424)
.||++|++.||+.|.+++||||+||+|||++|+++||++|+ +++..|+||+++|.+..+|.+.+.-.
T Consensus 474 ~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPG-SdI~~V~Vdee~v~g~~~~~~s~~~~ 540 (564)
T KOG0745 474 HFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPG-SDIKAVLVDEEAVKGEKEPGYSRKIL 540 (564)
T ss_pred EECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC-CCEEEEEECHHHHCCCCCCCCCHHHH
T ss_conf 86699999999998761434678999999997640145788-75479996178845667776231011
No 5
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=100.00 E-value=0 Score=844.58 Aligned_cols=296 Identities=44% Similarity=0.693 Sum_probs=270.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 98789999974203085999999999998658875212101355225683588407332176999999987185313101
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
.|||+||++||+|||||++|||+||||+||||||+| +++..+.||+|||||||||||||||||||||||++++||+|||
T Consensus 1 ~tPreiV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~-L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVE 79 (463)
T TIGR00390 1 MTPREIVAELDKYIIGQDEAKKAVAIALRNRYRRSQ-LEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (463)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 984358875144220636678899999886677612-8711135658743043278898544799999998448914666
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-------------------------------------------------
Q ss_conf 2211111103556330357788765422776-------------------------------------------------
Q gi|254780271|r 146 ATTLTEAGYVGEDVENIILKLLQAADYNVER------------------------------------------------- 176 (424)
Q Consensus 146 aT~~TE~GYvG~Dvesii~~L~~~a~~~v~~------------------------------------------------- 176 (424)
|||||||||||+|||||+|||+..|...|+.
T Consensus 80 AtKfTEVGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~ 159 (463)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKD 159 (463)
T ss_pred EEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHH
T ss_conf 41001102142410036787899999999998899889999999988999872888988776667223000566874024
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780271|r 177 -------------------------------------------------------------------------------- 176 (424)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (424)
T Consensus 160 e~~~~~~~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~kkkr~l~ik~ 239 (463)
T TIGR00390 160 EEESSREALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDKKKKRKLKIKE 239 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHH
T ss_conf 68999999999999987766303664671589986137871267505888556776789999862045320001145699
Q ss_pred ---------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf ---------------------------54223332233320023333334432102568988753105870102565564
Q gi|254780271|r 177 ---------------------------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR 229 (424)
Q Consensus 177 ---------------------------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr 229 (424)
.+.|||||||||||+.++. .+.+.|||.||||..||.++||..++.
T Consensus 240 A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~-e~S~~DvSrEGVQRDlLPiVEGS~V~T------ 312 (463)
T TIGR00390 240 AKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGK-ESSGADVSREGVQRDLLPIVEGSTVNT------ 312 (463)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEE------
T ss_conf 9999899988733696664389999998478289853035421688-867888765565101142022666431------
Q ss_pred CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC
Q ss_conf 32224302431000123220004678988764123433321111000000016899964105677752206898720784
Q gi|254780271|r 230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV 309 (424)
Q Consensus 230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPi 309 (424)
.+..|+|+|||||+.|||. -. +||||||||||||||
T Consensus 313 -----KyG~VkTdHiLFIAaGAF~----------------------------------lA-----KPSDLIPELQGRfPi 348 (463)
T TIGR00390 313 -----KYGSVKTDHILFIAAGAFH----------------------------------LA-----KPSDLIPELQGRFPI 348 (463)
T ss_pred -----ECCEEECCHHHHHHHHHHC----------------------------------CC-----CCCCCCCHHHCCCCH
T ss_conf -----0010422157876752320----------------------------------27-----776666311066737
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 267211105789999874267799999999874498999968999999995510-----678742368999999677740
Q gi|254780271|r 310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMF 384 (424)
Q Consensus 310 iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimF 384 (424)
||+|+.||.+||+||||+|+|||++||+|||++|||+|.|+||||+.||+.||. +|+||||||||||++|+|++|
T Consensus 349 rVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~ay~~N~~teniGARRLHTv~E~lledisF 428 (463)
T TIGR00390 349 RVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAELAYNVNQKTENIGARRLHTVLERLLEDISF 428 (463)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 78767632999999620834368999999887627640335568999999999816442334650466899999987512
Q ss_pred CCCCCCCCCEEEECHHHHCCCCCEEEEECC
Q ss_conf 276789841999837785587881687256
Q gi|254780271|r 385 ELPMLKGVSSVIISDDVVKGKACPLNVYTD 414 (424)
Q Consensus 385 e~P~~~~~~~v~Id~~~V~~~~~p~~~~~~ 414 (424)
+||+.++ ++|+||.+||..++..+....|
T Consensus 429 ea~D~~~-~~~~I~~~YV~~kL~~~~~~~d 457 (463)
T TIGR00390 429 EAPDVSG-QKVTITADYVEKKLGDLVADED 457 (463)
T ss_pred CCCCCCC-CEEEECHHHHHHHHHHHHHHCC
T ss_conf 6668634-3245078999999878873022
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=100.00 E-value=0 Score=816.35 Aligned_cols=298 Identities=43% Similarity=0.683 Sum_probs=269.3
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
=+||++||+|||+|||||++|||+|||||||||||++ .+...+.||.|||||||||||||||||||||||+++|||+||
T Consensus 3 ~ltP~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~-l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQ-LPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8998999998536010827766787778877787531-662212334643168878888667899999999848985875
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------------------------------------------------
Q ss_conf 12211111103556330357788765422---------------------------------------------------
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYN--------------------------------------------------- 173 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~--------------------------------------------------- 173 (424)
|||+|||+||||+||||||+||+++|..+
T Consensus 82 eATk~TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~ 161 (442)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRK 161 (442)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 21310003435643788999999999999999999999999999999999998558655555554542023678999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780271|r 174 -------------------------------------------------------------------------------- 173 (424)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (424)
T Consensus 162 ~Lr~G~Ldd~~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~e 241 (442)
T PRK05201 162 KLREGELDDKEIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQE 241 (442)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98658866555788615777777778875155666799876402788874046469999999999999862488999999
Q ss_pred -HHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCC
Q ss_conf -7765-42233322333200233333344321025689887531058701025655643222430243100012322000
Q gi|254780271|r 174 -VERA-QRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGA 251 (424)
Q Consensus 174 -v~~a-~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~ga 251 (424)
++++ ++||||+||||||+.++.+ .++|||+||||+.||+++||+.++.. +..|+|+||||||+||
T Consensus 242 Ai~~aEq~GIVFIDEIDKIa~~~~~--~g~DVS~EGVQrdLLpivEGt~V~tK-----------~G~V~TdhILFIasGA 308 (442)
T PRK05201 242 AIERVEQNGIVFIDEIDKIAKRGEG--SGPDVSREGVQRDLLPLVEGSTVSTK-----------YGMVKTDHILFIASGA 308 (442)
T ss_pred HHHHHHHCCCEEECHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHCCCCCCCC-----------CCCCCCCEEEEECCCC
T ss_conf 9998876170451146565303578--89897733078887887538855567-----------7760255034550450
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 46789887641234333211110000000168999641056777522068987207842672111057899998742677
Q gi|254780271|r 252 FAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNA 331 (424)
Q Consensus 252 f~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepkns 331 (424)
|. .. +|+|||||||||||+||+|++|+++||++|||||+||
T Consensus 309 Fh----------------------------------~s-----KPSDLIPEl~GRlPv~v~L~~L~~~dl~~ILtepkns 349 (442)
T PRK05201 309 FH----------------------------------VA-----KPSDLIPELQGRFPIRVELDALTEEDFVRILTEPKAS 349 (442)
T ss_pred CC----------------------------------CC-----CCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHH
T ss_conf 01----------------------------------47-----8202249871755058882449999999996786157
Q ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCC
Q ss_conf 99999999874498999968999999995510-----6787423689999996777402767898419998377855878
Q gi|254780271|r 332 LIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKGKA 406 (424)
Q Consensus 332 LikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~~~ 406 (424)
|+|||++||++|||+|+||++|+++||+.|++ +||||||||||||++|+|+||++|++++ ++|+||++||++++
T Consensus 350 L~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~E~vl~d~~Fe~p~~~~-~~v~I~~~~V~~~l 428 (442)
T PRK05201 350 LIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDRSG-EKITIDAAYVDEKL 428 (442)
T ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CEEEECHHHHHHHH
T ss_conf 89999999862496799847999999999998514476677378899999998986146889999-77998899999999
Q ss_pred CEEEEECCCC
Q ss_conf 8168725651
Q gi|254780271|r 407 CPLNVYTDRR 416 (424)
Q Consensus 407 ~p~~~~~~~~ 416 (424)
.+++...|..
T Consensus 429 ~~i~~~~Dls 438 (442)
T PRK05201 429 GDLVKDEDLS 438 (442)
T ss_pred HHHHHCCCCH
T ss_conf 8876355605
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=753.94 Aligned_cols=297 Identities=43% Similarity=0.680 Sum_probs=269.1
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
-.||+|||++||+|||||++|||+|||||||||||+| .+...+.||+|+|||||||||||||||||||||++++||+||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~q-L~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQ-LEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8887999999876740717778899999998999975-478776225755358888888768899999999848983788
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH------------------------------------------------
Q ss_conf 12211111103556330357788765422776------------------------------------------------
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVER------------------------------------------------ 176 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~------------------------------------------------ 176 (424)
+||+|||+||||+|||||+|||++.+..+|+.
T Consensus 82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk 161 (444)
T COG1220 82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK 161 (444)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 76421340325645899999999999999999999999999999999999998669875546667300002679999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780271|r 177 -------------------------------------------------------------------------------- 176 (424)
Q Consensus 177 -------------------------------------------------------------------------------- 176 (424)
T Consensus 162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~ 241 (444)
T COG1220 162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIK 241 (444)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99758877617999972267875346899857899999999998646887303665699999987777887626999999
Q ss_pred -------HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf -------5422333223332002333333443210256898875310587010256556432224302431000123220
Q gi|254780271|r 177 -------AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICG 249 (424)
Q Consensus 177 -------a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~ 249 (424)
.+.||||+||||||+.++. +..+|||.||||..||.++||+.++. .+..|.|.+||||+.
T Consensus 242 ~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T-----------KyG~VkTdHILFIas 308 (444)
T COG1220 242 QEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST-----------KYGPVKTDHILFIAS 308 (444)
T ss_pred HHHHHHHHHCCEEEEEHHHHHHHCCC--CCCCCCCHHHHCCCCCCCCCCCEEEC-----------CCCCCCCCEEEEEEC
T ss_conf 99999988569089734667874378--89988664320102103105754431-----------544401443788714
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 00467898876412343332111100000001689996410567775220689872078426721110578999987426
Q gi|254780271|r 250 GAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPK 329 (424)
Q Consensus 250 gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepk 329 (424)
|||. -. +||||||||||||||||+|++||.+||+||||||+
T Consensus 309 GAFh----------------------------------~s-----KPSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~ 349 (444)
T COG1220 309 GAFH----------------------------------VA-----KPSDLIPELQGRFPIRVELDALTKEDFERILTEPK 349 (444)
T ss_pred CCEE----------------------------------CC-----CHHHCCHHHCCCCCEEEECCCCCHHHHHHHHCCCH
T ss_conf 8200----------------------------------37-----81321766627773488704489989999963760
Q ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf 7799999999874498999968999999995510-----67874236899999967774027678984199983778558
Q gi|254780271|r 330 NALIKQYQCLFDMEDVELVFHEDALREIARCAIA-----HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKG 404 (424)
Q Consensus 330 nsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-----~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~ 404 (424)
|||+|||++||+||||+|+||+||++.||+.||+ +||||||||||||++|+|+||+||++.+ ++|+||++||+.
T Consensus 350 ~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFeA~d~~g-~~v~Id~~yV~~ 428 (444)
T COG1220 350 ASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSG-QKVTIDAEYVEE 428 (444)
T ss_pred HHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEECHHHHHH
T ss_conf 7899999999731583488537999999999998554300011788999999999870705877899-758975899999
Q ss_pred CCCEEEEECCC
Q ss_conf 78816872565
Q gi|254780271|r 405 KACPLNVYTDR 415 (424)
Q Consensus 405 ~~~p~~~~~~~ 415 (424)
++..+....|.
T Consensus 429 ~l~~l~~n~DL 439 (444)
T COG1220 429 KLGDLVANEDL 439 (444)
T ss_pred HHHHHHCCCCH
T ss_conf 99877517415
No 8
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=0 Score=396.39 Aligned_cols=277 Identities=26% Similarity=0.377 Sum_probs=226.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853131012
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
.-+.+...|-.-|.|||+|-.+|+-|| ||-+..-...+.++. +.||.||||||||||||.||+.|+++|.+.||
T Consensus 487 ~L~~L~~~L~~kIfGQD~AI~~lv~ai----K~SrAGl~~~nkP~G--SFLF~GPTGVGKTElak~LA~~LGv~l~RFDM 560 (774)
T TIGR02639 487 KLKNLEKELKAKIFGQDEAIEQLVSAI----KRSRAGLGEPNKPVG--SFLFVGPTGVGKTELAKQLAEELGVHLLRFDM 560 (774)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH----HHHHHHCCCCCCCEE--EEEEECCCCCCHHHHHHHHHHHHCCHHCCCCC
T ss_conf 872044763013151589999999999----998742477888168--88864798962578899999970820010465
Q ss_pred HHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 2111111----035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 147 TTLTEAG----YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 147 T~~TE~G----YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
|+|||.+ .+|.++++|.++-.+.....|++.||++++||||||+|++ +.|.|||+||- .+
T Consensus 561 SEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpD--------------I~NILLQVMD~--At 624 (774)
T TIGR02639 561 SEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPD--------------IYNILLQVMDY--AT 624 (774)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHH--------------HHHHHHHHHCC--CE
T ss_conf 044689999874168888513167772122331288535423466663133--------------66678766335--43
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf 256556432224302431000123220004678988764123433321111000-0000168999641056777522068
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKD-SDNRPVGEVLRNLESEDLVKFGLIP 301 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~DL~~~gliP 301 (424)
+++..|||..|++-|.|||||. || +.+++..+||+..... ... .-++.-|-|
T Consensus 625 LTDN~GrKaDFRNVILIMTSNa-----Ga---------~E~~~~~iGF~~~~~~~~~~-------------~Aikk~F~P 677 (774)
T TIGR02639 625 LTDNNGRKADFRNVILIMTSNA-----GA---------REMSKNPIGFGGERVEDKSE-------------KAIKKLFSP 677 (774)
T ss_pred EECCCCCEEEECCEEEEECCCC-----CC---------CCCCCCCCCCCCCCCHHHHH-------------HHHHHHCCC
T ss_conf 4058885763113688840370-----01---------02367764425554123348-------------889731587
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH---
Q ss_conf 98720784267211105789999874267799999999874498999968999999995510678742368999999---
Q gi|254780271|r 302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI--- 378 (424)
Q Consensus 302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i--- 378 (424)
||.|||+-+|.|++|+.+.+.||+.. .+.+.+.-|...+|+|++|++|+.|||++||++++|||+|.++|+.-
T Consensus 678 EFRNRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~ 753 (774)
T TIGR02639 678 EFRNRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKK 753 (774)
T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 42013346441699889999999999----99999975530653787647899999863678110554489998874125
Q ss_pred --HHHHHHCCCCCCCCCEEEEC
Q ss_conf --67774027678984199983
Q gi|254780271|r 379 --LLDTMFELPMLKGVSSVIIS 398 (424)
Q Consensus 379 --LedimFe~P~~~~~~~v~Id 398 (424)
+.++.|---. +| .+|.|+
T Consensus 754 ~L~dEILFG~LK-kG-G~v~~~ 773 (774)
T TIGR02639 754 PLSDEILFGKLK-KG-GEVKIS 773 (774)
T ss_pred HHHHHHCCCCCC-CC-CEEEEE
T ss_conf 765442057001-67-268873
No 9
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=0 Score=348.19 Aligned_cols=286 Identities=24% Similarity=0.371 Sum_probs=217.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871---85313101
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMAD 145 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vd 145 (424)
..+-+.|.+.||||++|-++||-|++...-.++ +.+.+| ..+||+|||||||||+|++||+.| .-.+++.|
T Consensus 501 ~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~----~~~rPi--gsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D 574 (823)
T CHL00095 501 IHMEETLHKRIIGQDEAVVAVSKAIRRARVGLK----NPNRPI--ASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD 574 (823)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----CCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 878887877840769999999999999970899----899974--68998789988779999999999747820258853
Q ss_pred HHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2211111-----------10355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 146 ATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 146 aT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
|+.|+|. ||||.+-+.. ....|++.|+++|++|||||+|+. |++.|||
T Consensus 575 MSEy~E~hsvsrLIGaPPGYVGy~eGG~-------LTeaVrr~PysVvLfDEIEKAHpd--------------V~nilLQ 633 (823)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQ-------LTEAVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQ 633 (823)
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCC-------HHHHHHCCCCEEEEECHHHHCCHH--------------HHHHHHH
T ss_conf 5101554207674589987667787882-------019887199869986213113889--------------9998876
Q ss_pred HCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 1058701025655643222430243100012322000467898876412343332111100000-001689996410567
Q gi|254780271|r 215 IMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSD-NRPVGEVLRNLESED 293 (424)
Q Consensus 215 ileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D 293 (424)
+++.+ .+++..||+..+.++++|+|||+ |+ +.+.+ ...+.||........ .....+.++......
T Consensus 634 vlDdG--~LtD~~Gr~vdF~NtIIImTSNl-----Gs-----~~i~~--~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~ 699 (823)
T CHL00095 634 ILDDG--RLTDSKGRTIDFKNTLIIMTSNL-----GS-----KVIEK--GGGSLGFKLLEDGTKLDEKQYKRLSNLVNEE 699 (823)
T ss_pred HCCCC--CCCCCCCCEEECEEEEEEECCCC-----CH-----HHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 51688--43489999884310399971650-----55-----88874--1344343334454322023589999999999
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744989999689999999955106787423689
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
++..|.|||+||++.+|.|+||+++++.+|. +..++..++.|...||.|++|++|+++||+.+|++.+|||+|++
T Consensus 700 -l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv----~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R 774 (823)
T CHL00095 700 -LKQYFRPEFLNRLDEIIVFRPLTKDEVWEIA----EIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRR 774 (823)
T ss_pred -HHHHCCHHHHHHCCEEEEECCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf -9843798787327827861899999999999----99999999999968985998889999999958797768136889
Q ss_pred HHHHHHHHHHHCCCC---CCCCCEEEECHH
Q ss_conf 999996777402767---898419998377
Q gi|254780271|r 374 ILEKILLDTMFELPM---LKGVSSVIISDD 400 (424)
Q Consensus 374 IiE~iLedimFe~P~---~~~~~~v~Id~~ 400 (424)
++++.++++.-+.-- .....+|.||-+
T Consensus 775 ~I~~~i~~~ls~~il~g~~~~g~~v~v~~~ 804 (823)
T CHL00095 775 AIMRLLEDPLAEEVLSFKIKPGDSLVVDVD 804 (823)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 999998899999997488899698999975
No 10
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=0 Score=346.20 Aligned_cols=295 Identities=23% Similarity=0.344 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf 78999997420308599999999999865887521210135522568358840733217699999998718531310122
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADAT 147 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT 147 (424)
...+-..|.+.||||++|-.+||-|++...-.++ +.+.++ ..+||+|||||||||+|++||+.|..++++.||+
T Consensus 449 l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~----~~~rPi--gsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS 522 (758)
T PRK11034 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLG----HEHKPV--GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC----CCCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9989999877874549999999999999863888----999970--5899978998777999999999986677214266
Q ss_pred HHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 11111-----------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 148 TLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 148 ~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
.|+|. ||||.+-+..+ ...|++.++++|++|||||+++. |++.|||++
T Consensus 523 Ey~e~hsvsrLiGaPPGYVGy~eGG~L-------te~Vr~~PysVvL~DEIEKAhpd--------------V~nilLQvl 581 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLL-------TDAVIKHPHAVLLLDEIEKAHPD--------------VFNLLLQVM 581 (758)
T ss_pred HHCCHHHHHHHCCCCCCCCCCCCCCCC-------CHHHHHCCCEEEEEHHHHHHCHH--------------HHHHHHHHC
T ss_conf 531201477744899866676777701-------28787398779973367563989--------------999887323
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 58701025655643222430243100012322000467898876412343332111100000001689996410567775
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVK 296 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~ 296 (424)
+.+ .+++..||+..+.++++|+|||+ |+-. ....++||....... +.. ..++
T Consensus 582 D~G--~LtD~~Gr~vdF~NtiIImTSN~-----Ga~~---------~~~~~~gf~~~~~~~------~~~------~~l~ 633 (758)
T PRK11034 582 DNG--TLTDNNGRKADFRNVVLVMTTNA-----GVRE---------TERKSIGLIHQDNST------DAM------EEIK 633 (758)
T ss_pred CCC--CCCCCCCCEEECEEEEEEEECCC-----CHHH---------HHHHCCCCCCCCCHH------HHH------HHHH
T ss_conf 778--30179999884400199982561-----7487---------864214755420359------999------9999
Q ss_pred HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 22068987207842672111057899998742677999999998744989999689999999955106787423689999
Q gi|254780271|r 297 FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILE 376 (424)
Q Consensus 297 ~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE 376 (424)
..|.|||.||++.+|.|+||+++++.+|+. ..+++.++.|...||+|+||++|+++||+.+|+.++|||+|+++++
T Consensus 634 ~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~ 709 (758)
T PRK11034 634 KIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHCCHHHHHHCCEEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 547986772367478638899999999999----9999999999978985998899999999848894537112889999
Q ss_pred HHHHHHHHCCCC---CCCCCEEEECHHHHCCCCCEEEEECCCCHHHHHHC
Q ss_conf 996777402767---89841999837785587881687256511455531
Q gi|254780271|r 377 KILLDTMFELPM---LKGVSSVIISDDVVKGKACPLNVYTDRRDEKANVS 423 (424)
Q Consensus 377 ~iLedimFe~P~---~~~~~~v~Id~~~V~~~~~p~~~~~~~~~~~~~~s 423 (424)
+.+++++-+.-- .+...+|.|+-+ .++.+-.+.+...++++++.+
T Consensus 710 ~~i~~~La~~il~g~~~~g~~v~v~~~--~~~~~l~f~~~~~~~~~~~~~ 757 (758)
T PRK11034 710 DNLKKPLANELLFGSLVDGGQVTVALD--KEKNELTYGFQSAQKHKAEAA 757 (758)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEE--CCCCEEEEEEECCCCCCHHHC
T ss_conf 998899999997298889898999997--899879999605775202214
No 11
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=341.50 Aligned_cols=278 Identities=23% Similarity=0.330 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEE
Q ss_conf 878999997420308599999999999865887521210135522568358840733217699999998718---53131
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID---VPFTM 143 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~---~PF~~ 143 (424)
.-..+-+.|.+.||||++|-.+||-|+ ||-+..-.+.+.++. .+||+|||||||||+|++||..|. .++++
T Consensus 481 kll~le~~L~~rViGQd~AV~~v~~aI----rraRaGL~dp~rPig--sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR 554 (786)
T COG0542 481 KLLNLERRLKKRVIGQDEAVEAVSDAI----RRARAGLGDPNRPIG--SFLFLGPTGVGKTELAKALAEALFGDEQALIR 554 (786)
T ss_pred HHHHHHHHHHCCEECHHHHHHHHHHHH----HHHHCCCCCCCCCCE--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 998679997365017399999999999----998569999998735--78866788656999999999996599744455
Q ss_pred HHHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 012211111-----------103556330357788765422776542233322333200233333344321025689887
Q gi|254780271|r 144 ADATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQAL 212 (424)
Q Consensus 144 vdaT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~L 212 (424)
+||+.|+|. ||||.+.+.. ....|++.|+++|++|||||++++ |+|.|
T Consensus 555 ~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~-------LTEaVRr~PySViLlDEIEKAHpd--------------V~nil 613 (786)
T COG0542 555 IDMSEYMEKHSVSRLIGAPPGYVGYEEGGQ-------LTEAVRRKPYSVILLDEIEKAHPD--------------VFNLL 613 (786)
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCEECCCCC-------HHHHHHCCCCEEEEECHHHHCCHH--------------HHHHH
T ss_conf 456877778779987279998720065540-------037660699868884126440889--------------99999
Q ss_pred HHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 53105870102565564322243024310001232200046789887641234333211110000000168999641056
Q gi|254780271|r 213 LKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESE 292 (424)
Q Consensus 213 Lkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
||+++.+. .++..||+..++++++|+|||+ |+- .+... . ++ ......+...... .
T Consensus 614 LQVlDdGr--LTD~~Gr~VdFrNtiIImTSN~-----Gs~-~i~~~--------~-~~-------~~~~~~~~~~~~v-~ 668 (786)
T COG0542 614 LQVLDDGR--LTDGQGRTVDFRNTIIIMTSNA-----GSE-EILRD--------A-DG-------DDFADKEALKEAV-M 668 (786)
T ss_pred HHHHCCCC--EECCCCCEEECCEEEEEEECCC-----CHH-HHHHH--------C-CC-------CCCCHHHHHHHHH-H
T ss_conf 99846780--5548998884300289984502-----659-89753--------1-34-------3210046788999-9
Q ss_pred HHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 77752206898720784267211105789999874267799999999874498999968999999995510678742368
Q gi|254780271|r 293 DLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLR 372 (424)
Q Consensus 293 DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lr 372 (424)
+.++..|.|||.||++.++.|++|+++++.+|. ...+++..+.|...|+.|+|+++|.++||+.+|++.+|||+|+
T Consensus 669 ~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~ 744 (786)
T COG0542 669 EELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLR 744 (786)
T ss_pred HHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999853899898512617850679989999999----9999999999986895599888999999996468776736799
Q ss_pred HHHHHHHHHHHHCCCC---CCCCCEEEECHH
Q ss_conf 9999996777402767---898419998377
Q gi|254780271|r 373 SILEKILLDTMFELPM---LKGVSSVIISDD 400 (424)
Q Consensus 373 tIiE~iLedimFe~P~---~~~~~~v~Id~~ 400 (424)
+++++-+++++-+.-- ..+..+|.|+.+
T Consensus 745 R~Iq~~i~~~La~~iL~~~~~~~~~v~v~~~ 775 (786)
T COG0542 745 RAIQQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999999899999998466579967999951
No 12
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=0 Score=341.86 Aligned_cols=272 Identities=22% Similarity=0.345 Sum_probs=210.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871---85313101
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMAD 145 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vd 145 (424)
..+.+.|.+.||||++|-++||-|++...-.++ +.+.+| ..+||+|||||||||+|++||+.| .-.+++.|
T Consensus 560 ~~le~~L~~rViGQd~AI~~v~~aI~~sraGL~----dp~rPi--GsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriD 633 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPI--GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----CCCCCE--EEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEEC
T ss_conf 999999987852809999999999999863899----999973--89998689878889999999999838933425625
Q ss_pred HHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2211111-----------10355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 146 ATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 146 aT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
|+.|+|. ||||.+-+. .....|++.||++|++|||||+++. |++.|||
T Consensus 634 MSEy~E~hsVSrLiGaPPGYVGy~eGG-------~LTeaVRr~PySVvLfDEIEKAHpd--------------V~nilLQ 692 (857)
T PRK10865 634 MSEFMEKHSVSRLVGAPPGYVGYEEGG-------YLTEAVRRRPYSVILLDEVEKAHPD--------------VFNILLQ 692 (857)
T ss_pred CHHHCCCHHHHHHCCCCCCCCCCCCCC-------CHHHHHHHCCCEEEEEHHHHHHCHH--------------HHHHHHH
T ss_conf 332113012767558998766757788-------1109998198778863257663858--------------9999998
Q ss_pred HCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10587010256556432224302431000123220004678988764123433321111000000016899964105677
Q gi|254780271|r 215 IMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDL 294 (424)
Q Consensus 215 ileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL 294 (424)
+++.+ .+++..||+..+.++++|+|||+ |+ +.+. ... ++.. . ....... .+.
T Consensus 693 vlD~G--~LtD~~Gr~vdF~NtIIImTSN~-----Gs-~~i~----~~~-----~~~~--~--------~~~~~~~-~~~ 744 (857)
T PRK10865 693 VLDDG--RLTDGQGRTVDFRNTVVIMTSNL-----GS-DLIQ----ERF-----GELD--Y--------AHMKELV-LGV 744 (857)
T ss_pred HHCCC--EEECCCCCEEEEEEEEEEECCCH-----HH-HHHH----HHC-----CCCC--H--------HHHHHHH-HHH
T ss_conf 70368--32079998885133489964623-----36-9998----650-----6556--6--------8899999-999
Q ss_pred HHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 75220689872078426721110578999987426779999999987449899996899999999551067874236899
Q gi|254780271|r 295 VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSI 374 (424)
Q Consensus 295 ~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtI 374 (424)
+...|.|||+|||+.+|.|+||+++++.+|+. ..++..++.|...||+|+++++|+++||+.+|+..+|||+|+++
T Consensus 745 l~~~F~PEFlnRiD~iv~F~pL~~~~l~~Iv~----~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~~GARpl~r~ 820 (857)
T PRK10865 745 VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQ----IQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRA 820 (857)
T ss_pred HHHHCCHHHHHCCCEEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 98647988882378489827899999999999----99999999999779849988899999998488977471378999
Q ss_pred HHHHHHHHHHCCCC---CCCCCEEEECH
Q ss_conf 99996777402767---89841999837
Q gi|254780271|r 375 LEKILLDTMFELPM---LKGVSSVIISD 399 (424)
Q Consensus 375 iE~iLedimFe~P~---~~~~~~v~Id~ 399 (424)
+++.++++.-+.-- .+...+|.||-
T Consensus 821 I~~~i~~~ls~~il~g~~~~g~~i~v~~ 848 (857)
T PRK10865 821 IQQQIENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 9999889999999728889969899997
No 13
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.4e-45 Score=339.43 Aligned_cols=275 Identities=24% Similarity=0.350 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEH
Q ss_conf 7899999742030859999999999986588752121013552256835884073321769999999871---8531310
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMA 144 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~v 144 (424)
...+-+.|.+.||||++|-++||-|++...-.+ .+.+.+| ..+||+|||||||||+|++||+.| .-.+++.
T Consensus 557 l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl----~d~~rPi--gsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~ 630 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTARAGL----EDPRKPL--GVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC----CCCCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 886799999997284999999999999987179----9999985--6899878998778999999999971986114784
Q ss_pred HHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12211111-----------1035563303577887654227765422333223332002333333443210256898875
Q gi|254780271|r 145 DATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALL 213 (424)
Q Consensus 145 daT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LL 213 (424)
||+.|+|. ||||.+-+. .....|++.|+++|++|||||+++. |++.||
T Consensus 631 DMSEy~E~hsvsrLiGaPPGYVGy~eGG-------~LTe~Vrr~PysVvLfDEIEKAHpd--------------V~nilL 689 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEGG-------VLTEAVRRKPYSVVLLDEVEKAHPD--------------VLELFY 689 (852)
T ss_pred CCHHHCCHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHHCCCEEEEECHHHHCCHH--------------HHHHHH
T ss_conf 2243210436878638999766748777-------2109888099868886113002889--------------999999
Q ss_pred HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 31058701025655643222430243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r 214 KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED 293 (424)
Q Consensus 214 kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 293 (424)
|+|+.+ .+++..||+..+.++++|+|||+ |+- .+... ..+.. .....+.+.......
T Consensus 690 QvlD~G--~LtD~~Gr~vdF~NtIIImTSN~-----Gs~----~i~~~-----~~~~~-------~~~~~~~~~~~v~~~ 746 (852)
T TIGR03345 690 QVFDKG--VMEDGEGREIDFKNTVILLTSNA-----GSD----LIMAL-----CADPE-------TAPDPEALLEALRPE 746 (852)
T ss_pred HHHCCC--EEECCCCCEEECEEEEEEECCCH-----HHH----HHHHH-----HCCCC-------CCCCHHHHHHHHHHH
T ss_conf 872467--77579999884521299975724-----479----99864-----03765-------556689999999999
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744-98999968999999995510678742368
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DVELVFHEDALREIARCAIAHKTGARGLR 372 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV~L~FtdeAi~~IA~~A~~~niGAR~Lr 372 (424)
|.+ .|.|||+||+ .+|.|+||+++++.+|+. ..++...+.|... ||+|++|++|+++||+.+|+..+|||+|+
T Consensus 747 l~~-~F~PEFlnRi-~ii~F~~L~~~~l~~Iv~----~~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~~~~GARpl~ 820 (852)
T TIGR03345 747 LLK-VFKPAFLGRM-TVIPYLPLDDDVLAAIVR----LKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNID 820 (852)
T ss_pred HHH-HCCHHHHCCE-EEEEECCCCHHHHHHHHH----HHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 983-4798886456-689736899999999999----9999999999862896899889999999982899776864389
Q ss_pred HHHHHHHHHHHHCC-----CCCCCCCEEEEC
Q ss_conf 99999967774027-----678984199983
Q gi|254780271|r 373 SILEKILLDTMFEL-----PMLKGVSSVIIS 398 (424)
Q Consensus 373 tIiE~iLedimFe~-----P~~~~~~~v~Id 398 (424)
+++++.+++++-+. -.-..+++|.+|
T Consensus 821 r~I~~~i~~~la~~iL~~~~~g~~~~~i~~~ 851 (852)
T TIGR03345 821 AILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999998899999999987089972488815
No 14
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.7e-44 Score=332.04 Aligned_cols=271 Identities=22% Similarity=0.354 Sum_probs=210.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHH
Q ss_conf 99999742030859999999999986588752121013552256835884073321769999999871---853131012
Q gi|254780271|r 70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADA 146 (424)
Q Consensus 70 eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vda 146 (424)
.+-+.|.+.||||++|-.+||-|++...-.++.+.+ ++ -.+||+|||||||||+|+.||+.| .-.+++.||
T Consensus 558 ~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~r----P~--GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM 631 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNR----PI--GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM 631 (852)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC----CC--EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 788889989717099999999999999718888999----74--589986788776899999999998558520698430
Q ss_pred HHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 211111-----------103556330357788765422776542233322333200233333344321025689887531
Q gi|254780271|r 147 TTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215 (424)
Q Consensus 147 T~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLki 215 (424)
|.|+|. ||||.+-+..+. ..|++.++++|++|||||+++. |++.|||+
T Consensus 632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lt-------e~vr~~PysVvL~DEIEKAh~~--------------V~~~lLQi 690 (852)
T TIGR03346 632 SEYMEKHSVARLIGAPPGYVGYEEGGQLT-------EAVRRKPYSVVLFDEVEKAHPD--------------VFNVLLQV 690 (852)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCEEC-------HHHHHCCCEEEEECCHHHHCHH--------------HHHHHHHH
T ss_conf 44301224778558999767768787423-------9898198879985305430768--------------99999988
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 05870102565564322243024310001232200046789887641234333211110000000168999641056777
Q gi|254780271|r 216 MEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV 295 (424)
Q Consensus 216 leg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~ 295 (424)
++.+ .+.+..||+..+.++++|+|||+ |+-.-.. .+.++ . .+....... +.+
T Consensus 691 lD~G--~ltD~~Gr~vdF~NtiiimTSN~-----Ga~~i~~---------~~~~~--~---------~~~~~~~~~-~~~ 742 (852)
T TIGR03346 691 LDDG--RLTDGQGRTVDFRNTVIIMTSNL-----GSQFIQE---------LAGGD--D---------YEEMREAVM-EVL 742 (852)
T ss_pred HCCC--EEECCCCCEEEEEEEEEEEECCC-----CHHHHHH---------HCCCC--C---------HHHHHHHHH-HHH
T ss_conf 2367--43079998885355689861540-----6599974---------11455--5---------799999999-999
Q ss_pred HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 52206898720784267211105789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r 296 KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375 (424)
Q Consensus 296 ~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi 375 (424)
+..|.|||.||++.+|.|+||+++++.+|+.. .++...+.|...||+|+++++++++|++.+++.++|||+|++++
T Consensus 743 ~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~~~GAR~l~r~i 818 (852)
T TIGR03346 743 RAHFRPEFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAI 818 (852)
T ss_pred HHHCCHHHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 96589989963786898378999999999999----99999999997798499888999999984889774715699999
Q ss_pred HHHHHHHHHCCCC---CCCCCEEEECH
Q ss_conf 9996777402767---89841999837
Q gi|254780271|r 376 EKILLDTMFELPM---LKGVSSVIISD 399 (424)
Q Consensus 376 E~iLedimFe~P~---~~~~~~v~Id~ 399 (424)
++.+++++-+.-- .....+|.||-
T Consensus 819 ~~~i~~~la~~iL~g~~~~g~~v~v~~ 845 (852)
T TIGR03346 819 QREIENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 999889999999748889959899997
No 15
>KOG1051 consensus
Probab=99.98 E-value=8.1e-32 Score=243.34 Aligned_cols=266 Identities=24% Similarity=0.335 Sum_probs=195.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871---85313101
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMAD 145 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vd 145 (424)
..+.+.|.+.|+||++|-++||-|++.-..+...+ -..--+||.||||||||+||++||.++ .--|+.+|
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD 626 (898)
T KOG1051 554 KKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD 626 (898)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC-------CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 99999997544663778999999998432035788-------88858999788841389999999999728864268961
Q ss_pred HHHHHHH--------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 2211111--------10355633035778876542277654223332233320023333334432102568988753105
Q gi|254780271|r 146 ATTLTEA--------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 146 aT~~TE~--------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
|++|+|+ ||||... ++...+.+++.++.+|++|||||+++. ||+.||+++|
T Consensus 627 mse~~evskligsp~gyvG~e~-------gg~LteavrrrP~sVvLfdeIEkAh~~--------------v~n~llq~lD 685 (898)
T KOG1051 627 MSEFQEVSKLIGSPPGYVGKEE-------GGQLTEAVKRRPYSVVLFEEIEKAHPD--------------VLNILLQLLD 685 (898)
T ss_pred HHHHHHHHHCCCCCCCCCCCHH-------HHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHH
T ss_conf 4555556530489955546305-------778889971699659998302222888--------------9999999986
Q ss_pred CCEEECCCCCCCCCCCCCEEEEECCHHH--HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8701025655643222430243100012--32200046789887641234333211110000000168999641056777
Q gi|254780271|r 218 GTIASVPPQGGRKHPQQEFLQVDTTNIL--FICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV 295 (424)
Q Consensus 218 g~~~~v~~~~grk~~~~~~~~Idt~nil--fi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~ 295 (424)
.+ .+.+..||...+.+.+.|+|+|.- ++..+.. +. ++-. .........-.....-.|..
T Consensus 686 ~G--rltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~--~~------------~~l~---~~~~~~~~~~~~k~~v~~~~ 746 (898)
T KOG1051 686 RG--RLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS--LE------------EKLL---DMDEKRGSYRLKKVQVSDAV 746 (898)
T ss_pred CC--CCCCCCCCEEECCCEEEEEECCCCHHHHHCCCC--CC------------CCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf 27--400588867504645999942631666640454--10------------0012---31000123320133333432
Q ss_pred H----HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 5----220689872078426721110578999987426779999999987449899996899999999551067874236
Q gi|254780271|r 296 K----FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGL 371 (424)
Q Consensus 296 ~----~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~L 371 (424)
+ +-|.|||.||++.++.+++|+.+++.+|+-.+.. .-...++..++.+.+++.+.++++..+|+..+|||++
T Consensus 747 ~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~----e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~i 822 (898)
T KOG1051 747 RIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLT----EIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPI 822 (898)
T ss_pred HCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 013565568678555540554142555666655566778----8887766667999988999766530576847776689
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999996777402
Q gi|254780271|r 372 RSILEKILLDTMFE 385 (424)
Q Consensus 372 rtIiE~iLedimFe 385 (424)
+..+++.+++.+-.
T Consensus 823 kr~i~~~~~~~la~ 836 (898)
T KOG1051 823 KRSIEERFENRLAE 836 (898)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999998877765
No 16
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.95 E-value=1.3e-28 Score=220.92 Aligned_cols=151 Identities=39% Similarity=0.563 Sum_probs=116.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83588407332176999999987185---3131012211111-----------103556330357788765422776542
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDV---PFTMADATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~ 179 (424)
.|+||+||||||||++|++||+.++. ||++.||+.|++. ||||.+-...+.. .+++.++
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~ 76 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY 76 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf 799988989989999999999996798534488557565425699987058998726242650789-------9983898
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHH
Q ss_conf 23332233320023333334432102568988753105870102565564322243024310001232200046789887
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRII 259 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~ 259 (424)
+||++|||||+++ +||+.||+++|++.++. ..| ..||++|++|||+++|.......
T Consensus 77 ~VillDEIeKa~~--------------~V~~~LL~ild~g~~~d--~~g--------~~v~~~n~i~i~Tsn~g~~~~~~ 132 (168)
T pfam07724 77 SIVLIDEIEKAHP--------------GVQNDLLQILEGGTLTD--KQG--------RKVDFRNTLFIMTGNFGSEKISD 132 (168)
T ss_pred CEEEEHHHHHHCH--------------HHHHHHHHHCCCCCEEC--CCC--------CEEECCCEEEEECCCCCCHHHHH
T ss_conf 4898657766589--------------99999998705870636--999--------67844647999768737299998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE
Q ss_conf 641234333211110000000168999641056777522068987207842
Q gi|254780271|r 260 SARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL 310 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii 310 (424)
..+.+. . ......+....++++++|+|||+||||+|
T Consensus 133 ~~~~~~-----~----------~~~~~~~~~~~~~~~~~f~PEflnRid~i 168 (168)
T pfam07724 133 ASRLGK-----S----------PDYELLKELVMDLLKKGFIPEFLGRLPII 168 (168)
T ss_pred HHHCCC-----C----------CCHHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 630467-----8----------54799999999999869884673575839
No 17
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.72 E-value=9.9e-16 Score=130.70 Aligned_cols=268 Identities=20% Similarity=0.290 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 9878999997420308599999999--99986588752121013552256835884073321769999999871853131
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLA--VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavA--vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
..-..-.+.||+--.|-++.|..+- .||+.. ....+ -+=+.|+||.|||||-||+.+|+-|+-+|++
T Consensus 311 ~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~-------~~~~k----g~IlclvGpPGvGKTSl~~sIA~al~r~f~r 379 (784)
T PRK10787 311 KDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-------VNKIK----GPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------CCCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 699999998765430657799999999999986-------24677----8779964699877246999999985898699
Q ss_pred HHHHHHH-HH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0122111-11-------103556330357788765422776542233322333200233333344321025689887531
Q gi|254780271|r 144 ADATTLT-EA-------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKI 215 (424)
Q Consensus 144 vdaT~~T-E~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLki 215 (424)
+-.--.. |+ -|||.=++-||.-|-.+.. .+-++++|||||++... ..|.+ .+||.+
T Consensus 380 islGGv~DeaeirGHrrTYvgampGrii~~l~~a~~------~nPv~llDEiDK~~~~~-----~Gdp~-----salLEv 443 (784)
T PRK10787 380 MALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV------KNPLFLLDEIDKMSSDM-----RGDPA-----SALLEV 443 (784)
T ss_pred EECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC------CCCEEEEHHHHHHCCCC-----CCCHH-----HHHHHH
T ss_conf 806887888882564334344368389999997489------88566500355522455-----89988-----999984
Q ss_pred CCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 05870102565564322243024310001232200046789887641234333211110000000168999641056777
Q gi|254780271|r 216 MEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLV 295 (424)
Q Consensus 216 leg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~ 295 (424)
|+-.+.+ .-..+=-.+.+|-|+++|||+.+-- +
T Consensus 444 LDpeQN~------~F~Dhyl~~~~DlS~v~Fi~TaN~~--~--------------------------------------- 476 (784)
T PRK10787 444 LDPEQNV------AFSDHYLEVDYDLSDVMFVATSNSM--N--------------------------------------- 476 (784)
T ss_pred CCHHHCC------CCCCCEEECCCCHHHEEEEEECCCC--C---------------------------------------
T ss_conf 5976556------4000322046452225899732767--7---------------------------------------
Q ss_pred HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 52206898720784267211105789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r 296 KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375 (424)
Q Consensus 296 ~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi 375 (424)
+.+=|.-|+- +++|..-|.++=..|-. +-|+.+..+--....-.+.|+++|+..|.+ .|.+.-|.|.|.+.+
T Consensus 477 ---ip~pLlDRmE-~i~~~gYt~~eK~~Ia~---~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~-~ytrEaGvR~ler~i 548 (784)
T PRK10787 477 ---IPAPLLDRME-VIRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREI 548 (784)
T ss_pred ---CCHHHHHHEE-EEEECCCCHHHHHHHHH---HHCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCHHHHH
T ss_conf ---8767763121-55411676788999999---745399999828996567439999999875-336544425168899
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCEEEEECCC
Q ss_conf 9996777402767898419998377855878816872565
Q gi|254780271|r 376 EKILLDTMFELPMLKGVSSVIISDDVVKGKACPLNVYTDR 415 (424)
Q Consensus 376 E~iLedimFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~ 415 (424)
.+++..+....-..+..+.+.||.+.+.+=+.|.....+.
T Consensus 549 ~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~lg~~~~~~~~ 588 (784)
T PRK10787 549 SKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGR 588 (784)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECHHHHHHHHCCCCCCHHH
T ss_conf 9999999999970788785588899999982998788124
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=134.61 Aligned_cols=227 Identities=30% Similarity=0.420 Sum_probs=153.9
Q ss_pred CCCCCHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 269987899999------74203085999999999998658875212101355225683588407332176999999987
Q gi|254780271|r 63 EGIPNPQEILRV------LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 63 ~~~~tP~eI~~~------Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~ 136 (424)
..+-+|+++-.. || -||||++||+.-.+-+ .| +..+.. -+ +-.|+|+||-||+|+|||.+||.||.-
T Consensus 102 ~vl~~~~~~~~e~~~~it~d-dViGqEeAK~kcrli~--~y--LenPe~-Fg-~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 102 FVLETPREEDREIISDITLD-DVIGQEEAKRKCRLIM--EY--LENPER-FG-DWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred EEECCCCHHHHHHHCCCCHH-HHHCHHHHHHHHHHHH--HH--HHCHHH-HC-CCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 99617514555661366176-6416398888879999--99--649687-63-457541687789996487999987254
Q ss_pred HCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 18531310122111111035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 137 IDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 137 l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
+++||+-+-||++-. .|||+ -.-.|+.|++.| +++.-+|+|+||+|-|+.+...++...|||- +-|+||..|
T Consensus 175 ~kvp~l~vkat~liG-ehVGd-gar~Ihely~rA----~~~aPcivFiDE~DAiaLdRryQelRGDVsE--iVNALLTel 246 (368)
T COG1223 175 AKVPLLLVKATELIG-EHVGD-GARRIHELYERA----RKAAPCIVFIDELDAIALDRRYQELRGDVSE--IVNALLTEL 246 (368)
T ss_pred CCCCEEEECHHHHHH-HHHHH-HHHHHHHHHHHH----HHCCCEEEEEHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHC
T ss_conf 578548711688888-77435-989999999988----7519849984002455530457886454999--999999850
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 58701025655643222430243100012322000467898876412343332111100000001689996410567775
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVK 296 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~ 296 (424)
+|..-+ ..-..|-.+|- .+++.
T Consensus 247 Dgi~en-----------eGVvtIaaTN~--------------------------------------p~~LD--------- 268 (368)
T COG1223 247 DGIKEN-----------EGVVTIAATNR--------------------------------------PELLD--------- 268 (368)
T ss_pred CCCCCC-----------CCEEEEEECCC--------------------------------------HHHCC---------
T ss_conf 174457-----------75699950598--------------------------------------46507---------
Q ss_pred HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 22068987207842672111057899998742677999999998744989999689999999955106787423689999
Q gi|254780271|r 297 FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILE 376 (424)
Q Consensus 297 ~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE 376 (424)
|-...||-.-++|.--+.++-..|| +.|.+-| -+.+.+. ++++|..+-. +-- |-|.|
T Consensus 269 ----~aiRsRFEeEIEF~LP~~eEr~~il--------e~y~k~~---Plpv~~~---~~~~~~~t~g--~Sg---Rdike 325 (368)
T COG1223 269 ----PAIRSRFEEEIEFKLPNDEERLEIL--------EYYAKKF---PLPVDAD---LRYLAAKTKG--MSG---RDIKE 325 (368)
T ss_pred ----HHHHHHHHHEEEEECCCHHHHHHHH--------HHHHHHC---CCCCCCC---HHHHHHHHCC--CCC---HHHHH
T ss_conf ----8888655650656488858999999--------9989858---9765568---9999998478--772---06899
Q ss_pred HHHHHHHHC
Q ss_conf 996777402
Q gi|254780271|r 377 KILLDTMFE 385 (424)
Q Consensus 377 ~iLedimFe 385 (424)
++|-...-.
T Consensus 326 kvlK~aLh~ 334 (368)
T COG1223 326 KVLKTALHR 334 (368)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 19
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.63 E-value=3.3e-15 Score=127.02 Aligned_cols=245 Identities=24% Similarity=0.340 Sum_probs=171.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHH--HHHH--HHHHHHHCCC--CCCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHHCCCE
Q ss_conf 8999997420308599999999--9998--6588752121--013552-2568358840733217699999998718531
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLA--VAVH--NHYKRLAHSS--KSSNVE-LAKSNILLVGPTGCGKTYLAQTLARIIDVPF 141 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavA--vAv~--nh~rR~~~~~--~~~~~e-i~~~NILliGPTGvGKTelAr~LAk~l~~PF 141 (424)
+.-.+.||+==.|=++-|.-+= +||. =-.||.+.+. ...+-. | +.|+||-|||||=|||.+|+-||-+|
T Consensus 403 ~~A~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkkPkL~~~~~GpqI----lClvGPPGVGKTSlg~SIA~ALnRkF 478 (941)
T TIGR00763 403 KRAKEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKKPKLRGKMKGPQI----LCLVGPPGVGKTSLGKSIAKALNRKF 478 (941)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE----EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99999831678888773034135888989998764036444778888767----87207269542227899999968804
Q ss_pred EEHHHHHH---HHH-----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH
Q ss_conf 31012211---111-----103556330357788765422776542233322333200--23333334432102568988
Q gi|254780271|r 142 TMADATTL---TEA-----GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS--RKSDNPSITRDVSGEGVQQA 211 (424)
Q Consensus 142 ~~vdaT~~---TE~-----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~--~~~~~~~~~~dvs~~gvq~~ 211 (424)
+++=-==+ +|- =|||.=++-||.-|-.+... +=+++||||||++ +. ...|.|+ +
T Consensus 479 vR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~------NPl~LlDEIDK~~~~~~-----~~GDPaS-----A 542 (941)
T TIGR00763 479 VRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK------NPLILLDEIDKIGLKSS-----FRGDPAS-----A 542 (941)
T ss_pred EEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCC------CCEEEEEEEEEECCCCC-----CCCCHHH-----H
T ss_conf 999526722031127864320346725789998760415------88068620220016788-----6556378-----8
Q ss_pred HHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHH--HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7531058701025655643222430243100012--32200046789887641234333211110000000168999641
Q gi|254780271|r 212 LLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNIL--FICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNL 289 (424)
Q Consensus 212 LLkileg~~~~v~~~~grk~~~~~~~~Idt~nil--fi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
||.+||-.+.+ .=..+=-.+.+|-|+++ |||+.+-- +.|
T Consensus 543 LLEvLDPEQN~------~F~DHYldvp~DLS~V~CyFi~TAN~~--d~I------------------------------- 583 (941)
T TIGR00763 543 LLEVLDPEQNN------AFSDHYLDVPFDLSKVLCYFIATANSI--DTI------------------------------- 583 (941)
T ss_pred HHHHCCHHHCC------CCCCCCCCCCCCHHHHHHHEEECCCCC--CCC-------------------------------
T ss_conf 86412864360------425530023400420021000244757--677-------------------------------
Q ss_pred HHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCH
Q ss_conf 05677752206898720784267211105789999874267799999999874498999968999999995510678742
Q gi|254780271|r 290 ESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGAR 369 (424)
Q Consensus 290 ~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR 369 (424)
| +=|.-|- .+++|..=+.++=..|. +.=|+.|..+.=....=+|+|||+||..|.+ .|-+.-|-|
T Consensus 584 ------P----~PLLDRM-EvI~lsGY~~~EK~~IA---~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~-~YtREaGVR 648 (941)
T TIGR00763 584 ------P----RPLLDRM-EVIELSGYTEEEKLEIA---KKYLIPKALEDHGLKPDELKISDEALLLLIK-YYTREAGVR 648 (941)
T ss_pred ------C----CCCCCCE-EEEECCCCCHHHHHHHH---HHCCHHHHHHHHCCCCCCEEECHHHHHHHHH-HHHHHHCCH
T ss_conf ------7----2213740-24523888767899999---8547136798708881322126899999998-751320213
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 368999999677740276
Q gi|254780271|r 370 GLRSILEKILLDTMFELP 387 (424)
Q Consensus 370 ~LrtIiE~iLedimFe~P 387 (424)
-|..-+++++.-+.+.+-
T Consensus 649 NL~r~I~~i~RK~A~~~~ 666 (941)
T TIGR00763 649 NLERQIEKICRKAAVKLV 666 (941)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 389999999999999998
No 20
>CHL00176 ftsH cell division protein; Validated
Probab=99.63 E-value=2.2e-15 Score=128.21 Aligned_cols=132 Identities=30% Similarity=0.425 Sum_probs=100.1
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
Q ss_conf 20308599999999999865887521210--1355225683588407332176999999987185313101221111110
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSK--SSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY 154 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~--~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GY 154 (424)
+-|.|+++||.-+.--|- =++.+.+ ..... .|+-+||.||.|+|||+|||++|--.+|||.-+..+.|.| -|
T Consensus 177 ~DVaG~~eaK~el~Eivd----fLk~P~k~~~~Gak-~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e-~~ 250 (631)
T CHL00176 177 NDVAGVEEAKEELEEVVT----FLKKPERFTAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-MF 250 (631)
T ss_pred CCCCCCHHHHHHHHHHHH----HHCCHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHH-HH
T ss_conf 322885899999999999----83595887644996-8965898898998788999998565588469988378556-42
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 35563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 155 VGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 155 vG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
||-- .+-+|+|.+.|. +...+||||||||-+.++......+..--++...|.||..|+|=
T Consensus 251 vGvg-a~rVR~LF~~Ar----~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf 310 (631)
T CHL00176 251 VGVG-AARVRDLFKKAK----ENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGF 310 (631)
T ss_pred CCHH-HHHHHHHHHHHH----HCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 1555-899999999998----63996999871012011478988898508999999999984288
No 21
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.62 E-value=1.5e-14 Score=122.53 Aligned_cols=213 Identities=25% Similarity=0.337 Sum_probs=135.9
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 26998789999974203085999999999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 63 EGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 63 ~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
..-..|+.+-+ | |||++.+..+.+++..--.|- + ..+++||-||.|||||-|||-+|+.++.+|.
T Consensus 15 ~~~lRP~~l~e----~-vGQehl~~~l~~~i~a~~~~~---------~-~l~h~lf~GPPG~GKTTlAriiAk~~~~~~~ 79 (234)
T pfam05496 15 ERSLRPRRLDE----Y-IGQEKVKENLKIFIEAAKKRG---------E-ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 79 (234)
T ss_pred HHCCCCCCHHH----C-CCHHHHHHHHHHHHHHHHHCC---------C-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 85549897666----0-694999999999999887427---------7-7662788789999888999999984087537
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
...+..+..++ |+..... ...++.++|+|||....+. .|++||..+|.....
T Consensus 80 ~~s~~~i~~~~-----------di~~~l~---~~~~~~ILFIDEIHr~nK~--------------qqd~Llp~vE~g~i~ 131 (234)
T pfam05496 80 ITSGPALEKPG-----------DLAAILT---NLEPGDVLFIDEIHRLNRA--------------VEEILYPAMEDFRLD 131 (234)
T ss_pred EECCHHHHHHH-----------HHHHHHH---HCCCCCEEEEECHHHCCHH--------------HHHHCCCCCCCCEEE
T ss_conf 61426664389-----------9999998---4589988999665435876--------------887445533461699
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 25655643222430243100012322000467898876412343332111100000001689996410567775220689
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPE 302 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPE 302 (424)
+-.. +.+ +...+...+=-|++-||-. . . + -+.+-
T Consensus 132 i~ig---~~~--~A~~~~~e~P~FtLIgATT---------------------e---~-------~----------~l~~p 165 (234)
T pfam05496 132 IVIG---KGP--SARSIRLDLPPFTLVGATT---------------------R---A-------G----------LLTSP 165 (234)
T ss_pred EEEC---CCC--CCEEEECCCCCEEEEEECC---------------------C---C-------C----------CCCHH
T ss_conf 9963---676--6324652689759985215---------------------6---6-------6----------47777
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 872078426721110578999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r 303 FIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 303 l~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|.-||.++..|++|+.+|+.+||. .++ +..| +.++++|++.||+.| +=.||.--+++|+++.
T Consensus 166 l~sR~~i~~~l~~l~~edl~~il~---r~~--------~~l~--i~i~~eal~~IA~~s---~Gd~R~ALnlLe~v~d 227 (234)
T pfam05496 166 LRDRFGIVLRLEFYSVEELEEIVK---RSA--------RILG--VEIDEEGAAEIARRS---RGTPRIANRLLRRVRD 227 (234)
T ss_pred HHHHHHHEEECCCCCHHHHHHHHH---HHH--------HHCC--CCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_conf 997621124424689999999999---999--------9839--995999999999977---9989999899999999
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.61 E-value=1.5e-14 Score=122.49 Aligned_cols=226 Identities=24% Similarity=0.384 Sum_probs=137.4
Q ss_pred HHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57422113899134317999999998987421000000269987899999742030859999999999986588752121
Q gi|254780271|r 25 HEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSS 104 (424)
Q Consensus 25 ~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~ 104 (424)
-+-..|-.|..|.....-..+ ..++..+...... ...-.-+|..-. .-|-|.+++|+.+--||---.++-. ..
T Consensus 86 ~~~~~l~pg~~V~l~~~~~~i-~~~l~~~~d~~v~-~m~v~e~P~v~~----~dIGGl~~~k~el~E~velPl~~pe-~f 158 (390)
T PRK03992 86 VDRDKLKPGARVALNQQTLAI-VEVLPSEKDPRVR-AMEVIESPDVTY----EDIGGLDEQIREVREAVELPLKNPE-LF 158 (390)
T ss_pred CCHHHCCCCCEEEECCCCCEE-EEECCCCCCCCCC-CCCCCCCCCCCH----HHHCCHHHHHHHHHHHHHHHHHCHH-HH
T ss_conf 688887999989985353030-5646888786211-042147999984----6614989999999999999865989-99
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01355225683588407332176999999987185313101221111110355633035778876542277654223332
Q gi|254780271|r 105 KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 105 ~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
...... .|+-|||.||.|||||.|||++|.-+++||+.+.++.+.. .|+|+- +..++++.+.|. ....+|+|+
T Consensus 159 ~~~Gi~-pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~s-k~vGes-ek~vr~lF~~Ar----~~aP~IiFi 231 (390)
T PRK03992 159 EEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ-KFIGEG-ARLVRELFELAR----EKAPSIIFI 231 (390)
T ss_pred HHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH-CCCCHH-HHHHHHHHHHHH----HHCCCEEEH
T ss_conf 976999-9972786898999789999999987488879966799752-454179-999999999999----709908971
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
||+|.++.+........+-.-..+...||..|+|-. ...+...|.++|-.
T Consensus 232 DEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~-----------~~~~V~VIaATNrp------------------- 281 (390)
T PRK03992 232 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD-----------PRGNVKIIAATNRP------------------- 281 (390)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----------CCCCEEEEEECCCC-------------------
T ss_conf 432566335677888620889999999999744877-----------77882799606981-------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHH--HCCCCEEEECCCCHHHHHHHHH
Q ss_conf 4333211110000000168999641056777522068987--2078426721110578999987
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFI--GRLPVLATLEDLDENSLIRILS 326 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~--GRlPiiV~L~~Lt~edl~rILt 326 (424)
+. +=|.|. |||+-++++..-+.+.=..||.
T Consensus 282 -------------------d~-------------LDpAllRpGRFDr~I~iplPd~~~R~~Ilk 313 (390)
T PRK03992 282 -------------------DI-------------LDPALLRPGRFDRIIEVPLPDEEGRLEILK 313 (390)
T ss_pred -------------------HH-------------CCHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf -------------------00-------------597775477652388708949999999999
No 23
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.1e-14 Score=117.31 Aligned_cols=266 Identities=22% Similarity=0.319 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 878999997420308599999999--999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLA--VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavA--vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
--++....||+-=.|=++.|-.+- .||+.+- ....-. =+.|+||.|||||=|++.+|+-++-+|++.
T Consensus 313 Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-------~~~kGp----ILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 313 DLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-------KKLKGP----ILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCC----EEEEECCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 299999874435567116899999999999861-------467885----799978998870118999999958977999
Q ss_pred HHHHHH-HH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 122111-11-------1035563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 145 DATTLT-EA-------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 145 daT~~T-E~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
----.. |+ -|+|.=++-||..+-.+.. .+-++++|||||++.+. ..|.+ -+||.+|
T Consensus 382 sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~------~NPv~LLDEIDKm~ss~-----rGDPa-----SALLEVL 445 (782)
T COG0466 382 SLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEIDKMGSSF-----RGDPA-----SALLEVL 445 (782)
T ss_pred ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCC------CCCEEEEECHHHCCCCC-----CCCHH-----HHHHHHC
T ss_conf 54765427775355312335687289999998677------68747864033316777-----78868-----8888626
Q ss_pred CCCEEECCCCCCCCCCCC-C--EEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 587010256556432224-3--0243100012322000467898876412343332111100000001689996410567
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQ-E--FLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESED 293 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~-~--~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 293 (424)
+-.+.+ .|. + .+.+|-|+++|||+.+.- ..
T Consensus 446 DPEQN~---------~F~DhYLev~yDLS~VmFiaTANsl------------------------~t-------------- 478 (782)
T COG0466 446 DPEQNN---------TFSDHYLEVPYDLSKVMFIATANSL------------------------DT-------------- 478 (782)
T ss_pred CHHHCC---------CHHHCCCCCCCCHHHEEEEEECCCC------------------------CC--------------
T ss_conf 976567---------6122201676644325888603751------------------------32--------------
Q ss_pred HHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 77522068987207842672111057899998742677999999998744989999689999999955106787423689
Q gi|254780271|r 294 LVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 294 L~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
+-+-|.-|.- +.+|..-|+++=..|- ++-|+.+..+--....-+|.|+|+||..|.+ -|.+.-|.|.|.+
T Consensus 479 -----IP~PLlDRME-iI~lsgYt~~EKl~IA---k~~LiPk~~~~~gL~~~el~i~d~ai~~iI~-~YTREAGVR~LeR 548 (782)
T COG0466 479 -----IPAPLLDRME-VIRLSGYTEDEKLEIA---KRHLIPKQLKEHGLKKGELTITDEAIKDIIR-YYTREAGVRNLER 548 (782)
T ss_pred -----CCHHHHCCEE-EEEECCCCHHHHHHHH---HHHCCHHHHHHCCCCCCCEEECHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf -----9867843030-5642688869999999---9844568999759982335565899999999-8767621038999
Q ss_pred HHHHHHHHHHHCCCCCCCCCE-EEECHHHHCCCCCEEEEECCCCH
Q ss_conf 999996777402767898419-99837785587881687256511
Q gi|254780271|r 374 ILEKILLDTMFELPMLKGVSS-VIISDDVVKGKACPLNVYTDRRD 417 (424)
Q Consensus 374 IiE~iLedimFe~P~~~~~~~-v~Id~~~V~~~~~p~~~~~~~~~ 417 (424)
.+.++..-+..+.-..+ .+. +.||.+.+.+=+.+...+.+...
T Consensus 549 ~i~ki~RK~~~~i~~~~-~k~~~~i~~~~l~~yLG~~~f~~~~~~ 592 (782)
T COG0466 549 EIAKICRKAAKKILLKK-EKSIVKIDEKNLKKYLGVPVFRYGKAE 592 (782)
T ss_pred HHHHHHHHHHHHHHHCC-CCCCEEECHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999997257-566244278899997398634753112
No 24
>CHL00181 cbbX CbbX; Provisional
Probab=99.59 E-value=2.2e-13 Score=114.23 Aligned_cols=232 Identities=20% Similarity=0.313 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC---
Q ss_conf 9878999997420308599999999----999865887521210135522568358840733217699999998718---
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLA----VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID--- 138 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavA----vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~--- 138 (424)
.+-.++.++||+-.||-+..|+.|- ..-.|.+|+ .+...... ..-|++|.||.|+|||.+||-+|+++.
T Consensus 12 ~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~-~~Gl~~~~---~s~h~vF~GnPGTGKTTVARl~a~il~~lG 87 (287)
T CHL00181 12 TQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRK-NLGLVSSS---PGLHMSFTGSPGTGKTTVALKMADILYRLG 87 (287)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 34999999998864696999999999999999999999-87999888---765388878998679999999999999869
Q ss_pred ----CCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----5313101221111110355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 139 ----VPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 139 ----~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
..|+.++.+.|- .+|||.-. .+ ....++.|.-|++||||.--+.... ...| .|..+-+.|++
T Consensus 88 ~L~~g~vve~~r~dLv-g~yvG~Ta----~k----t~~~i~~a~GGVLfIDEAY~L~~~~----~~~d-fg~eaidtLl~ 153 (287)
T CHL00181 88 YIKKGHLITVTRDDLV-GQYIGHTA----PK----TKEVLKKAMGGVLFIDEAYYLYKPD----NERD-YGAEAIEILLQ 153 (287)
T ss_pred CCCCCEEEEECHHHHC-CCCCCCCH----HH----HHHHHHHCCCCEEEEECHHHHCCCC----CCCC-CHHHHHHHHHH
T ss_conf 9558958995358841-63535216----99----9999996459879982446535788----9998-37999999999
Q ss_pred HCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10587010256556432224302431000123220004678988764123433321111000000016899964105677
Q gi|254780271|r 215 IMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDL 294 (424)
Q Consensus 215 ileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL 294 (424)
.||... .++.+|+.|=-..++ +++..
T Consensus 154 ~me~~~---------------------~~lvvI~AGY~~eM~---------------------------~fl~~------ 179 (287)
T CHL00181 154 VMENQR---------------------DDLVVIFAGYKDRMD---------------------------KFYES------ 179 (287)
T ss_pred HHHHCC---------------------CCEEEEEECCHHHHH---------------------------HHHHH------
T ss_conf 987079---------------------988999846789999---------------------------99985------
Q ss_pred HHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH----HCCCC-CH
Q ss_conf 75220689872078426721110578999987426779999999987449899996899999999551----06787-42
Q gi|254780271|r 295 VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAI----AHKTG-AR 369 (424)
Q Consensus 295 ~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~----~~niG-AR 369 (424)
-|=|..|||..+.|+..+.++|.+|+. ..++ .. ...++++|...+.+... ..+.| ||
T Consensus 180 -----NpGL~sRf~~~i~F~dYt~~EL~~I~~----~~~~-------~~--~~~l~~~a~~~l~~~~~~~~~~~~FGNaR 241 (287)
T CHL00181 180 -----NPGLSSRVANHVDFPDYTPEELLQIAK----MMLE-------EQ--QYQLTPEAEKVLLDYIKRRMEQPLFANAR 241 (287)
T ss_pred -----CCCHHHHCCCEEECCCCCHHHHHHHHH----HHHH-------HC--CCCCCHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf -----904787688723779859999999999----9999-------86--98258799999999999850899987489
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 368999999677740276
Q gi|254780271|r 370 GLRSILEKILLDTMFELP 387 (424)
Q Consensus 370 ~LrtIiE~iLedimFe~P 387 (424)
-.|.++|+....-+..+-
T Consensus 242 ~vrnl~e~a~~~qa~Rl~ 259 (287)
T CHL00181 242 SVRNAIDRARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998865
No 25
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.59 E-value=8.9e-15 Score=124.04 Aligned_cols=131 Identities=27% Similarity=0.401 Sum_probs=97.5
Q ss_pred HHCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
Q ss_conf 20308599999999999--8658875212101355225683588407332176999999987185313101221111110
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAV--HNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY 154 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv--~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GY 154 (424)
+-|.|+++||.-+.--| -.+-.+.+ ..... .|+-|||.||.|+|||+|||.+|--.++||.-+.++.|.| -|
T Consensus 152 ~DVaG~~eaK~el~EiVdfLk~P~k~~----~~Gak-~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e-~~ 225 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQ----KLGGK-IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MF 225 (644)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHH----HCCCC-CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHH-EE
T ss_conf 040897899999999999812979999----74997-9985177798998778999998645598089978477302-22
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 3556330357788765422776542233322333200233333344321025689887531058
Q gi|254780271|r 155 VGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 155 vG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
||.- .+.+|+|.+.|. +...+||||||||-+.+.......+..-.++...|.||..|+|
T Consensus 226 vGvg-a~rVR~lF~~Ar----~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDG 284 (644)
T PRK10733 226 VGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 284 (644)
T ss_pred EECC-HHHHHHHHHHHH----HCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5306-899999999999----6699799995322036667898889832888789999999548
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=6.3e-14 Score=118.08 Aligned_cols=222 Identities=27% Similarity=0.368 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 987899999742030859999---99999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAK---KVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AK---kavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
..|+.+ |+ ||||++.. +.+.-++ .. + . ..+++|-||.|||||-+|+-||+.++.+|+
T Consensus 7 ~RP~~l----de-~vGQ~hllg~~~~L~~~i----~~--------~-~--~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~ 66 (417)
T PRK13342 7 MRPKTL----DE-VVGQEHLLGPGKPLRRMI----EA--------G-R--LSSMILWGPPGTGKTTLARIIAGATDAEFE 66 (417)
T ss_pred HCCCCH----HH-HCCCHHHHCCCHHHHHHH----HC--------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 499988----88-579877608971999999----76--------9-9--975998896999899999999998689889
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
...||.- | | .-+++.++.+... ....+.|+|+|||...... .|++||..+|.+.+.
T Consensus 67 ~lnA~~~---g-v-----~dir~ii~~a~~~-~~~~~tilfiDEIHRfnK~--------------QQD~LLp~vE~g~ii 122 (417)
T PRK13342 67 ALSAVTS---G-V-----KDLREVIEEAKQS-RLGRRTILFIDEIHRFNKA--------------QQDALLPHVEDGTIT 122 (417)
T ss_pred EEECCCC---C-H-----HHHHHHHHHHHHH-HCCCCEEEEEECHHHCCHH--------------HHHHHHHHHHCCCEE
T ss_conf 9614103---8-8-----9999999998863-1489659999782005889--------------999998751126569
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 25655643222430243100012322000467898876412343332111100000001689996410567775220689
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPE 302 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPE 302 (424)
+ +---|.|=. |-+.|-
T Consensus 123 L-------------IgATTENP~---------------------------------------------------f~in~a 138 (417)
T PRK13342 123 L-------------IGATTENPS---------------------------------------------------FEVNPA 138 (417)
T ss_pred E-------------EEECCCCCH---------------------------------------------------HHCCHH
T ss_conf 9-------------974157922---------------------------------------------------534898
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 87207842672111057899998742677999999998744989999689999999955106787423689999996777
Q gi|254780271|r 303 FIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 303 l~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
|+-|.- +.+|++|+.+|+..||. .++-. . . ..+.++.++++|++.||+.+- =-||.+=+++|-+..
T Consensus 139 LlSRc~-vf~l~~L~~~di~~iL~---ral~~-e-~---~~~~~i~i~~~al~~i~~~s~---GDaR~aLN~LE~a~~-- 204 (417)
T PRK13342 139 LLSRAQ-VFELKPLSEEDLEQLLK---RALED-E-R---GLGRKLELDDEALDALARLAD---GDARRALNLLELAAA-- 204 (417)
T ss_pred HHHHHH-HEECCCCCHHHHHHHHH---HHHHH-H-H---CCCCCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHHH--
T ss_conf 985657-00205899999999999---99987-7-4---337887769999999998149---859999999999985--
Q ss_pred HHCCCCCCCCCEEEECHHHHCCCCCEEEEECCCC
Q ss_conf 4027678984199983778558788168725651
Q gi|254780271|r 383 MFELPMLKGVSSVIISDDVVKGKACPLNVYTDRR 416 (424)
Q Consensus 383 mFe~P~~~~~~~v~Id~~~V~~~~~p~~~~~~~~ 416 (424)
... ....||.+.|+.-..-.....|+.
T Consensus 205 -----~~~--~~~~i~~~~~~~~~~~~~~~yDk~ 231 (417)
T PRK13342 205 -----AAA--GGEVITLELLEEALQRRAARYDKD 231 (417)
T ss_pred -----CCC--CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf -----258--997348999999984410357778
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.53 E-value=5.6e-14 Score=118.41 Aligned_cols=143 Identities=25% Similarity=0.340 Sum_probs=103.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|+-+||+||.|||||.+||.+|...++||+.+|++.++. +|||+. |..++++...|. ....+|+|+|||||..
T Consensus 258 ~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~-~~vGes-E~~~r~~f~~A~----~~aP~ilfiDEidk~~ 331 (491)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG-GIVGES-ESRMRQMIQLAE----TISPCILWIDEIDKAF 331 (491)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH-HHCCHH-HHHHHHHHHHHH----HHCCEEEEEEHHHHHC
T ss_conf 9987999799998789999999866389469966799756-006704-999999999998----6198589974654542
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 23333334432102568988753105870102565564322243024310001232200046789887641234333211
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFS 271 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~ 271 (424)
....+.+ ..++ ...|...||.-|... ...-..|-|.|-
T Consensus 332 ~~~~~~~-d~g~-s~rv~~~~Lt~m~e~-------------~~~VfViattN~--------------------------- 369 (491)
T CHL00195 332 SGLDSKG-DSGT-SNRVLATFITWLSEK-------------KSPVFVVATANN--------------------------- 369 (491)
T ss_pred CCCCCCC-CCCH-HHHHHHHHHHHHCCC-------------CCCEEEEEECCC---------------------------
T ss_conf 5888888-8723-289999999986468-------------997699995899---------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHH--HCCCCEEEECCCCHHHHHHHHH
Q ss_conf 110000000168999641056777522068987--2078426721110578999987
Q gi|254780271|r 272 AVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFI--GRLPVLATLEDLDENSLIRILS 326 (424)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~--GRlPiiV~L~~Lt~edl~rILt 326 (424)
+..+-|||. |||+-+..+..-+.++=..|+.
T Consensus 370 ------------------------~~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ 402 (491)
T CHL00195 370 ------------------------IDSLPLELLRKGRFDEIFFLDLPNLEERELIFK 402 (491)
T ss_pred ------------------------CCCCCHHHCCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf ------------------------755898770898777047648959899999999
No 28
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=1.5e-13 Score=115.35 Aligned_cols=223 Identities=19% Similarity=0.325 Sum_probs=135.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEE--H-HH--
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------3131--0-12--
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTM--A-DA-- 146 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~--v-da-- 146 (424)
|+||++||+|+-+|.-|- .-.|+||.||-|+|||.+||+|+.+|-- ||-- . ++
T Consensus 10 IvGQe~~K~AL~laav~p---------------~~ggvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP---------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HCCCHHHHHHHHHHHCCC---------------CCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHH
T ss_conf 649399999999977278---------------98608997899865999999999728995110367556677421133
Q ss_pred -HHHHHHHHCCCC-----------CCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -211111103556-----------33035778----------87654227765422333223332002333333443210
Q gi|254780271|r 147 -TTLTEAGYVGED-----------VENIILKL----------LQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVS 204 (424)
Q Consensus 147 -T~~TE~GYvG~D-----------vesii~~L----------~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs 204 (424)
...+...++.+. .+.++..+ -....+-+.+|.+||+|+||+--...
T Consensus 75 ~~~~~~~~~~~~~~p~v~lPl~atedr~~G~ldie~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~------------ 142 (334)
T PRK13407 75 WAEVSSTTMVERPTPVIDLPLGATEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------------ 142 (334)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCH------------
T ss_conf 43114555344899876789999986644742188886269877886054340288678720533338------------
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 25689887531058701025655643222430243100012322000467898876412343332111100000001689
Q gi|254780271|r 205 GEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGE 284 (424)
Q Consensus 205 ~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (424)
.+++.||+.++.+.+.+.-.+....--..++.|-|.|=-
T Consensus 143 --~vld~Ll~~~e~G~~~IeReg~s~~~ParF~LVatmNPe--------------------------------------- 181 (334)
T PRK13407 143 --HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPE--------------------------------------- 181 (334)
T ss_pred --HHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCC---------------------------------------
T ss_conf --899999988716957999776346036626589820888---------------------------------------
Q ss_pred HHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCC-HHHHHHHHHH-------H---------HHHHHHH----HHHHHHHC
Q ss_conf 996410567775220689872078426721110-5789999874-------2---------6779999----99998744
Q gi|254780271|r 285 VLRNLESEDLVKFGLIPEFIGRLPVLATLEDLD-ENSLIRILSE-------P---------KNALIKQ----YQCLFDME 343 (424)
Q Consensus 285 ~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt-~edl~rILte-------p---------knsLikQ----y~~Ll~~e 343 (424)
.-.+.|-|.-||...|...... .++=..|+.. | .+..+++ ..+.+
T Consensus 182 -----------Eg~Lrp~lLDRf~l~v~v~~~~~~~~r~eiv~r~~~~~~~~~~~~~~~~~e~~~l~~~i~~Ar~~l--- 247 (334)
T PRK13407 182 -----------EGELRPQLLDRFGLSVEVRSPRDVETRVEVITRRDAYDADHDAFMAKWGAEDMQLRGRILGARAAL--- 247 (334)
T ss_pred -----------CCCCCHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf -----------777598998361006871487887776688999998653879999988989999999999998751---
Q ss_pred CCEEEECHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 98999968999999995510678-742368999999677740
Q gi|254780271|r 344 DVELVFHEDALREIARCAIAHKT-GARGLRSILEKILLDTMF 384 (424)
Q Consensus 344 gV~L~FtdeAi~~IA~~A~~~ni-GAR~LrtIiE~iLedimF 384 (424)
-.+..+++.++.++..+...+. |.|+=+.++.---.-.-+
T Consensus 248 -~~v~~~d~~~~~~~~~~~~~~~~g~Ra~i~l~r~ARa~AaL 288 (334)
T PRK13407 248 -PQLKTPDTVLHDCAALCIALGSDGLRGELTLLRAARAQAAF 288 (334)
T ss_pred -HCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf -14689999999999999985898710999999999999997
No 29
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.51 E-value=4e-13 Score=112.44 Aligned_cols=224 Identities=24% Similarity=0.348 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
-..|+.+-+ | |||++---.=. .+ ||+-. .+ . -++++|-||.|||||-||+-+|+..+.+|+..
T Consensus 21 rmRP~~Lde----~-vGQ~hllg~g~-~L----rr~i~----~~-~--~~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~l 83 (726)
T PRK13341 21 RLRPRTLEE----F-VGQDHILGEGR-LL----RRAIK----AD-R--VGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (726)
T ss_pred HHCCCCHHH----H-CCCHHHCCCCC-HH----HHHHH----CC-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 629998777----3-59575428982-89----99997----69-9--98278889799999999999988748867998
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEC
Q ss_conf 12211111103556330357788765422776-54223332233320023333334432102568988753105870102
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVER-AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASV 223 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~-a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v 223 (424)
.|+.-. | .| +++.++.+...... ..+.|+|+|||-...+. -|+.||..+|.+.+.+
T Consensus 84 sAv~sg----v-kd----lr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~--------------QQD~LLp~vE~G~i~L 140 (726)
T PRK13341 84 NAVLAG----V-KD----LRAEVDAAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVENGTVTL 140 (726)
T ss_pred ECCCCC----H-HH----HHHHHHHHHHHHHHCCCCEEEEEECHHHCCHH--------------HHHHHHHHHCCCEEEE
T ss_conf 562037----7-99----99999999999874599659998625425887--------------8998788860683899
Q ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 56556432224302431000123220004678988764123433321111000000016899964105677752206898
Q gi|254780271|r 224 PPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEF 303 (424)
Q Consensus 224 ~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl 303 (424)
+---|.|=. |-+.|-|
T Consensus 141 -------------IGATTENP~---------------------------------------------------F~vn~AL 156 (726)
T PRK13341 141 -------------IGATTENPY---------------------------------------------------FEVNKAL 156 (726)
T ss_pred -------------EEECCCCCC---------------------------------------------------EEECHHH
T ss_conf -------------970478974---------------------------------------------------3642988
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 72078426721110578999987426779999999987449899996899999999551067874236899999967774
Q gi|254780271|r 304 IGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTM 383 (424)
Q Consensus 304 ~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedim 383 (424)
.-|. .+.+|++|+.+|+.+||. .+|...+..+ -+.++.++++|++.||+.|- =-||.+=+++|-.+.-
T Consensus 157 lSR~-~vf~L~~L~~~dl~~il~---rAl~d~~~g~---~~~~i~i~~~al~~l~~~s~---GDaR~aLN~LElav~~-- 224 (726)
T PRK13341 157 VSRS-RLFRLKSLEDEDLHQLLK---RALQDKERGY---GDRNIDLEPEAEKHLVDVAN---GDARSLLNALELAVES-- 224 (726)
T ss_pred HHHC-EEEEECCCCHHHHHHHHH---HHHHHHHCCC---CCCCCCCCHHHHHHHHHHCC---CCHHHHHHHHHHHHHH--
T ss_conf 8323-466743899999999999---9987674325---66787759899999999759---7399999999999970--
Q ss_pred HCCCCCCCCCEEEECHHHHCCCCC
Q ss_conf 027678984199983778558788
Q gi|254780271|r 384 FELPMLKGVSSVIISDDVVKGKAC 407 (424)
Q Consensus 384 Fe~P~~~~~~~v~Id~~~V~~~~~ 407 (424)
.+...+ ..+.||.+.++....
T Consensus 225 --~~~~~~-~~~~i~~~~~~~~~~ 245 (726)
T PRK13341 225 --TPPDED-GVIHINLAIAEESIQ 245 (726)
T ss_pred --CCCCCC-CCEEECHHHHHHHHH
T ss_conf --745768-834435999999985
No 30
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.46 E-value=3.3e-13 Score=113.05 Aligned_cols=254 Identities=26% Similarity=0.370 Sum_probs=176.7
Q ss_pred CHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH---HH
Q ss_conf 000026998789999974203085999999999998658875212101355225683588407332176999999---98
Q gi|254780271|r 59 TKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL---AR 135 (424)
Q Consensus 59 ~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~L---Ak 135 (424)
.++-.+|+.|+..-+ ||||+.|-||+=--| . --.|-.|||-||-|||||.-||-. ||
T Consensus 142 ~~s~~slLRP~~f~E-----iVGQerAI~aLlaK~-------a--------SPfPQHiiLYGPPGVGKTTaARl~LEe~K 201 (616)
T TIGR02903 142 AKSIQSLLRPRAFSE-----IVGQERAIKALLAKL-------A--------SPFPQHIILYGPPGVGKTTAARLALEEAK 201 (616)
T ss_pred HHHHHHHCCCCCCCC-----CCCHHHHHHHHHHHH-------C--------CCCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999998628766764-----333468999999763-------1--------88866078557338847899999876213
Q ss_pred HH-------CCCEEEHHHHHHH----HH-----H------HCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 71-------8531310122111----11-----1------03556330357788765-----422776542233322333
Q gi|254780271|r 136 II-------DVPFTMADATTLT----EA-----G------YVGEDVENIILKLLQAA-----DYNVERAQRGIVYIDEVD 188 (424)
Q Consensus 136 ~l-------~~PF~~vdaT~~T----E~-----G------YvG~Dvesii~~L~~~a-----~~~v~~a~~~iv~iDEid 188 (424)
-+ ||||+-||-|+|= |+ | |-|.- |||.+.. .+.|-.|.-|++|||||=
T Consensus 202 ~~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa~-----RDLAE~GvPEPk~GLVT~AHGGvLFIDEIG 276 (616)
T TIGR02903 202 KLKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGAR-----RDLAETGVPEPKLGLVTDAHGGVLFIDEIG 276 (616)
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 687447611378575157626677410147767762576556764-----011047879898987100477567650211
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 20023333334432102568988753105870102565564322243024310001232200046789887641234333
Q gi|254780271|r 189 KISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASI 268 (424)
Q Consensus 189 Ki~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~ 268 (424)
.+... .||-|||+||+..+.+..+--. =|=.|+
T Consensus 277 ELD~l--------------LQnKLLKVLEDKrV~F~SsYYD---------pdD~Nv------------------------ 309 (616)
T TIGR02903 277 ELDPL--------------LQNKLLKVLEDKRVEFSSSYYD---------PDDENV------------------------ 309 (616)
T ss_pred HHHHH--------------HHHHHHHHHCCCEEEEEECCCC---------CCCCCC------------------------
T ss_conf 22278--------------7632444322643665321248---------753786------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH--------HHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211110000000168999641056777--------522068987207842672111057899998742677999999998
Q gi|254780271|r 269 GFSAVVKDSDNRPVGEVLRNLESEDLV--------KFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~DL~--------~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll 340 (424)
-.-...+|.++.|.|++ |+..=|-|.-|=-. |.|+|||-+|...|.. -
T Consensus 310 ----------PkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaE-vfFePL~p~dI~~Iv~-------------~ 365 (616)
T TIGR02903 310 ----------PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTPEDIKEIVL-------------N 365 (616)
T ss_pred ----------CHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCE-EECCCCCHHHHHHHHH-------------H
T ss_conf ----------558888522688825687266158824405123301431-3217988789999999-------------9
Q ss_pred HHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCEEEECHHHHC-----CCCCEEEEE
Q ss_conf 7449899996899999999551067874236899999967774027678-98419998377855-----878816872
Q gi|254780271|r 341 DMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPML-KGVSSVIISDDVVK-----GKACPLNVY 412 (424)
Q Consensus 341 ~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~-~~~~~v~Id~~~V~-----~~~~p~~~~ 412 (424)
+.+-+..+..++.-+.||+...+ -|+==.||-.+--=+.|..|.. ..-.+|.|+.+-|. .++.|--..
T Consensus 366 AA~klnv~L~~gV~e~Ia~YTie----GRkAvnILAD~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl~Py~~~ 439 (616)
T TIGR02903 366 AAEKLNVKLAEGVEELIARYTIE----GRKAVNILADVYGYALYKKAEALKEEDKVTITADDVKEVVQISRLSPYEKV 439 (616)
T ss_pred HHHHCCCCCCCCHHHHHHHCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHC
T ss_conf 88861770003648787214713----112223465467676530455567777426618677767753045750112
No 31
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.5e-12 Score=102.83 Aligned_cols=179 Identities=28% Similarity=0.341 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCC
Q ss_conf 308599999999999865887521210-1355225683588407332176999999987185313101221111110355
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSK-SSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~-~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~ 157 (424)
|.|-+++|..+--++-.-.++...... ..+ .++-+||.||.|||||.||+.+|..++.||+.++...|+- .|+|+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~---~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s-k~vGe 319 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLR---PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS-KWVGE 319 (494)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHH-HHHHH
T ss_conf 2363779999999999999708876325898---8836999889997589999998754498248843355540-77659
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEE
Q ss_conf 63303577887654227765422333223332002333333443210256898875310587010256556432224302
Q gi|254780271|r 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFL 237 (424)
Q Consensus 158 Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~ 237 (424)
- |..++.+...|. +..-+|||+||+|++++..... .+.++.-+.+.||..++|-... .+..
T Consensus 320 s-ek~ir~~F~~A~----~~~p~iifiDEiDs~~~~r~~~---~~~~~~rv~~~ll~~~d~~e~~-----------~~v~ 380 (494)
T COG0464 320 S-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDGIEKA-----------EGVL 380 (494)
T ss_pred H-HHHHHHHHHHHH----HCCCCEEEHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHHCCCCC-----------CCEE
T ss_conf 9-999999999999----6699889748866674128998---7637999999999997475443-----------7648
Q ss_pred EEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCC
Q ss_conf 43100012322000467898876412343332111100000001689996410567775220689872078426721110
Q gi|254780271|r 238 QVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLD 317 (424)
Q Consensus 238 ~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt 317 (424)
.|-++|-.... +.+ -++| |||+.++.+.+-+
T Consensus 381 vi~aTN~p~~l----------------------------------d~a------------~lR~---gRfd~~i~v~~pd 411 (494)
T COG0464 381 VIAATNRPDDL----------------------------------DPA------------LLRP---GRFDRLIYVPLPD 411 (494)
T ss_pred EEECCCCCCCC----------------------------------CHH------------HHCC---CCCEEEEEECCCC
T ss_conf 99647983326----------------------------------875------------6243---6630378717989
Q ss_pred HHHHHHHHHHHH
Q ss_conf 578999987426
Q gi|254780271|r 318 ENSLIRILSEPK 329 (424)
Q Consensus 318 ~edl~rILtepk 329 (424)
.+.-.+|+...-
T Consensus 412 ~~~r~~i~~~~~ 423 (494)
T COG0464 412 LEERLEIFKIHL 423 (494)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999985
No 32
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=99.43 E-value=7.6e-14 Score=117.49 Aligned_cols=127 Identities=32% Similarity=0.497 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHH--HHH
Q ss_conf 308599999999999865887521210--1355225683588407332176999999987185313101221111--110
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSK--SSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE--AGY 154 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~--~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE--~GY 154 (424)
|=|+||||.=|--=| +| ++.|.+ .+.-.| ||=+||+||-|+|||+|||+.|=-++|||-.+-=|.|-| ||
T Consensus 61 VAG~dEAKeEl~EiV--dF--LK~P~kf~~LGaKI-PKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMFVG- 134 (505)
T TIGR01241 61 VAGIDEAKEELVEIV--DF--LKNPSKFTKLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG- 134 (505)
T ss_pred CCCCHHHHHHHHHHH--HH--CCCCHHHHHCCCCC-CCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECCCC-
T ss_conf 445323334333134--22--26963798727889-8714731787842467887520258896247407610111205-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHCCC
Q ss_conf 3556330357788765422776542233322333200233333-344321025689887531058
Q gi|254780271|r 155 VGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNP-SITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 155 vG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~-~~~~dvs~~gvq~~LLkileg 218 (424)
|| -|-+|||.+.|. +.--+||||||||-+.+....- ..+..--.|-..|-||-.|||
T Consensus 135 VG---ASRVRDLFeqAK----~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDG 192 (505)
T TIGR01241 135 VG---ASRVRDLFEQAK----KNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDG 192 (505)
T ss_pred CC---CEEHHHHHHHHH----HHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCC
T ss_conf 64---000144579999----71897056401000033356436676541355433233133178
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=1.8e-12 Score=107.89 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=140.5
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 26998789999974203085999999999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 63 EGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 63 ~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
..-+.|+.. ++| |||++.|..+.|++--..+|- + ....+||-||.|.|||.+|+-+|+-++++|-
T Consensus 16 ~~~lRP~~l----~ef-iGQ~~i~~~L~v~i~Aak~r~----e------~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~ 80 (328)
T PRK00080 16 ERSLRPKSL----DEF-IGQEKVKENLKIFIEAAKKRG----E------ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCCCCCH----HHC-CCHHHHHHHHHHHHHHHHHCC----C------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 005598857----663-595999999999999999649----9------9880576588998899999999998688815
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 10122111111035563303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
......+.-+| ||..... .-.+..++|+|||-.+.+. |+..|...||+-.+.
T Consensus 81 ~tsGP~lek~~-----------DL~~iLt---~l~~~dvLFIDEIHRl~~~--------------vEE~LY~AMEDf~iD 132 (328)
T PRK00080 81 ITSGPALEKAG-----------DLAALLT---NLEEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLD 132 (328)
T ss_pred ECCCCCCCCHH-----------HHHHHHH---HCCCCCEEEEHHHHHCCHH--------------HHHHHHHHHHHCEEE
T ss_conf 62450016747-----------8999996---0887876765065324888--------------998857987752345
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-HHH
Q ss_conf 2565564322243024310001232200046789887641234333211110000000168999641056777522-068
Q gi|254780271|r 223 VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFG-LIP 301 (424)
Q Consensus 223 v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~g-liP 301 (424)
+....| +....+.++-.. |..-||- . ..| +..
T Consensus 133 i~iG~g---~~Ar~~~i~L~p--FTLIGAT---------------------T---------------------r~g~Ls~ 165 (328)
T PRK00080 133 IMIGKG---PAARSIRLDLPP--FTLIGAT---------------------T---------------------RAGLLTS 165 (328)
T ss_pred EEECCC---CCCEEEECCCCC--EEEEECC---------------------C---------------------CCCCCCH
T ss_conf 786478---653245558998--3474013---------------------6---------------------7665776
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 98720784267211105789999874267799999999874498999968999999995510-678742368999
Q gi|254780271|r 302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRSIL 375 (424)
Q Consensus 302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~LrtIi 375 (424)
=|..||.++..|+.-+.++|.+|+.. ...+| .+.++++|..+||+.+-- +.+--|-||+|.
T Consensus 166 PLrdRFGi~~~l~~Y~~eeL~~Ii~r--------sa~~l-----~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvr 227 (328)
T PRK00080 166 PLRDRFGIVQRLEFYTVEELEKIVKR--------SARIL-----GIEIDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHH--------HHHHH-----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78975793366345899999999999--------99983-----9887899999999863898399999999999
No 34
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=99.41 E-value=3.4e-13 Score=112.98 Aligned_cols=184 Identities=26% Similarity=0.394 Sum_probs=114.2
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHH-HCC
Q ss_conf 0308599999999999865887521210135522568358840733217699999998718531310122111111-035
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG-YVG 156 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~G-YvG 156 (424)
-|+||+.||||+.||. ....|+||+||.|||||.+||+|+.+|- |....++-+.|... ..|
T Consensus 4 di~GQ~~akrAl~iAa-----------------aG~H~lLl~GpPG~GKTmlA~rl~~iLP-~l~~~e~le~~~i~S~~g 65 (207)
T pfam01078 4 DVKGQEQAKRALEIAA-----------------AGGHNLLMIGPPGSGKTMLAKRLPGILP-PLTEQEALEVTAIHSVAG 65 (207)
T ss_pred HHCCCHHHHHHHHHHH-----------------CCCCCEEEECCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCC
T ss_conf 8638599999999985-----------------4787589788998029999976301489-987899887776423036
Q ss_pred CCCCC-HHH--------------HHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 56330-357--------------788----76542277654223332233320023333334432102568988753105
Q gi|254780271|r 157 EDVEN-IIL--------------KLL----QAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 157 ~Dves-ii~--------------~L~----~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
...+. .+. .|+ ....+.+-.|.+||+|+||+-...+. +++.|++.||
T Consensus 66 ~~~~~~l~~~rPfr~PHhs~s~~aliGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~--------------vle~LrqpLE 131 (207)
T pfam01078 66 LGGDGGLIRRRPFRAPHHSASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRR--------------VLESLRQPLE 131 (207)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCEEEECCHHHCCHH--------------HHHHHHHHHC
T ss_conf 87777744579865788764363322688889997066636878884764653988--------------9999987660
Q ss_pred CCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87010256556432224302431000123220004678988764123433321111000000016899964105677752
Q gi|254780271|r 218 GTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKF 297 (424)
Q Consensus 218 g~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~ 297 (424)
...+++.-.++.-.--.++..|-+.|-- -|| .+ +-......-...........
T Consensus 132 ~~~v~IsRa~~~~~~PA~f~LvaA~NPC-pCG-~~----------------~~~~~~C~C~~~~~~~Y~~r--------- 184 (207)
T pfam01078 132 DGEITISRARAKVTFPARFQLVAAMNPC-PCG-YL----------------GDPDKRCRCTPRQIRRYLSR--------- 184 (207)
T ss_pred CCCEEEEECCCEEEECCCEEEEEECCCC-CCC-CC----------------CCCCCCCCCCHHHHHHHHHH---------
T ss_conf 4948999567589860434888850577-778-78----------------89999757889999999876---------
Q ss_pred CHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 206898720784267211105789
Q gi|254780271|r 298 GLIPEFIGRLPVLATLEDLDENSL 321 (424)
Q Consensus 298 gliPEl~GRlPiiV~L~~Lt~edl 321 (424)
+--=|.-||++.|++.+++.++|
T Consensus 185 -lSgPllDRiDl~v~~~~~~~~~l 207 (207)
T pfam01078 185 -LSGPLLDRIDLQVEVPRLSAEEL 207 (207)
T ss_pred -CCHHHHCCEEEEEECCCCCHHHC
T ss_conf -45220206878997789995769
No 35
>KOG0731 consensus
Probab=99.40 E-value=9.3e-13 Score=109.90 Aligned_cols=131 Identities=31% Similarity=0.428 Sum_probs=99.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHC
Q ss_conf 0308599999999999865887521210--13552256835884073321769999999871853131012211111103
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSK--SSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV 155 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~--~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYv 155 (424)
-|-|+++||.=+=--| +=++++.. .+..- .|+-+||.||-|||||+|||++|--.+|||+-+.++.|.| .||
T Consensus 312 DVAG~deAK~El~E~V----~fLKNP~~Y~~lGAK-iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE-~~~ 385 (774)
T KOG0731 312 DVAGVDEAKEELMEFV----KFLKNPEQYQELGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE-MFV 385 (774)
T ss_pred CCCCHHHHHHHHHHHH----HHHCCHHHHHHCCCC-CCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHH-HHC
T ss_conf 0267089999999999----984398999874776-7675178789998678999988530589646413378888-760
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 55633035778876542277654223332233320023333-33443210256898875310587
Q gi|254780271|r 156 GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDN-PSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 156 G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~-~~~~~dvs~~gvq~~LLkileg~ 219 (424)
|-- .+-+++|...+. .....|||+||||-++..... ...+..-..|-..|.||-.|+|-
T Consensus 386 g~~-asrvr~lf~~ar----~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731 386 GVG-ASRVRDLFPLAR----KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred CCC-HHHHHHHHHHHH----CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 343-488899998743----269807971454200312556666788807888999887875277
No 36
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.38 E-value=5.7e-13 Score=111.38 Aligned_cols=147 Identities=27% Similarity=0.362 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 98789999974203085999999999998658875212101355225683588407332176999999987185313101
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
.....+...+.++++|+++++..+-+|+. ...++|+.||+|||||.+|+++|+.++.||.++-
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~-----------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALL-----------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHH-----------------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 66666665225655266999999999998-----------------5997787798987779999999998389818995
Q ss_pred HHHHHH-HHHCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 221111-11035563303577---88765422776542233322333200233333344321025689887531058701
Q gi|254780271|r 146 ATTLTE-AGYVGEDVENIILK---LLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIA 221 (424)
Q Consensus 146 aT~~TE-~GYvG~Dvesii~~---L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~ 221 (424)
+|..+. .--+|..+-..... -...-.+.+-.+..+++++|||+++.+. +|++||..|+...+
T Consensus 76 ~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~--------------~q~aLl~~l~e~~v 141 (329)
T COG0714 76 CTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE--------------VQNALLEALEERQV 141 (329)
T ss_pred CCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHH--------------HHHHHHHHHHHCEE
T ss_conf 6899888882056888766425771898468733451338998703458988--------------99999999972689
Q ss_pred ECCCCCCCCCCCCCEEEEECCHH
Q ss_conf 02565564322243024310001
Q gi|254780271|r 222 SVPPQGGRKHPQQEFLQVDTTNI 244 (424)
Q Consensus 222 ~v~~~~grk~~~~~~~~Idt~ni 244 (424)
+++...+ ......++.|.|+|-
T Consensus 142 t~~~~~~-~~~~~~f~viaT~Np 163 (329)
T COG0714 142 TVPGLTT-IRLPPPFIVIATQNP 163 (329)
T ss_pred EECCCCC-CCCCCCCEEEEECCC
T ss_conf 7079665-337998789982686
No 37
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.8e-12 Score=106.57 Aligned_cols=295 Identities=25% Similarity=0.377 Sum_probs=173.5
Q ss_pred CCCEEEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHH----HH-HHCCCHHHH
Q ss_conf 7672561689888657422113899134317999999998987421000000269987899999----74-203085999
Q gi|254780271|r 11 SKNALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRV----LD-EYVIGQGQA 85 (424)
Q Consensus 11 ~~~~~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~----Ld-~yVIGQ~~A 85 (424)
+...+.|.+=.-.+ -.+|.|..+|.+..-.+.|..+-- . .....+.|.++..+ +| +-|+||+.|
T Consensus 119 ~~~~~i~p~~n~~E---asli~~~~v~~~~~l~ev~~~l~g-~-------~~l~~~~~~~~~~~~~~~~D~~DV~GQ~~A 187 (490)
T COG0606 119 GKRGLIVPKENAEE---ASLIGGLPVYGARYLEEVVNFLEG-K-------LRLPIPIPSEVIESFSLAPDFKDVKGQEQA 187 (490)
T ss_pred CCCCEECCHHCCCC---CCCCCCCCCCCHHHHHHHHHHHCC-C-------CCCCCCCCCCCCCCCCCCCCHHHHCCCHHH
T ss_conf 57827724111440---344588872533029999998648-8-------677877864211344457666664384999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH-HHCCCCCCC---
Q ss_conf 9999999986588752121013552256835884073321769999999871853131012211111-103556330---
Q gi|254780271|r 86 KKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA-GYVGEDVEN--- 161 (424)
Q Consensus 86 KkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~-GYvG~Dves--- 161 (424)
||++-||. - .-.|+||+||-|+|||.||+||..+| -|...-++-.++-. -|.|.+-+.
T Consensus 188 KrAleiAA----A-------------GgHnLl~~GpPGtGKTmla~Rl~~lL-Ppls~~E~lE~s~I~s~~~~~~~~~~~ 249 (490)
T COG0606 188 KRALEIAA----A-------------GGHNLLLVGPPGTGKTMLASRLPGLL-PPLSIPEALEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred HHHHHHHH----H-------------CCCCEEEECCCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999998----4-------------38867875699886567642310259-998708889998887635432467864
Q ss_pred HHHH-------------HH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 3577-------------88----765422776542233322333200233333344321025689887531058701025
Q gi|254780271|r 162 IILK-------------LL----QAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224 (424)
Q Consensus 162 ii~~-------------L~----~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~ 224 (424)
..++ |+ ....+.+-.|.+|+.|+||.-...+ .+.+.|-+-||.+.+.+.
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~--------------~iLe~LR~PLE~g~i~Is 315 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKR--------------SILEALREPLENGKIIIS 315 (490)
T ss_pred CEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCEEEEECCCHHHH--------------HHHHHHHCCCCCCCEEEE
T ss_conf 110787688740228897378998898735430387788614421059--------------999997374125817999
Q ss_pred CCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 6556432224302431000123220004678988764123433321111000--00001689996410567775220689
Q gi|254780271|r 225 PQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKD--SDNRPVGEVLRNLESEDLVKFGLIPE 302 (424)
Q Consensus 225 ~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~DL~~~gliPE 302 (424)
-.+.+-.-..++..|-..|- -.||-. ++.... ............ +--=
T Consensus 316 Ra~~~v~ypa~Fqlv~AmNp-cpcG~~-------------------~~~~~~C~c~~~~~~~Y~~k----------lSgp 365 (490)
T COG0606 316 RAGSKVTYPARFQLVAAMNP-CPCGNL-------------------GAPLRRCPCSPRQIKRYLNK----------LSGP 365 (490)
T ss_pred ECCCEEEEEEEEEEHHHCCC-CCCCCC-------------------CCCCCCCCCCHHHHHHHHHH----------HHHH
T ss_conf 75871687212677522399-976478-------------------88777757887887788987----------4378
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHH-HH------------HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH------
Q ss_conf 872078426721110578999987426-77------------99999999874498999968999999995510------
Q gi|254780271|r 303 FIGRLPVLATLEDLDENSLIRILSEPK-NA------------LIKQYQCLFDMEDVELVFHEDALREIARCAIA------ 363 (424)
Q Consensus 303 l~GRlPiiV~L~~Lt~edl~rILtepk-ns------------LikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~------ 363 (424)
|.-||+.+|+-..|+..++.+-...++ .+ -+.||..+ +++.+.+..+|+..+....+
T Consensus 366 ~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~----~~Na~l~~~~l~k~~~L~~~~~~~L~ 441 (490)
T COG0606 366 FLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRI----GINAELSEEALRKFCALQREDADLLK 441 (490)
T ss_pred HHHHHHHEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC----CCCHHCCHHHHHHHCCCCHHHHHHHH
T ss_conf 77552411004678978761478989875889999999999999985356----85421289999976265776799999
Q ss_pred -----CCCCCHHHHHHH--HHHHHHH
Q ss_conf -----678742368999--9996777
Q gi|254780271|r 364 -----HKTGARGLRSIL--EKILLDT 382 (424)
Q Consensus 364 -----~niGAR~LrtIi--E~iLedi 382 (424)
-++-+|..++|+ -+.+.|+
T Consensus 442 ~al~~~~lS~R~~~rILKvarTiADL 467 (490)
T COG0606 442 AALERLGLSARAYHRILKVARTIADL 467 (490)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99996620599899899887656512
No 38
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.34 E-value=1e-11 Score=102.55 Aligned_cols=118 Identities=24% Similarity=0.346 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----E
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853-----1
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-----F 141 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-----F 141 (424)
.|+.+-+ ||||+++++.+.-++.+ + . ..|+||-||.|||||-+|+.||+.+..+ +
T Consensus 10 RP~~~~d-----vvGq~~i~~~L~~~~~~------------~-~--~phlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~ 69 (337)
T PRK12402 10 RPSLFED-----ILGQESVVDHLSALAAS------------G-N--LPHLVVYGPSGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CCCCHHH-----HCCCHHHHHHHHHHHHC------------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8897998-----03979999999999977------------9-9--8769888929848999999999996799756783
Q ss_pred EEHHHHHHHHHHH------------------CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3101221111110------------------35563303577887-6542277654223332233320023333334432
Q gi|254780271|r 142 TMADATTLTEAGY------------------VGEDVENIILKLLQ-AADYNVERAQRGIVYIDEVDKISRKSDNPSITRD 202 (424)
Q Consensus 142 ~~vdaT~~TE~GY------------------vG~Dvesii~~L~~-~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~d 202 (424)
.-..|+.+.+.|- .|..+-..++..+. .+...--...+.++.+||.|.++.
T Consensus 70 ~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~---------- 139 (337)
T PRK12402 70 TYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALRE---------- 139 (337)
T ss_pred CEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCH----------
T ss_conf 3311653113564001016642344201533277378999999999861488778804999707131799----------
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 1025689887531058
Q gi|254780271|r 203 VSGEGVQQALLKIMEG 218 (424)
Q Consensus 203 vs~~gvq~~LLkileg 218 (424)
+.|++|++++|.
T Consensus 140 ----~Aq~aLlk~lEe 151 (337)
T PRK12402 140 ----DAQQALRRIMER 151 (337)
T ss_pred ----HHHHHHHHHHHC
T ss_conf ----999999988740
No 39
>KOG2004 consensus
Probab=99.33 E-value=1.5e-11 Score=101.42 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=120.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH--------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835884073321769999999871853131012211111--------103556330357788765422776542233322
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA--------GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~--------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
+=+-|.||.|||||-|||.+|+-||--|.++-.--+|-+ -|||.=++-||.-|=.. +.++-+++||
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v------~t~NPliLiD 512 (906)
T KOG2004 439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV------KTENPLILID 512 (906)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEECCCCHHHHHHHHHH------CCCCCEEEEE
T ss_conf 3799868998773218999999848746998536634277642542110014884899999861------7788658853
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
||||+.+. ...|.+ -+||.+|+-.+ ...-..+--.+.+|-|.+||||+.+-- +.|
T Consensus 513 EvDKlG~g-----~qGDPa-----sALLElLDPEQ------NanFlDHYLdVp~DLSkVLFicTAN~i--dtI------- 567 (906)
T KOG2004 513 EVDKLGSG-----HQGDPA-----SALLELLDPEQ------NANFLDHYLDVPVDLSKVLFICTANVI--DTI------- 567 (906)
T ss_pred HHHHHCCC-----CCCCHH-----HHHHHHCCHHH------CCCHHHHCCCCCCCHHHEEEEEECCCC--CCC-------
T ss_conf 22341788-----779868-----99987439653------553454202664211106889853644--569-------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 33321111000000016899964105677752206898720784267211105789999874267799999999874498
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDV 345 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV 345 (424)
| |-|.-|.-+ +++..-..++=++|- ++-|+.|..+.-....=
T Consensus 568 ------------------------------P----~pLlDRMEv-IelsGYv~eEKv~IA---~~yLip~a~~~~gl~~e 609 (906)
T KOG2004 568 ------------------------------P----PPLLDRMEV-IELSGYVAEEKVKIA---ERYLIPQALKDCGLKPE 609 (906)
T ss_pred ------------------------------C----HHHHHHHHE-EECCCCCHHHHHHHH---HHHHHHHHHHHCCCCHH
T ss_conf ------------------------------8----566412232-203672279899999---98412578987499878
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99996899999999551067874236899999967774027
Q gi|254780271|r 346 ELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFEL 386 (424)
Q Consensus 346 ~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~ 386 (424)
.+..+++|+..|.+ -|-+.-|.|-|..-+|++...+.|.+
T Consensus 610 ~v~is~~al~~lI~-~YcrEaGVRnLqk~iekI~Rk~Al~v 649 (906)
T KOG2004 610 QVKISDDALLALIE-RYCREAGVRNLQKQIEKICRKVALKV 649 (906)
T ss_pred HCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65862999999999-99888767789999999999999999
No 40
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.26 E-value=1.3e-10 Score=94.81 Aligned_cols=300 Identities=16% Similarity=0.209 Sum_probs=158.3
Q ss_pred CEEEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 72561689888657422113899134317999999998987421000000269987899999742030859999999999
Q gi|254780271|r 13 NALYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVA 92 (424)
Q Consensus 13 ~~~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvA 92 (424)
+.+.|+.....+ -.+|.|..+|-.+.=-+++. ++..+..... ........|.....+- -|.||+.|||++-||
T Consensus 134 ~~~ivp~~n~~e---a~~v~~~~v~~~~~L~e~~~-~l~g~~~~~~-~~~~~~~~~~~~~D~~--dv~Gq~~akraleIA 206 (506)
T PRK09862 134 RKIIVAKDNEDE---VGLINGEGCLIADHLQAVCA-FLEGKHALER-PKPTDAVSRALQHDLS--DVVGQEQGKRGLEIT 206 (506)
T ss_pred CEEEECCCCHHH---HCCCCCCCEECCCCHHHHHH-HHCCCCCCCC-CCCCCCCCCCCCCCHH--HHCCCHHHHHHHHHH
T ss_conf 989953464566---50569982870325999999-8659876788-8866556876656756--536979999999997
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH---HHHHHHH-HHHCCCCC--C------
Q ss_conf 9865887521210135522568358840733217699999998718531310---1221111-11035563--3------
Q gi|254780271|r 93 VHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA---DATTLTE-AGYVGEDV--E------ 160 (424)
Q Consensus 93 v~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v---daT~~TE-~GYvG~Dv--e------ 160 (424)
. -.-.|+||+||.|+|||.||+||.-+|- |...- |.|+.-. +|..+... .
T Consensus 207 A-----------------AGgHnlLl~GpPG~GKTMlA~rlp~ILP-pLt~~e~lEv~~I~Svag~~~~~~~~~~rPfR~ 268 (506)
T PRK09862 207 A-----------------AGGHNLLLIGPPGTGKTMLASRINGLLP-DLSNEEALESAAILSLVNAESVQKQWRQRPFRS 268 (506)
T ss_pred H-----------------CCCCCEEEECCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEC
T ss_conf 4-----------------4688659876999459899977512389-989899999999998718987777546685037
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf --------035778876542277654223332233320023333334432102568988753105870102565564322
Q gi|254780271|r 161 --------NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP 232 (424)
Q Consensus 161 --------sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~ 232 (424)
+++..-.....+.+-.|.+|++|+||.-.-.+ .|.+.|-+-||.+.+++.-.++.-.-
T Consensus 269 PHHs~S~~aliGGG~~~~PGEISLAH~GVLFLDElpEF~r--------------~vLe~LRqPLE~g~I~IsRa~~~~~~ 334 (506)
T PRK09862 269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER--------------RTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred CCCCCCHHHHHCCCCCCCCCCEEECCCCEEEECCHHCCCH--------------HHHHHHHHHHCCCEEEEEECCCEEEE
T ss_conf 8876547666379999999722213575788455000688--------------89998776224775999966867986
Q ss_pred CCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEE
Q ss_conf 24302431000123220004678988764123433321111000000016899964105677752206898720784267
Q gi|254780271|r 233 QQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLAT 312 (424)
Q Consensus 233 ~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~ 312 (424)
--++..|-+.|- --|| .|. .....-........... +-==|.-||++.|+
T Consensus 335 PA~F~LVaAmNP-CPCG-~~~------------------~~~~~Ct~~~~~rY~~r----------lSGPllDRiDl~v~ 384 (506)
T PRK09862 335 PARFQLVAAMNP-SPTG-HYQ------------------GNHNRCTPEQTLRYLNR----------LSGPFLDRFDLSLE 384 (506)
T ss_pred CCHHHHEHHCCC-CCCC-CCC------------------CCCCCCCHHHHHHHHHH----------CCHHHHHCEEEEEE
T ss_conf 153311110378-8888-899------------------99777898999999865----------66221303647998
Q ss_pred ECCCCHHHHHHHHH--H--------HHHHHHHHHHHHHHHCCC---------EEEECHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 21110578999987--4--------267799999999874498---------9999689999999955106787423689
Q gi|254780271|r 313 LEDLDENSLIRILS--E--------PKNALIKQYQCLFDMEDV---------ELVFHEDALREIARCAIAHKTGARGLRS 373 (424)
Q Consensus 313 L~~Lt~edl~rILt--e--------pknsLikQy~~Ll~~egV---------~L~FtdeAi~~IA~~A~~~niGAR~Lrt 373 (424)
+...+.+++..=-. | -..+--.|+... ..-|- -..+++++.+.+-+..-..++-+|+.+.
T Consensus 385 v~~~~~~~l~~~~~~~esS~~ir~rV~~Ar~~q~~R~-~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~r 463 (506)
T PRK09862 385 IPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQ-NKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQR 463 (506)
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 1689966663248989888999999999999999855-165657998999765499978999999999965957999999
Q ss_pred HH--HHHHHHH
Q ss_conf 99--9996777
Q gi|254780271|r 374 IL--EKILLDT 382 (424)
Q Consensus 374 Ii--E~iLedi 382 (424)
|+ -+.+.|+
T Consensus 464 iLrvARTIADL 474 (506)
T PRK09862 464 LLKVARTIADI 474 (506)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999855
No 41
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1e-10 Score=95.55 Aligned_cols=111 Identities=31% Similarity=0.453 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE-------EHHH-HHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185313-------1012-2111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT-------MADA-TTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~-------~vda-T~~T 150 (424)
||||+++++.+.-|+.+. | .+.-.||.||.|||||-+||.+|+.++-+-- .++. -.++
T Consensus 17 vvGQe~i~~~L~nal~~~--r------------i~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~C~~i~ 82 (557)
T PRK07270 17 MVGQEVVATTLKQAVESG--K------------ISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDICRDIT 82 (557)
T ss_pred HCCHHHHHHHHHHHHHCC--C------------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 148199999999999859--9------------54044210899868999999999995799989999888777999987
Q ss_pred HHHHC---------C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5-563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------G-EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G-~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|.+ . ..|+ .||++.+...+.--...+.|+.|||.+.+.. +.+|+|||.||..
T Consensus 83 -~g~~~DviEidaas~~gVd-~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~--------------~A~NALLKtLEEP 145 (557)
T PRK07270 83 -NGSLEDVIEIDAASNNGVD-EIRDIRDKSTYAPSRATYKVYIIDEVHMLST--------------GAFNALLKTLEEP 145 (557)
T ss_pred -CCCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCCCCEEEEEECCHHHCCH--------------HHHHHHHHHHHCC
T ss_conf -5899974873477767889-9999999842387778838999714453499--------------9999899985289
No 42
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.9e-11 Score=99.39 Aligned_cols=97 Identities=30% Similarity=0.559 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.||-+||-||.|+|||+|||+.|.-.++-|++|-.+.|-+ -|+|+- -.++|++.+.| +...-+|||+||||-|+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGEG-aRlVRelF~lA----rekaPsIIFiDEIDAIg 257 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGEG-ARLVRELFELA----REKAPSIIFIDEIDAIG 257 (406)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH-HHHCCC-HHHHHHHHHHH----HHCCCEEEEEECHHHHH
T ss_conf 9971276689997588999998720586699942199999-983411-69999999987----41498499983112231
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.+....+.+ +...||..||++|.
T Consensus 258 ~kR~d~~t~---gDrEVQRTmleLL~ 280 (406)
T COG1222 258 AKRFDSGTS---GDREVQRTMLELLN 280 (406)
T ss_pred CCCCCCCCC---CHHHHHHHHHHHHH
T ss_conf 111368888---50999999999998
No 43
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=99.25 E-value=1.5e-11 Score=101.52 Aligned_cols=156 Identities=28% Similarity=0.421 Sum_probs=103.3
Q ss_pred CCCCCCCCEECHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHH---HHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2113899134317999999998987421000000269987899---99974-2030859999999999986588752121
Q gi|254780271|r 29 KLIAGPTVFICDECVELCMDIIREENKSSITKSHEGIPNPQEI---LRVLD-EYVIGQGQAKKVLAVAVHNHYKRLAHSS 104 (424)
Q Consensus 29 ~li~g~~~~iC~~Ci~~~~~i~~~e~~~~~~~~~~~~~tP~eI---~~~Ld-~yVIGQ~~AKkavAvAv~nh~rR~~~~~ 104 (424)
.||.|.++|+.+.--+.| +++++-.+..-+.....-+.|..= .-.|| +-|+||++||||+-||. -+
T Consensus 143 Slv~G~~~y~~~~L~~vv-~fl~ql~~~~L~~~t~~~~~~~~~~s~~~~~DL~dv~GQ~~akRAleIAa----AG----- 212 (505)
T TIGR00368 143 SLVDGLNVYGADHLKEVV-KFLEQLGSEKLPPRTNTKAKSIINVSLIIDLDLKDVKGQQHAKRALEIAA----AG----- 212 (505)
T ss_pred EEECCCCEEHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHH----HC-----
T ss_conf 266387402047489999-99976231017775455531034413201044322545101102677753----13-----
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH--------------
Q ss_conf 013552256835884073321769999999871853131012211111103556330357788765--------------
Q gi|254780271|r 105 KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA-------------- 170 (424)
Q Consensus 105 ~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a-------------- 170 (424)
-.|+||+||-|+|||.+|+||.-+|- |+.--||=+-. .|-|+...|.+..
T Consensus 213 --------GHNlll~GPPGsGKTmla~r~~giLP-~L~~~EalE~~-------~v~S~~~~l~~~~~~~rQRPFR~PHHs 276 (505)
T TIGR00368 213 --------GHNLLLLGPPGSGKTMLASRLQGILP-PLTNEEALETA-------RVLSLVGKLIDRKQWKRQRPFRSPHHS 276 (505)
T ss_pred --------CCCEEEECCCCCCHHHHHHHHHCCCC-CCCCHHHHHHH-------HHHHHHHHHHHCCCHHCCCCCCCCCCC
T ss_conf --------56437678249626899987510578-64512666678-------888888757652301106867786500
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf --------------422776542233322333200233333344321025689887531058701025
Q gi|254780271|r 171 --------------DYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224 (424)
Q Consensus 171 --------------~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~ 224 (424)
.+-|--|.+||+|+||.-.--+. |.++|-+-+|.+.+.+.
T Consensus 277 AS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~EF~r~--------------vL~~LR~PlEdg~i~iS 330 (505)
T TIGR00368 277 ASKPALVGGGSIPKPGEISLAHNGVLFLDELPEFKRK--------------VLDALREPLEDGSISIS 330 (505)
T ss_pred CCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHHHHHH--------------HHHHHCCCCCCCCEEEE
T ss_conf 2566640587522285120200541043222044678--------------99871787426706886
No 44
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=2.9e-10 Score=92.41 Aligned_cols=217 Identities=22% Similarity=0.324 Sum_probs=128.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEEECCCCCHHHHHHHHHHHH-------CCCEEEH----
Q ss_conf 030859999999999986588752121013552256--835884073321769999999871-------8531310----
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAK--SNILLVGPTGCGKTYLAQTLARII-------DVPFTMA---- 144 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~--~NILliGPTGvGKTelAr~LAk~l-------~~PF~~v---- 144 (424)
.||||+++|+++-+++ |.| ..+|+.||-|+|||.++|.||.+| +.||-..
T Consensus 13 aIvGQe~~k~aLll~a-----------------v~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~~~p~~p 75 (347)
T CHL00081 13 AIVGQEEMKLALLLNV-----------------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFNSDPRDP 75 (347)
T ss_pred HHCCHHHHHHHHHHHH-----------------CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 6538499999999982-----------------57887869987899874999999999857874220688767898981
Q ss_pred -HHHH-H--------------------------HHHHHCCC-CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -1221-1--------------------------11110355-6330357788-765422776542233322333200233
Q gi|254780271|r 145 -DATT-L--------------------------TEAGYVGE-DVENIILKLL-QAADYNVERAQRGIVYIDEVDKISRKS 194 (424)
Q Consensus 145 -daT~-~--------------------------TE~GYvG~-Dvesii~~L~-~~a~~~v~~a~~~iv~iDEidKi~~~~ 194 (424)
.+.. . ||-.-+|. |++.-+..-. ....+-..+|.+|++|+|||--...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDie~al~~G~~~f~pGlLa~A~rGiLyvDEINll~d-- 153 (347)
T CHL00081 76 DLMSDEVRERIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD-- 153 (347)
T ss_pred CCCCHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEHHHHHHH--
T ss_conf 002426665431466675211468625368888523011400099898458711565312220388588614543237--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 33334432102568988753105870102565564322243024310001232200046789887641234333211110
Q gi|254780271|r 195 DNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVV 274 (424)
Q Consensus 195 ~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~ 274 (424)
.+++.||..++.+...+.-.|-....-..++.|-|.|=.
T Consensus 154 ------------~~v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPe----------------------------- 192 (347)
T CHL00081 154 ------------HLVDILLDSAASGWNTVEREGISIRHPARFVLIGSGNPE----------------------------- 192 (347)
T ss_pred ------------HHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCC-----------------------------
T ss_conf ------------999999999855808980464233057500688557865-----------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEEC-CCCHHHHHHHHHH-------H----------HHHH---H
Q ss_conf 0000001689996410567775220689872078426721-1105789999874-------2----------6779---9
Q gi|254780271|r 275 KDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLE-DLDENSLIRILSE-------P----------KNAL---I 333 (424)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~-~Lt~edl~rILte-------p----------knsL---i 333 (424)
+ ..+.|.+.-||-..|.+. +.+.++-..|+.. | ...+ +
T Consensus 193 ----E-----------------geLrp~llDRF~l~v~v~~~~~~e~R~eiv~~r~~f~~~p~~f~~~~~~~~~~l~~~I 251 (347)
T CHL00081 193 ----E-----------------GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRSNFDKNPENFREKYSESQDALKTQI 251 (347)
T ss_pred ----C-----------------CCCCHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf ----5-----------------6748888826322674588789899999999999765196999999887899999999
Q ss_pred HHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Q ss_conf 999999874498999968999999995510678-7423689999996
Q gi|254780271|r 334 KQYQCLFDMEDVELVFHEDALREIARCAIAHKT-GARGLRSILEKIL 379 (424)
Q Consensus 334 kQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~ni-GAR~LrtIiE~iL 379 (424)
.+.++++ =++.++++.+..|++.+..-+. |-|+=-..+.--.
T Consensus 252 ~~Ar~~L----~~V~v~~~~~~~i~~~~~~~~v~g~RA~I~l~raAR 294 (347)
T CHL00081 252 ILARQLL----PNVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAK 294 (347)
T ss_pred HHHHHHC----CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9998644----773559999999999999848998718999999999
No 45
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.5e-10 Score=94.34 Aligned_cols=112 Identities=26% Similarity=0.391 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH---------HHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185313101---------2211
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD---------ATTL 149 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd---------aT~~ 149 (424)
||||+..++++.-|+.+. + .+...||-||-|||||-+||.||+.++.+--..| |..+
T Consensus 19 vVGQ~~vv~~L~nai~~~-----------r---i~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I 84 (462)
T PRK06305 19 ILGQDAVVTVLKNALRFN-----------R---AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEI 84 (462)
T ss_pred HCCCHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 049099999999999849-----------9---76234303899859999999999996799998888988766888998
Q ss_pred HHHHHC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 111103----------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 150 TEAGYV----------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 150 TE~GYv----------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.+ |.. -+.|+. +|+|.+...+.--...+.|..|||.+.++.. .+|+|||.||..
T Consensus 85 ~~-g~~~DViEiDaAs~~gVdd-IRel~e~v~~~P~~~~yKVyIIDEvhmLs~~--------------AfNALLKtLEEP 148 (462)
T PRK06305 85 SS-GTSLDVIEIDGASHRGIED-IRQINETVLFTPSKSQYKIYIIDEVHMLTKE--------------AFNSLLKTLEEP 148 (462)
T ss_pred HC-CCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHHHHHCC
T ss_conf 63-8999868643553446689-9999977100886775059998152117999--------------999999986189
Q ss_pred E
Q ss_conf 0
Q gi|254780271|r 220 I 220 (424)
Q Consensus 220 ~ 220 (424)
-
T Consensus 149 P 149 (462)
T PRK06305 149 P 149 (462)
T ss_pred C
T ss_conf 8
No 46
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=3.2e-11 Score=99.14 Aligned_cols=93 Identities=34% Similarity=0.514 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHHHHCC
Q ss_conf 0859999999999986588752121013552256835884073321769999999871---8531310122111111035
Q gi|254780271|r 80 IGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 80 IGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~GYvG 156 (424)
.||+..++.+.-+++.. .++|+||.||+|||||.+|+++|+.+ +.||+.++++.++..-+..
T Consensus 1 ~~~~~~~~~l~~~~~~~---------------~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T cd00009 1 VGQEEAIEALREALELP---------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65 (151)
T ss_pred CCCHHHHHHHHHHHHCC---------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHH
T ss_conf 98579999999998187---------------998089989999886599999999712137982785477704677775
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5633035778876542277654223332233320
Q gi|254780271|r 157 EDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190 (424)
Q Consensus 157 ~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi 190 (424)
...... .........+.+..+++++||+|++
T Consensus 66 ~~~~~~---~~~~~~~~~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 66 ELFGHF---LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred HHHHHH---HHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf 760577---8898999999769986982016655
No 47
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.2e-10 Score=95.18 Aligned_cols=112 Identities=23% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH------HHHHHHH-
Q ss_conf 308599999999999865887521210135522568358840733217699999998718531310------1221111-
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA------DATTLTE- 151 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v------daT~~TE- 151 (424)
||||+.+++++.-|+.+. | .+.-.||.||.|||||-+||.+|+.++..--.. .|...+.
T Consensus 20 VIGQe~Vv~tL~nAI~~g--R------------IaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~~pC~~C~~~~~~ 85 (718)
T PRK07133 20 IKGQDHIIETLKNIIKSG--K------------ISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLIEPCQNCIENFNN 85 (718)
T ss_pred HCCCHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCC
T ss_conf 228599999999999749--9------------75058623899868899999999996799999999977021430478
Q ss_pred -HHHCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf -11035------563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 152 -AGYVG------EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 152 -~GYvG------~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
..++. ..|+ -+|+|.+...+.--...+-|..+||.+.++.. .+++|||.||..
T Consensus 86 s~DViEIDAASn~gVD-dIReLie~v~y~P~~gkYKVyIIDEvHMLS~~--------------AfNALLKtLEEP 145 (718)
T PRK07133 86 NLDIIEMDAASNNGVD-EIRELRENVKNLPQISKYKIYIIDEVHMLSKS--------------AFNALLKTLEEP 145 (718)
T ss_pred CCCEEEECCCCCCCHH-HHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHHCCC
T ss_conf 9873775455668889-99999998255887787249999662007999--------------999999850279
No 48
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2e-10 Score=93.49 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCE-------EEHHHHHHHH
Q ss_conf 308599999999999865887521210135522568358840733217699999998718531-------3101221111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPF-------TMADATTLTE 151 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF-------~~vdaT~~TE 151 (424)
||||+.+++++.-|+.+. | .+.-.||.||-|+|||-+||.||+.++... -.++.-+--.
T Consensus 18 vvGQe~vv~~L~nai~~~--r------------l~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~ 83 (560)
T PRK06647 18 LEGQDFVVETLKHSIEKN--K------------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSID 83 (560)
T ss_pred HCCCHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 039499999999999749--9------------77436632899878999999999996599999988887887888874
Q ss_pred HHHC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1103----------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 152 AGYV----------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 152 ~GYv----------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|.. -..|+. +|++.+...+.--...+.|+.+||.+..+.. .+|+|||.||..
T Consensus 84 ~g~~~DviEidaasn~~Vdd-IR~l~e~v~~~P~~~~yKV~IIDEahmLt~~--------------A~NALLKtLEEP 146 (560)
T PRK06647 84 NDSSLDVIEIDGASNTSVQD-VRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--------------AFNALLKTIEEP 146 (560)
T ss_pred CCCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEEECCHHHCCHH--------------HHHHHHHHHHCC
T ss_conf 59998757643645488899-9999998632876687069996465655999--------------999999986348
No 49
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1.2e-10 Score=95.09 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------313101221111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTE 151 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE 151 (424)
||||+.+++.+.-|+.+. + .+.-.||.||.|||||-+||.+|+.++. |--.++.-.-..
T Consensus 18 IIGQe~iv~~L~nAI~~~-----------R---iaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~ 83 (613)
T PRK05896 18 IIGQELIKKILVNAILNN-----------K---LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (613)
T ss_pred HCCCHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 238299999999999849-----------9---76227755899848899999999996699999999888887899985
Q ss_pred HHHC---------CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1103---------55-63303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 152 AGYV---------GE-DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 152 ~GYv---------G~-Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|.+ +. .|+ -+|++.+...+.--...+.|..+||.+.+... .+++|||.||..
T Consensus 84 ~g~h~DviEIdaasn~gID-eIReLie~~~~~P~~gkyKV~IIDEah~Ln~~--------------AaNALLKtLEEP 146 (613)
T PRK05896 84 TNQSVDIVELDAASNNGVD-EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------AWNALLKTLEEP 146 (613)
T ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHHHCCCCCCCCCEEEEECCHHHCCHH--------------HHHHHHHHCCCC
T ss_conf 6999986884065557889-99999997085875799459998162217999--------------999999853489
No 50
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.23 E-value=3.1e-11 Score=99.26 Aligned_cols=95 Identities=33% Similarity=0.580 Sum_probs=72.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58840733217699999998718531310122111111035563303577887654227765422333223332002333
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSD 195 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~ 195 (424)
|||.||.|||||.+|+.||+.++.||+.++++.+. ..|+|+- +..+.++.+.+ +....+|+++||+|.+.+...
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~-~~~~g~~-~~~i~~~f~~a----~~~~p~Il~iDe~d~l~~~~~ 74 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELV-SKYVGES-EKRLRELFEAA----KKLAPCVIFIDEIDALAGSRG 74 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC-CCCCCHH-HHHHHHHHHHH----HHCCCCEEEECHHHHHHCCCC
T ss_conf 98789999999999999999978985332420122-2334506-88899999999----974991898311677751678
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 333443210256898875310587
Q gi|254780271|r 196 NPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 196 ~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.. .+.....+++.||..+++.
T Consensus 75 ~~---~~~~~~~~~~~ll~~ld~~ 95 (131)
T pfam00004 75 SG---GDSESRRVVNQLLTELDGF 95 (131)
T ss_pred CC---CCCCCHHHHHHHHHHHHHC
T ss_conf 88---8875132687899998502
No 51
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.23 E-value=1.8e-10 Score=93.95 Aligned_cols=220 Identities=21% Similarity=0.304 Sum_probs=137.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH--
Q ss_conf 030859999999999986588752121013552256835884073321769999999871---853131012211111--
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA-- 152 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~-- 152 (424)
-+||+..|-+.+- ..-+|.-. ...+||+.|.+|+||+.+||.+-... +.||+.+||..+++.
T Consensus 7 ~liG~S~~m~~v~----~~~~~~A~---------~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~ 73 (325)
T PRK11608 7 NLLGEANSFLEVL----EQVSHLAP---------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (325)
T ss_pred CCEECCHHHHHHH----HHHHHHHC---------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
T ss_conf 9858999999999----99999968---------8999898898983799999999965886799977887798997788
Q ss_pred --HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf --103556330357788765422776542233322333200233333344321025689887531058701025655643
Q gi|254780271|r 153 --GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRK 230 (424)
Q Consensus 153 --GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk 230 (424)
-.-|.+.+.... -.....+..+++..|.+|+|||+.+... +|..||++++..... ..++.+
T Consensus 74 e~~LFG~~~g~~~~-~~~~~~g~le~a~gGTL~L~eI~~l~~~--------------~Q~~Ll~~l~~~~~~--r~g~~~ 136 (325)
T PRK11608 74 DSELFGHEAGAFTG-AQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLLRVIEYGELE--RVGGSQ 136 (325)
T ss_pred HHHHCCCCCCCCCC-CCCCCCCHHHCCCCCEEEEECHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCC
T ss_conf 99872775567677-5324687343568986997374547999--------------999999998649088--579987
Q ss_pred CCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-
Q ss_conf 2224302431000123220004678988764123433321111000000016899964105677752206898720784-
Q gi|254780271|r 231 HPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPV- 309 (424)
Q Consensus 231 ~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPi- 309 (424)
...-+...|-+++. .+ .+... .-.|.++|.-||.+
T Consensus 137 ~~~~~~RiIa~t~~---------~l---------------------------~~lv~--------~g~fr~dLy~rL~~~ 172 (325)
T PRK11608 137 PLQVNVRLVCATNA---------DL---------------------------PAMVN--------EGTFRADLLDRLAFD 172 (325)
T ss_pred CCCCCEEEEECCCH---------HH---------------------------HHHHH--------HCCCHHHHHHHHHHH
T ss_conf 66564688713322---------08---------------------------99998--------395679998565301
Q ss_pred EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 267211105--78999987426779999999987449899--996899999999551067874236899999967
Q gi|254780271|r 310 LATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDVEL--VFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 310 iV~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV~L--~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
.+.+-||.+ +|+..+. +.++.|+. ...|..+ .||++|++.+....|--|+ |-|+.++|+.+.
T Consensus 173 ~I~lPpLReR~eDI~~L~----~~fl~~~~---~~~~~~~~~~~s~~a~~~L~~y~WPGNv--rEL~n~ierav~ 238 (325)
T PRK11608 173 VVQLPPLRERQSDIMLMA----EHFAIQMC---RELGLPLFPGFTERARETLLNYRWPGNI--RELKNVVERSVY 238 (325)
T ss_pred HCCCCCHHHCCCCHHHHH----HHHHHHHH---HHCCCCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf 115868454710199999----99999999---9829998888899999999619999659--999999999998
No 52
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1.5e-10 Score=94.41 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHHHHHHHH
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853-------13101221111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMADATTLTE 151 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vdaT~~TE 151 (424)
||||+.+++++.-|+.+. + .+.-.||.||-|||||-+||.+|+.++.. --.++.-....
T Consensus 16 vIGQe~iv~~L~nAi~~~-----------R---l~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~ 81 (523)
T PRK08451 16 LIGQESVSKTLSLALDNN-----------R---LAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAAL 81 (523)
T ss_pred CCCCHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 049499999999999859-----------9---67158757899868899999999997599999989888788899986
Q ss_pred HHH----C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 110----3------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 152 AGY----V------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 152 ~GY----v------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|- + .+.|+ -+|+|.+...+.--...+.|..+||.+.++.. .+|+|||.||..
T Consensus 82 ~g~hpDViEiDaasn~gID-~IReLie~~~~~P~~gryKV~IIDEah~Lt~~--------------A~NALLKTLEEP 144 (523)
T PRK08451 82 EGRHIDIIEMDAASNRGID-DIRNLIEQTKYKPSMARFKIFIIDEVHMLTKE--------------AFNALLKTLEEP 144 (523)
T ss_pred CCCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHCCCC
T ss_conf 4899985510553336899-99999997235886797279998260304899--------------999999970389
No 53
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.5e-10 Score=94.48 Aligned_cols=111 Identities=25% Similarity=0.433 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE-------EHH-HHHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185313-------101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT-------MAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~-------~vd-aT~~T 150 (424)
||||++..+++..|+.+. | .+.-+||.||-|||||-.||.|||-+|..=- .++ |...+
T Consensus 18 vvgQ~~v~~~L~n~i~~~--~------------i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~ 83 (541)
T PRK05563 18 VVGQEHITTTLKNQIINN--R------------IAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKIN 83 (541)
T ss_pred HCCCHHHHHHHHHHHHCC--C------------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 248499999999999849--9------------32045303879958999999999995799988898575148899985
Q ss_pred HHHHC----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103----------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV----------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv----------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+ |.. -+.|+ .||++.+...+.--...+.+..+||++.++. +.||+|||.+|..
T Consensus 84 ~-g~~~Dv~Eidaas~~gvd-~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls~--------------~a~nallKtlEeP 146 (541)
T PRK05563 84 E-GLLMDVIEIDAASNNGVD-DIREIIENVKYPPQEGKYKVYIMDEVHMLSQ--------------GAVNAFLKTLEEP 146 (541)
T ss_pred C-CCCCCEEEECCCCCCCHH-HHHHHHHHCEECCCCCCEEEEEEECCCCCCH--------------HHHHHHHHHHHCC
T ss_conf 6-898873662444447889-9999997610487678705999977233899--------------9999999998548
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.9e-10 Score=93.68 Aligned_cols=207 Identities=27% Similarity=0.414 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
-+.|+- |++| |||++.|..+.|.+.-.-.|- + ..-.+||.||.|.|||-||.-+|.-+++.+-..
T Consensus 19 ~lRP~~----l~ef-iGQ~~vk~~L~ifI~AAk~r~----e------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t 83 (332)
T COG2255 19 SLRPKT----LDEF-IGQEKVKEQLQIFIKAAKKRG----E------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT 83 (332)
T ss_pred CCCCCC----HHHH-CCHHHHHHHHHHHHHHHHHCC----C------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf 358654----8885-183999999999999998449----8------767478647998768889999999856773763
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 12211111103556330357788765422776542233322333200233333344321025689887531058701025
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~ 224 (424)
-.-.+--+| ||...... -.+..++|+|||-.+++. |...|...||+-.+.+.
T Consensus 84 sGp~leK~g-----------DlaaiLt~---Le~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~ 135 (332)
T COG2255 84 SGPALEKPG-----------DLAAILTN---LEEGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDII 135 (332)
T ss_pred CCCCCCCHH-----------HHHHHHHC---CCCCCEEEEEHHHHCCHH--------------HHHHHHHHHHHEEEEEE
T ss_conf 662015726-----------59999863---986776777255314742--------------89896467531057789
Q ss_pred CCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH-HHH
Q ss_conf 6556432224302431000123220004678988764123433321111000000016899964105677752206-898
Q gi|254780271|r 225 PQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLI-PEF 303 (424)
Q Consensus 225 ~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gli-PEl 303 (424)
...| +....+.+|-.. |..-||- . ..|++ --|
T Consensus 136 IG~g---p~Arsv~ldLpp--FTLIGAT---------------------T---------------------r~G~lt~PL 168 (332)
T COG2255 136 IGKG---PAARSIRLDLPP--FTLIGAT---------------------T---------------------RAGMLTNPL 168 (332)
T ss_pred ECCC---CCCCEEECCCCC--EEEEEEC---------------------C---------------------CCCCCCCHH
T ss_conf 7248---755347637998--1375101---------------------3---------------------466456336
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHHH
Q ss_conf 720784267211105789999874267799999999874498999968999999995510-67874236899
Q gi|254780271|r 304 IGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRSI 374 (424)
Q Consensus 304 ~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~LrtI 374 (424)
.-||.++..|+--+.+||.+|+. .+..+| .++.+++|..+||+.+-. +.+--|=||+|
T Consensus 169 rdRFGi~~rlefY~~~eL~~Iv~--------r~a~~l-----~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 169 RDRFGIIQRLEFYTVEELEEIVK--------RSAKIL-----GIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHCCCEEEEECCCHHHHHHHHH--------HHHHHH-----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88628604540588899999999--------888873-----877685799999986369938999999999
No 55
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3e-10 Score=92.30 Aligned_cols=111 Identities=27% Similarity=0.427 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE-------EHHH-HHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185313-------1012-2111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT-------MADA-TTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~-------~vda-T~~T 150 (424)
||||+..++.+.-|+.+. | .+.-.||.||-|||||-+||.+|+.++..-. .++. ...+
T Consensus 18 vvGQ~~v~~~L~nai~~~--r------------i~HAyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06674 18 VVGQEHVTKTLQNALLQE--K------------VSHAYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGIT 83 (563)
T ss_pred HCCHHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 248099999999999849--9------------65034312899868999999999985799999988776687899985
Q ss_pred HHHHC---------C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5-563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------G-EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G-~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|-+ . ..|+ -||++.+...+.--...+.+..+||.+..+. +.+|+|||.||..
T Consensus 84 -~g~~~DviEiDaasn~gVd-~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~--------------~A~NALLKtLEEP 146 (563)
T PRK06674 84 -NGSISDVLEIDAASNNGVD-EIRDIRDKVKFAPSAVEYKVYIIDEVHMLSI--------------GAFNALLKTLEEP 146 (563)
T ss_pred -CCCCCCEEEECCCCCCCHH-HHHHHHHHHCCCCCCCCEEEEEEECHHHCCH--------------HHHHHHHHHHHCC
T ss_conf -5899877985255557879-9999999826488678737999854563799--------------9999999986388
No 56
>KOG0738 consensus
Probab=99.19 E-value=7.5e-11 Score=96.55 Aligned_cols=134 Identities=28% Similarity=0.397 Sum_probs=98.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCC
Q ss_conf 03085999999999998658875212101355225683588407332176999999987185313101221111110355
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~ 157 (424)
-|.|-++||+.+--||---..=-.. ....+. .=+-+||+||.|+|||.||+.+|---+.-|-.|-++.+|- .|-|+
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~-F~Girr--PWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS-KwRGe 288 (491)
T KOG0738 213 DIAGLHEAKKLLKEAVVLPIWMPEF-FKGIRR--PWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS-KWRGE 288 (491)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHH-HHHCCC--CCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEECHHHHHH-HHCCC
T ss_conf 6316499999999887544424888-742446--5300055679997478999999886167278740245655-53252
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 63303577887654227765422333223332002333333443210256898875310587010
Q gi|254780271|r 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 158 Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
. |-++|-|.+.|-. ..-.+|||||||-+.....+. +...+..-|-..||..|+|....
T Consensus 289 S-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738 289 S-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred H-HHHHHHHHHHHHH----HCCCEEEHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6-9999999999987----488535335677887257986--50367888888999986334444
No 57
>KOG0734 consensus
Probab=99.19 E-value=1e-10 Score=95.56 Aligned_cols=140 Identities=29% Similarity=0.433 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 9987899999742030859999999999986588752121--01355225683588407332176999999987185313
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSS--KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~--~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
-+.|.+++.--=+.|-|-|+||.-+---| +|-+ .+. ..+.-. -|+-|||+||.|+|||+|||.+|--.+|||-
T Consensus 292 ev~p~~~~nv~F~dVkG~DEAK~ELeEiV--efLk--dP~kftrLGGK-LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF 366 (752)
T KOG0734 292 EVDPEQMKNVTFEDVKGVDEAKQELEEIV--EFLK--DPTKFTRLGGK-LPKGVLLVGPPGTGKTLLARAVAGEAGVPFF 366 (752)
T ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHH--HHHC--CCHHHHHCCCC-CCCCEEEECCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 46846641655002147278999999999--9860--90876431475-8885387689997556999986055689747
Q ss_pred EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1012211111103556330357788765422776542233322333200233333344321025689887531058
Q gi|254780271|r 143 MADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 143 ~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
-.--+.|-|+ |||-- -.-+|+|..+|. +..-+||||||||-+..+....... ...-..|-||-.|+|
T Consensus 367 ~~sGSEFdEm-~VGvG-ArRVRdLF~aAk----~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDG 433 (752)
T KOG0734 367 YASGSEFDEM-FVGVG-ARRVRDLFAAAK----ARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDG 433 (752)
T ss_pred ECCCCCHHHH-HHCCC-HHHHHHHHHHHH----HCCCEEEEEECHHHHCCCCCCCHHH---HHHHHHHHHHHHHCC
T ss_conf 4166204454-22014-899999999987----3498599972002205667862778---999899999998428
No 58
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.19 E-value=2.2e-10 Score=93.23 Aligned_cols=201 Identities=24% Similarity=0.383 Sum_probs=134.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 97420308599999999999865887521210135522568358840733217699999998718531310122111111
Q gi|254780271|r 74 VLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG 153 (424)
Q Consensus 74 ~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~G 153 (424)
.|++|| ||++-|..+.+++.=--.| .+. .-.+||.||-|.|||-||.-+|.-|++-.-+.-+=.+--+
T Consensus 2 ~L~eFi-GQ~~vk~~L~l~I~AAk~R----~e~------LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kP- 69 (305)
T TIGR00635 2 LLAEFI-GQEKVKEQLQLFIEAAKMR----QEA------LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP- 69 (305)
T ss_pred CCHHCC-CCHHHHHHHHHHHHHHHHC----CCC------CCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCH-
T ss_conf 801105-8288999999999999824----897------3416631756874678999999983893267406755475-
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCC
Q ss_conf 03556330357788765422776542233322333200233333344321025689887531058701025655643222
Q gi|254780271|r 154 YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQ 233 (424)
Q Consensus 154 YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~ 233 (424)
.||.....+ -.++.|.|+|||-.+++. |...|.-.||+=.+.+.-..| |.
T Consensus 70 ----------gDlaaiLt~---L~~gDVLFIDEIHRL~p~--------------~EE~LYpAMEDF~lDi~IG~G---p~ 119 (305)
T TIGR00635 70 ----------GDLAAILTN---LEEGDVLFIDEIHRLSPA--------------IEELLYPAMEDFRLDIVIGKG---PS 119 (305)
T ss_pred ----------HHHHHHHHH---CCCCCEEECCHHHHCCHH--------------HHHHCCCCCCCEEEEEEEECC---CC
T ss_conf ----------789999970---568963101256504833--------------453105300121787787128---98
Q ss_pred CCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH-HHHHHHCCCCEEE
Q ss_conf 430243100012322000467898876412343332111100000001689996410567775220-6898720784267
Q gi|254780271|r 234 QEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL-IPEFIGRLPVLAT 312 (424)
Q Consensus 234 ~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gl-iPEl~GRlPiiV~ 312 (424)
...+.+|--- |-.-||- - ..|+ .-=|.-||-++-.
T Consensus 120 Ar~v~ldLpP--FTLvGAT---------------------T---------------------R~G~lt~PLrdRFG~~~r 155 (305)
T TIGR00635 120 ARSVRLDLPP--FTLVGAT---------------------T---------------------RAGMLTSPLRDRFGIILR 155 (305)
T ss_pred CCEEEECCCC--CCCCCCC---------------------C---------------------CCCCCCCCHHHHHHHHHH
T ss_conf 5257606869--4420000---------------------3---------------------477410313345447454
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCCCCHHHHH
Q ss_conf 211105789999874267799999999874498999968999999995510-6787423689
Q gi|254780271|r 313 LEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKTGARGLRS 373 (424)
Q Consensus 313 L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~niGAR~Lrt 373 (424)
|+==|.++|.+|+ +.+-.+ .+++.+++|..+||+.+=- +-+=-|=||+
T Consensus 156 l~fY~~~EL~~Iv--------~R~A~~-----L~~ei~~~~a~~IArrSRGTPRIAnRLLRR 204 (305)
T TIGR00635 156 LEFYTPEELAEIV--------SRSAGL-----LNIEIEQEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred CCCCCHHHHHHHH--------HHHHHH-----CCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 0268987899998--------753344-----143007789999987547863788877676
No 59
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.19 E-value=5.8e-11 Score=97.32 Aligned_cols=111 Identities=29% Similarity=0.460 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH--------HHHHHH
Q ss_conf 308599999999999865887521210135522568358840733217699999998718531310--------122111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA--------DATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v--------daT~~T 150 (424)
||||+.-.+++.-|+-+- |+ ..=.||-||=|||||=+||=|||-||-+ ..- -|...+
T Consensus 16 ~~GQ~~iv~tL~NAi~~~--ri------------~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~ 80 (363)
T TIGR02397 16 VIGQEHIVKTLKNAIKNG--RI------------AHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEIN 80 (363)
T ss_pred CCCCHHHHHHHHHHHHHC--CC------------CCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH
T ss_conf 235179999999999718--96------------6234502859976355899999986588-78778777750227765
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+=..+ =..||. ||+|.+...+.--...|-|=-|||+--++.. .+|+|||-||..
T Consensus 81 ~g~~~DviEiDAASN~gVD~-IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~--------------AFNALLKTLEEP 143 (363)
T TIGR02397 81 SGSSLDVIEIDAASNNGVDD-IRELRENVKYAPSKGKYKVYIIDEVHMLSKS--------------AFNALLKTLEEP 143 (363)
T ss_pred CCCCCCEEEECCCCCCCHHH-HHHHHHHHCCCCCCCCCCEEEEECCCCCCHH--------------HHHHHHHHHCCC
T ss_conf 28986668864865687889-9999873036875544335887323028656--------------899987652279
No 60
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.19 E-value=1.3e-10 Score=94.85 Aligned_cols=194 Identities=22% Similarity=0.333 Sum_probs=123.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH---HHCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68358840733217699999998---71853131012211111----103556330357788765422776542233322
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLAR---IIDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk---~l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
..+||+.|.||+||+.+||.+-. ..+.||+.+||..+.+. -..|.+... --....+..+.|..|.+|+|
T Consensus 348 ~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~~~~~----~~~g~~g~~e~A~gGTL~Ld 423 (639)
T PRK11388 348 SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLE 423 (639)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCC----CCCCCCCHHHCCCCCEEEEC
T ss_conf 99689889898109999999995577789981898789898467899873877676----43466862440369828846
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
||+.+... +|..||++++..... +.++.+...-+...|-+++. .+
T Consensus 424 eI~~lp~~--------------~Q~~LlrvL~~~~~~--r~g~~~~~~vdvRiiaat~~---------~l---------- 468 (639)
T PRK11388 424 KVEYLSVE--------------LQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTA---------DL---------- 468 (639)
T ss_pred CHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCCEEEEEEEEEEECCH---------HH----------
T ss_conf 72649999--------------999999998659378--56999466642799973645---------08----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCC-EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3332111100000001689996410567775-2206898720784-267211105--78999987426779999999987
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPV-LATLEDLDE--NSLIRILSEPKNALIKQYQCLFD 341 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPi-iV~L~~Lt~--edl~rILtepknsLikQy~~Ll~ 341 (424)
.+++. -.|..+|--||-. .+.+-||-+ +|+-.+. ..++.++..-.
T Consensus 469 --------------------------~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~----~~~l~~~~~~~- 517 (639)
T PRK11388 469 --------------------------AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV----NNKLRSLEKRF- 517 (639)
T ss_pred --------------------------HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHH----HHHHHHHHHHC-
T ss_conf --------------------------99987498549999876744105733232534399999----99999999971-
Q ss_pred HCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 449899996899999999551067874236899999967
Q gi|254780271|r 342 MEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 342 ~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
+-.+.|+++|++.+....|--|+ |-|+.++|+.+.
T Consensus 518 --~~~~~ls~~a~~~L~~y~WPGNv--rEL~nvl~~a~~ 552 (639)
T PRK11388 518 --STRLKIDDDALARLVSYRWPGND--FELRSVIENLAL 552 (639)
T ss_pred --CCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf --99999899999999728999799--999999999998
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.18 E-value=3.3e-10 Score=92.05 Aligned_cols=120 Identities=28% Similarity=0.415 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871853131012
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
.|+.+.+ ||||+++++.+.--+. .|.. ....++.+||.||.|||||-+|+.||+-++...+-.+|
T Consensus 9 RPk~~~d-----ivg~~~~v~~l~~Wl~-~w~~---------g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNA 73 (403)
T PRK04195 9 RPKSLSD-----VVGNEKAKKQLREWIE-SWLK---------GKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 73 (403)
T ss_pred CCCCHHH-----HHCCHHHHHHHHHHHH-HHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 8998999-----8588999999999999-9873---------99657469988939987999999999984998599771
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 21111110355633035778876542--27765422333223332002333333443210256898875310587
Q gi|254780271|r 147 TTLTEAGYVGEDVENIILKLLQAADY--NVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 147 T~~TE~GYvG~Dvesii~~L~~~a~~--~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+-.-- . ..|++.+..+.. .+-...+-+|++||+|-++.. ...|-+++|+++++.+
T Consensus 74 SD~R~-------~-~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~----------~d~gg~~al~~~ik~s 130 (403)
T PRK04195 74 SDQRT-------K-DVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGN----------ADRGGVRAILEIIKKA 130 (403)
T ss_pred CCCCC-------H-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCH----------HHHHHHHHHHHHHHCC
T ss_conf 01147-------8-99999999876068877887349996343445724----------4479999999998548
No 62
>pfam06689 zf-C4_ClpX ClpX C4-type zinc finger. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type. This presumed zinc binding domain is found at the N-terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. The molecular function of this domain is now known.
Probab=99.18 E-value=1.1e-11 Score=102.52 Aligned_cols=39 Identities=77% Similarity=1.438 Sum_probs=36.7
Q ss_pred EEECCCCCCHHHHHCCCCCCCCEECHHHHHHHHHHHHHH
Q ss_conf 561689888657422113899134317999999998987
Q gi|254780271|r 15 LYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREE 53 (424)
Q Consensus 15 ~~CsfCg~~~~~v~~li~g~~~~iC~~Ci~~~~~i~~~e 53 (424)
++||||||++++|.+||+||++||||+||++|++|+.++
T Consensus 1 ~~CSFCgk~~~ev~~Li~G~~~~IC~~Ci~~~~~il~~~ 39 (39)
T pfam06689 1 LRCSFCGKSQSEVKKLIAGPGVYICDECVELCYEILEEE 39 (39)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHCC
T ss_conf 974589997888856414898687299999999997649
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.17 E-value=2.9e-11 Score=99.45 Aligned_cols=98 Identities=29% Similarity=0.544 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.||-|||-||-|||||+||+++|.-.+|-|++|=+|.|-. -|+|+- -..++++.+-| +...-+|+|+||||-|+
T Consensus 155 PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~-KyIGEG-ArLV~~~F~LA----kEKaPsIiFIDEiDAia 228 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR-KYIGEG-ARLVREVFELA----KEKAPSIIFIDEIDAIA 228 (364)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHH-HHHCCH-HHHHHHHHHHH----HCCCCCEEEEECHHHHH
T ss_conf 8986570075797688999986314551268860444444-441331-68999999985----30698168610133354
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 233333344321025689887531058
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
.+....... ....||..|+|+|..
T Consensus 229 akR~~~~Ts---GdREV~RTlmQLLAE 252 (364)
T TIGR01242 229 AKRVDSSTS---GDREVQRTLMQLLAE 252 (364)
T ss_pred HHHCCCCCC---CCHHHHHHHHHHHHH
T ss_conf 321146778---731578899999975
No 64
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.16 E-value=3.6e-10 Score=91.76 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=137.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH-
Q ss_conf 203085999999999998658875212101355225683588407332176999999987---1853131012211111-
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA- 152 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~- 152 (424)
.-+|||..|-+.+ |+...++- -...|||+.|.|||||..+||.+-.. .+-||+.++|..+.|.
T Consensus 186 ~elIG~S~~m~~l----~~~i~~vA---------~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l 252 (510)
T PRK05022 186 GEMIGQSPAMQQL----KKEIEVVA---------ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL 252 (510)
T ss_pred CCEEECCHHHHHH----HHHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH
T ss_conf 9752089999999----99999996---------8999889889898139999999996688789985788899998567
Q ss_pred ------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf ------10355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 153 ------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 153 ------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
||+---... -.....+..+.|..|.+|+|||+.+... +|..||++++.... .+-
T Consensus 253 ~EseLFGh~kGaFtG----A~~~r~G~fe~A~gGTLfLDEI~~Lpl~--------------~Q~KLLrvLq~g~i--qrv 312 (510)
T PRK05022 253 AESELFGHVKGAFTG----AISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEI--QRV 312 (510)
T ss_pred HHHHHCCCCCCCCCC----CCCCCCCCEEECCCCEEEEECHHHCCHH--------------HHHHHHHHHHCCEE--EEC
T ss_conf 899865977788688----6556788101778987987574549999--------------99999999847958--855
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
|+.+...-+...|-++|. .+.+. ...+ -|...|--|
T Consensus 313 G~~~~~~vdvRIIAATnr---------dL~~~---------------------------V~~G--------~FR~DLYyR 348 (510)
T PRK05022 313 GSDRSLRVDVRVIAATNR---------DLREE---------------------------VLAG--------RFRADLYHR 348 (510)
T ss_pred CCCCEEEEEEEEEEECCC---------CHHHH---------------------------HHCC--------CHHHHHHHH
T ss_conf 899466666899960783---------59999---------------------------8839--------638999987
Q ss_pred CCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7842-67211105--78999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r 307 LPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 307 lPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|-+. +.+-||-+ +|+.-+. .-.+.++...+... .+.|+++|++.+....|--|+ |-|+.++|+...
T Consensus 349 Lsv~~I~vPPLRER~eDI~lLa----~~FLe~~~~~~g~~--~~~ls~eAl~~L~~Y~WPGNV--RELenvIeRA~l 417 (510)
T PRK05022 349 LSVFPLPVPPLRERGDDVLLLA----GYFLEQNRLRLGLS--SLRLSPDAQAALLQYDWPGNV--RELEHVISRAAL 417 (510)
T ss_pred HHCCCCCCCCHHHCHHHHHHHH----HHHHHHHHHHCCCC--CCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf 6204034808655554099999----99999999982989--898889999999709999789--999999999999
No 65
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.15 E-value=7.5e-10 Score=89.53 Aligned_cols=198 Identities=19% Similarity=0.285 Sum_probs=130.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---1853131012211111----10355633035778876542277654223332
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
...+||+.|++|+||+.+||.+-.. .+.||+.++|..+++. ..-|.+-... ....+...+..+.|..|.+|+
T Consensus 160 ~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf-~ga~~~~~g~~e~a~~GTLfL 238 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF-TGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHCCCCCEEH
T ss_conf 8997899898982699999999974887799957876788997789999708766787-886424587366438992656
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
|||+.+... +|..||..++..... +.++.+...-+...|-+++.-
T Consensus 239 deI~~L~~~--------------~Q~kLl~~L~~~~~~--~~g~~~~~~~d~RiIaat~~~------------------- 283 (469)
T PRK10923 239 DEIGDMPLD--------------VQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQN------------------- 283 (469)
T ss_pred HHHHHCCHH--------------HHHHHHHHHHCCCEE--ECCCCCEEEECCEEEEECCCC-------------------
T ss_conf 636648999--------------999999998559378--579985122143799707879-------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCC-EEEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43332111100000001689996410567775-2206898720784-267211105--7899998742677999999998
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPV-LATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPi-iV~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
..+++. -.|.++|--||.+ .+.+-||.+ +|+..+. +.++.++...+
T Consensus 284 --------------------------L~~~v~~g~Fr~dLyyrL~~~~I~lPpLReR~eDI~~L~----~~fl~~~~~~~ 333 (469)
T PRK10923 284 --------------------------LEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAREL 333 (469)
T ss_pred --------------------------HHHHHHHCCHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH----HHHHHHHHHHC
T ss_conf --------------------------999866081779999864424015846544653499999----99999999985
Q ss_pred HHCCC-EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 74498-99996899999999551067874236899999967
Q gi|254780271|r 341 DMEDV-ELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 341 ~~egV-~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|. -..|+++|++.+....|--|+ |-|+.++|+.+.
T Consensus 334 ---~~~~~~~s~~a~~~L~~y~WPGNv--rEL~n~ier~~~ 369 (469)
T PRK10923 334 ---GVEAKLLHPETEAALTRLAWPGNV--RQLENTCRWLTV 369 (469)
T ss_pred ---CCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf ---999787899999999749999879--999999999998
No 66
>KOG0730 consensus
Probab=99.13 E-value=2.5e-10 Score=92.88 Aligned_cols=132 Identities=31% Similarity=0.451 Sum_probs=94.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCC
Q ss_conf 0308599999999999865887521210135522-568358840733217699999998718531310122111111035
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei-~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG 156 (424)
-|=||++-|+.+..+|--- +.++..-.+--| .|+-|||-||-|||||.+||.||...+.+|+-+-.-.+.- -|||
T Consensus 435 dIGGlE~lK~elq~~V~~p---~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s-k~vG 510 (693)
T KOG0730 435 DIGGLEELKRELQQAVEWP---LKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS-KYVG 510 (693)
T ss_pred HCCCHHHHHHHHHHHHHHH---HHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHH-HHCC
T ss_conf 0457899999999998616---65659998725788754777789986247899998646358726415789987-7518
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 56330357788765422776542233322333200233333344321025689887531058701
Q gi|254780271|r 157 EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIA 221 (424)
Q Consensus 157 ~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~ 221 (424)
+. |.-|+++...|. .+.-.|+|+||||-++....+.+. -..+-|.+.||..|+|-..
T Consensus 511 eS-Er~ir~iF~kAR----~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730 511 ES-ERAIREVFRKAR----QVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred CH-HHHHHHHHHHHH----HCCCEEEEHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHCCCCCC
T ss_conf 25-899999999986----269837744666666630478755---1489999999987004101
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.13 E-value=5.5e-10 Score=90.49 Aligned_cols=103 Identities=33% Similarity=0.439 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----EEEHHHHHHHHHH
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853-----1310122111111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-----FTMADATTLTEAG 153 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-----F~~vdaT~~TE~G 153 (424)
|+||++++..+--.+.+ + . ..|+||-||.|||||-+|+.||+-+..+ ++-..|+.-.
T Consensus 18 i~g~~~~~~~L~~~i~~------------~-~--~phlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r--- 79 (318)
T PRK00440 18 VVGQEEIVERLKSFVKE------------K-N--MPHLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER--- 79 (318)
T ss_pred HCCCHHHHHHHHHHHHC------------C-C--CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC---
T ss_conf 41969999999999987------------9-9--8669888959988999999999997698643476895164566---
Q ss_pred HCCCCCCCHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0355633035778876-54-22776542233322333200233333344321025689887531058
Q gi|254780271|r 154 YVGEDVENIILKLLQA-AD-YNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 154 YvG~Dvesii~~L~~~-a~-~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
|-| ++++.+.. +. .......+.++++||+|..+.. .|++|++.+|.
T Consensus 80 --~id---~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~--------------aq~aL~~~mE~ 127 (318)
T PRK00440 80 --GID---VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEM 127 (318)
T ss_pred --CHH---HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHHHC
T ss_conf --717---8999999999726778997389998685532255--------------67888764310
No 68
>KOG0733 consensus
Probab=99.13 E-value=4.2e-11 Score=98.34 Aligned_cols=99 Identities=37% Similarity=0.574 Sum_probs=79.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25683588407332176999999987185313101221111110355633035778876542277654223332233320
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi 190 (424)
..|+-+|+-||.|||||.||+++|.-+++||..+-||..- .||.|+. |.-|++|.+.|... .-+||||||||-|
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~~----aPcivFiDeIDAI 294 (802)
T KOG0733 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGES-EKKIRELFDQAKSN----APCIVFIDEIDAI 294 (802)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH-CCCCCCC-HHHHHHHHHHHHCC----CCEEEEEECCCCC
T ss_conf 7997516448998647899999752128854851414653-1557522-89999999987366----9759985110013
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0233333344321025689887531058
Q gi|254780271|r 191 SRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 191 ~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
+++.+. ..|+....-|-|.|- -|++
T Consensus 295 ~pkRe~--aqreMErRiVaQLlt-~mD~ 319 (802)
T KOG0733 295 TPKREE--AQREMERRIVAQLLT-SMDE 319 (802)
T ss_pred CCCHHH--HHHHHHHHHHHHHHH-HHHC
T ss_conf 644045--788999999999998-5100
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=4e-10 Score=91.44 Aligned_cols=106 Identities=28% Similarity=0.439 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC------------------
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853------------------
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP------------------ 140 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P------------------ 140 (424)
+|||+.-.+++.-|+-+. |+ ..-+||.||-|||||-+||-|||-||..
T Consensus 18 ~vGQ~~v~~~l~nal~~~--rl------------~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C~~i~ 83 (816)
T PRK07003 18 LVGQEHVVRALTHALDGG--RL------------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (816)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 238499999999999709--86------------3147511789888889999999986789999989787755578775
Q ss_pred ------EEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ------13101221111110355633035778876542277654223332233320023333334432102568988753
Q gi|254780271|r 141 ------FTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 141 ------F~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLk 214 (424)
++-+||.+-| -|+. +|+|++...|.--+..+.|.+|||+--++.. -+|+|||
T Consensus 84 ~g~~~d~iEiDaAS~~-------~vd~-~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~--------------afnalLK 141 (816)
T PRK07003 84 EGRFVDYVEMDAASNR-------GVDE-MAALLERAVYAPVDARFKVYMIDEVHMLTNH--------------AFNAMLK 141 (816)
T ss_pred CCCCCCEEEEECCCCC-------CHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHH
T ss_conf 5887754786355435-------7689-9999986224786674479998415433999--------------9999998
Q ss_pred HCCCCE
Q ss_conf 105870
Q gi|254780271|r 215 IMEGTI 220 (424)
Q Consensus 215 ileg~~ 220 (424)
.||..-
T Consensus 142 tlEepP 147 (816)
T PRK07003 142 TLEEPP 147 (816)
T ss_pred HHCCCC
T ss_conf 403798
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.3e-09 Score=87.92 Aligned_cols=59 Identities=36% Similarity=0.546 Sum_probs=47.5
Q ss_pred HHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 000269987899999742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 60 KSHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 60 ~~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
......|.|++-.+ +|||++|.+.+.-|+ +.-+ .+.-.||.||-|+|||-+|+++|+.+
T Consensus 11 d~~~g~p~Pr~~~~-----liGq~~~~~~L~~a~----~~gR----------l~HA~Lf~GP~GiGKaTlA~~~A~~L 69 (352)
T PRK09112 11 DDIDGVPSPSENNR-----LFGHEEARAFLAQAY----REGR----------LHHALLFEGPEGIGKATLAFHLANHI 69 (352)
T ss_pred CCCCCCCCCCCHHH-----HCCHHHHHHHHHHHH----HCCC----------CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 68899989644646-----278699999999999----8499----------65246535899808999999999998
No 71
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.13 E-value=7.2e-10 Score=89.66 Aligned_cols=55 Identities=33% Similarity=0.617 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0269987899999742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 62 HEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 62 ~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
-..++-|..+ +| .|||||+|.+++..|..|| .|+|||||-|+||+.|||.+|++|
T Consensus 20 T~di~iP~~l---id-qVIGQe~Av~~i~~Aa~qr-----------------rhvlliG~PGtGKSmlakam~elL 74 (637)
T PRK13765 20 TSDIEVPKLL---ID-QVIGQEHAVEVIKKAAKQR-----------------RHVMLIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred CCCCCCCCCC---CC-CCCCHHHHHHHHHHHHHHH-----------------CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 1136689852---33-2457199999999999843-----------------738986899987999999999757
No 72
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.12 E-value=4.9e-11 Score=97.84 Aligned_cols=110 Identities=27% Similarity=0.388 Sum_probs=75.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHHHHHH-HHHCCC----CCCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35884073321769999999871-85313101221111-110355----633035--77887654227765422333223
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII-DVPFTMADATTLTE-AGYVGE----DVENII--LKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT~~TE-~GYvG~----Dvesii--~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
+|||+||+|||||.+|+.+|+.+ +.|+..+.++..|. ...+|. +-.... ..|+.+. ...+++++||
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~------~~g~vl~lDE 74 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAA------REGEIAVLDE 74 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCC------CCCCEEEECC
T ss_conf 9899989975699999999998079831112146556522205734237993578155141010------1286899634
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC-----CCCEEEEECCHH
Q ss_conf 3320023333334432102568988753105870102565564322-----243024310001
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP-----QQEFLQVDTTNI 244 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~-----~~~~~~Idt~ni 244 (424)
|+++.+. +|+.|+.+||.....++..+..-.. ..++..|-|.|.
T Consensus 75 in~a~~~--------------v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~ 123 (139)
T pfam07728 75 INRANPD--------------VLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNP 123 (139)
T ss_pred HHHCCHH--------------HHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 3448999--------------999999997489698368972733666678999699997589
No 73
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.11 E-value=5.8e-10 Score=90.30 Aligned_cols=198 Identities=16% Similarity=0.263 Sum_probs=125.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---18531310122111111----0355633035778876542277654223332
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEAG----YVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~G----YvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
...+||+.|+||+||..+||.+-.. -+.||+.++|..+++.- .-|..-+..- .-.....+..+.|..|.+|+
T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaft-ga~~~~~g~~~~A~gGTLfL 239 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFT-GADKRREGRFVEADGGTLFL 239 (441)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCEEECCCCEECC
T ss_conf 89948998999810999999999657877898079878989845558986177556878-96534689877889982550
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
|||+.+... .|..||+.++..... +-|+.+....+...|-++|. .+
T Consensus 240 deI~~l~~~--------------~Q~kLl~~l~~~~~~--~~g~~~~~~~d~RiIaat~~---------~l--------- 285 (441)
T PRK10365 240 DEIGDISPM--------------MQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHR---------DL--------- 285 (441)
T ss_pred CCCCCCCHH--------------HHHHHHHHHHHHHHC--CCCCCCEEECCCEEEECCCC---------CH---------
T ss_conf 231529999--------------999999877752100--05887344136379983788---------99---------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHCCC-CEEEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 433321111000000016899964105677752-20689872078-4267211105--7899998742677999999998
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVKF-GLIPEFIGRLP-VLATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~-gliPEl~GRlP-iiV~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
.+++.. .|.++|--||. +.+.+-||.+ +|+-.+. +.+++++....
T Consensus 286 ---------------------------~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~~~ 334 (441)
T PRK10365 286 ---------------------------AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAERN 334 (441)
T ss_pred ---------------------------HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHC
T ss_conf ---------------------------99988198258999886011137826000620099999----99999999984
Q ss_pred HHCCCEE-EECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7449899-996899999999551067874236899999967
Q gi|254780271|r 341 DMEDVEL-VFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 341 ~~egV~L-~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|... .|+++|++.+....|--|+ |-|+.++|+.+.
T Consensus 335 ---~~~~~~~s~~a~~~L~~y~WPGNv--REL~n~iera~~ 370 (441)
T PRK10365 335 ---RKAVKGFTPQAMDLLIHYDWPGNI--RELENAVERAVV 370 (441)
T ss_pred ---CCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf ---999888899999999709999899--999999999999
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.5e-09 Score=87.44 Aligned_cols=113 Identities=30% Similarity=0.418 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCE-----
Q ss_conf 878999997420308599999999999865887521210135522568358840733217699999998718531-----
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPF----- 141 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF----- 141 (424)
.|+...+ +|||+...+++.-|+-+- + .+.-.||-||-|||||-.||-+|+.++-.-
T Consensus 16 RP~~f~~-----liGQ~~~~~~l~n~i~~~-----------~---~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~ 76 (507)
T PRK06645 16 RPSNFAE-----LQGQEVLVKVLSYTILND-----------R---LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred CCCCHHH-----HCCCHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7997656-----239399999999999739-----------9---66347745879978899999999996799988889
Q ss_pred -----------------------EEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -----------------------310122111111035563303577887654227765422333223332002333333
Q gi|254780271|r 142 -----------------------TMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPS 198 (424)
Q Consensus 142 -----------------------~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~ 198 (424)
+-.||.+-|. | .-+|+|.+.+.+..-.+.+-|..+||+...+..
T Consensus 77 ~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~g-------v-~~ir~l~~~~~~~p~~~~~kv~iidE~hmls~~----- 143 (507)
T PRK06645 77 TTIKTCEKCTNCISFNNHNHPDIIEIDAASKTS-------V-DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG----- 143 (507)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCC-------H-HHHHHHHHHCCCCCCCCCEEEEEECCHHHCCHH-----
T ss_conf 988888887678998658999859963788888-------8-999999863551787674358995214224899-----
Q ss_pred CCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 4432102568988753105870
Q gi|254780271|r 199 ITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 199 ~~~dvs~~gvq~~LLkileg~~ 220 (424)
.|++|||.||..-
T Consensus 144 ---------a~nallktlEepp 156 (507)
T PRK06645 144 ---------AFNALLKTLEEPP 156 (507)
T ss_pred ---------HHHHHHHHHHCCC
T ss_conf ---------9999999742786
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=1.6e-09 Score=87.29 Aligned_cols=112 Identities=30% Similarity=0.491 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHHH-HHHH
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853-------131012-2111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMADA-TTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vda-T~~T 150 (424)
||||+...+++.-|+.+- |+ ..-+||.||.|||||-+||-|||.||-. --.++. ....
T Consensus 18 ~vGQ~~v~~~L~nal~~~--rl------------~haylf~G~rGvGKTt~Ari~Ak~lNC~~~~~~~pCg~C~~C~~i~ 83 (704)
T PRK08691 18 LVGQEHVVKALQNALDEG--RL------------HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (704)
T ss_pred HCCCHHHHHHHHHHHHHC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 418699999999999819--97------------5237502789878889999999996799999999787777678785
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+-.++ -.-|+. +|.|++...+.--...+.|..|||+..++.. .+|+|||.||..
T Consensus 84 ~g~~~D~~EiDaAs~~~vdd-~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~~--------------afNAlLKtLEEP 146 (704)
T PRK08691 84 AGRYVDLLEIDAASNTGIDN-IREVLENAQYAPTAGKYKVYIIDEVHMLSKS--------------AFNAMLKTLEEP 146 (704)
T ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHHHHCCC
T ss_conf 58998747742454458899-9999985346886785359998315443899--------------999999861479
No 76
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.09 E-value=1.7e-09 Score=87.02 Aligned_cols=170 Identities=25% Similarity=0.355 Sum_probs=111.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 68358840733217699999998718531310122111111035563303577887654227765422333223332002
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISR 192 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~ 192 (424)
-++.+|-||.|||||-||+-||+..+.+|....|+..+-. -++.-++.+........+-|+|+|||-...+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvk---------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVK---------DLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHH---------HHHHHHHHHHHHHHCCCCEEEEEEHHHHCCH
T ss_conf 8605777899988889999998761776699515234679---------9999999999987258834998722533374
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33333344321025689887531058701025655643222430243100012322000467898876412343332111
Q gi|254780271|r 193 KSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSA 272 (424)
Q Consensus 193 ~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~ 272 (424)
. -|+.||..+|.+.+.+ +--.|.|=.|..
T Consensus 119 ~--------------QQD~lLp~vE~G~iil-------------IGATTENPsF~l------------------------ 147 (436)
T COG2256 119 A--------------QQDALLPHVENGTIIL-------------IGATTENPSFEL------------------------ 147 (436)
T ss_pred H--------------HHHHHHHHHCCCEEEE-------------EECCCCCCCEEE------------------------
T ss_conf 4--------------5655103324886899-------------962678987140------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 10000000168999641056777522068987207842672111057899998742677999999998744989999689
Q gi|254780271|r 273 VVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHED 352 (424)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~Ftde 352 (424)
-|-+..|-. +-+|+||+.+|+.++|.. ++..- -....+..++++++
T Consensus 148 ---------------------------n~ALlSR~~-vf~lk~L~~~di~~~l~r---a~~~~---~rgl~~~~~~i~~~ 193 (436)
T COG2256 148 ---------------------------NPALLSRAR-VFELKPLSSEDIKKLLKR---ALLDE---ERGLGGQIIVLDEE 193 (436)
T ss_pred ---------------------------CHHHHHHHH-EEEEECCCHHHHHHHHHH---HHHHH---HCCCCCCCCCCCHH
T ss_conf ---------------------------388861104-156516998999999999---98654---13777655668889
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999955106787423689999996
Q gi|254780271|r 353 ALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 353 Ai~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
|++.|+..+- =-||++-+.+|-+.
T Consensus 194 a~~~l~~~s~---GD~R~aLN~LE~~~ 217 (436)
T COG2256 194 ALDYLVRLSN---GDARRALNLLELAA 217 (436)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHH
T ss_conf 9999998628---61999988999999
No 77
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.08 E-value=2.1e-09 Score=86.42 Aligned_cols=211 Identities=18% Similarity=0.281 Sum_probs=132.7
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH-
Q ss_conf 203085999999999998658875212101355225683588407332176999999987---1853131012211111-
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA- 152 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~- 152 (424)
..|||+..|-+.+- ..-+|+. -..+.+|+.|.||+||..+||.+-.. .+.||+.++|..+.+.
T Consensus 204 ~~iig~S~~m~~v~----~~a~r~A---------~~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l 270 (513)
T PRK10820 204 SQIVAVSPKMKHVV----EQARKLA---------MLSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDA 270 (513)
T ss_pred HHHEECCHHHHHHH----HHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH
T ss_conf 77510899999999----9999985---------9899889989898249999999996688789982688899899678
Q ss_pred ------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf ------10355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 153 ------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 153 ------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
||..+ ...+..+.|..|.+|+|||+.+... .|..||++++..... +-
T Consensus 271 ~eseLFG~a~~-----------~~~G~fe~A~gGTLfLdEI~~l~~~--------------~Q~kLLr~Lq~~~~~--rv 323 (513)
T PRK10820 271 VESELFGHAPE-----------GKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFR--RV 323 (513)
T ss_pred HHHHHCCCCCC-----------CCCCCEEECCCCEEEEECHHHCCHH--------------HHHHHHHHHHCCEEE--EC
T ss_conf 99986387666-----------8897557858988999783659999--------------999999998689799--65
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
|+.+...-+...|-++|. .+.+ +..++ .|...|--|
T Consensus 324 G~~~~~~~dvRiIaaT~~---------dL~~---------------------------lv~~g--------~FReDLyyR 359 (513)
T PRK10820 324 GEDHEVHVDVRVICATQK---------NLVE---------------------------LVQKG--------LFREDLYYR 359 (513)
T ss_pred CCCCEEEEEEEEEECCCH---------HHHH---------------------------HHHCC--------CCCHHHHHH
T ss_conf 998535677899962653---------0999---------------------------98729--------850889998
Q ss_pred CCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 7842-67211105--7899998742677999999998744989-9996899999999551067874236899999967
Q gi|254780271|r 307 LPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDVE-LVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 307 lPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV~-L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|-+. +.+-||-+ +|+.-+. ..++.+|...+ |.. ..||++|++.+....|--| .|-|+.++|+.+.
T Consensus 360 L~v~~I~lPpLReR~eDI~~L~----~~fl~~~~~~~---g~~~~~ls~~a~~~L~~y~WPGN--VREL~n~iera~~ 428 (513)
T PRK10820 360 LNVLTLNLPPLRDCPQDIMPLT----ELFVARFADEQ---GVPRPKLSADLSTVLTRYGWPGN--VRQLKNAIYRALT 428 (513)
T ss_pred HHCCCCCCCCHHHCHHHHHHHH----HHHHHHHHHHC---CCCCCCCCHHHHHHHHHCCCCCH--HHHHHHHHHHHHH
T ss_conf 6167255888344655699999----99999999975---99989847999999970899979--9999999999999
No 78
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.07 E-value=8.5e-11 Score=96.15 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=72.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3588407332176999999987185313101221111-110355633035778876542277654223332233320023
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE-AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRK 193 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE-~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~ 193 (424)
||||.||+|||||.+|+.||+.++.||..+.+|.-|+ ..++|..+-..-.....-..+.+ -.+++++|||..+.+.
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~l---~~~vl~lDEin~a~~~ 77 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGPI---FANVLLADEINRAPPK 77 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCC---CCCCEEEEHHHCCCHH
T ss_conf 9878989987699999999999599816888337767000368454237874089845731---0370564012039989
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHH
Q ss_conf 333334432102568988753105870102565564322243024310001
Q gi|254780271|r 194 SDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNI 244 (424)
Q Consensus 194 ~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~ni 244 (424)
||++||..++...+.+.. ....-...+..|-|+|=
T Consensus 78 --------------v~~~Ll~~l~er~v~~~g--~~~~~p~~f~viAt~NP 112 (131)
T pfam07726 78 --------------TQSALLEAMQERQVTIGG--ETHPLPEPFFVLATQNP 112 (131)
T ss_pred --------------HHHHHHHHHHCEEEEECC--EEEECCCCEEEEECCCC
T ss_conf --------------999999763264997799--88527998499971698
No 79
>KOG0733 consensus
Probab=99.06 E-value=4.9e-10 Score=90.84 Aligned_cols=130 Identities=27% Similarity=0.430 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCC
Q ss_conf 08599999999999865887521210135522568358840733217699999998718531310122111111035563
Q gi|254780271|r 80 IGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV 159 (424)
Q Consensus 80 IGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dv 159 (424)
=|+++-+.-+-.|+---.||- ...+..... .|+-|||-||.|||||+|||+.|.-.++.|+-|---.+.- -|||+.
T Consensus 514 GaL~~vR~eL~~aI~~PiK~p-d~~k~lGi~-~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-kYVGES- 589 (802)
T KOG0733 514 GALEEVRLELNMAILAPIKRP-DLFKALGID-APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-KYVGES- 589 (802)
T ss_pred CCHHHHHHHHHHHHHHHCCCH-HHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHH-HHHHHH-
T ss_conf 249999999999986002388-899982888-9872387579986188999998503047547623889998-774237-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 3035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 160 ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 160 esii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
|--+|.+.+.|-. ..-++||+||+|-+.++..... .-++..|.|.||-.|+|..
T Consensus 590 ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733 590 ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred HHHHHHHHHHHHC----CCCEEEEECCHHHCCCCCCCCC---CHHHHHHHHHHHHHHCCCC
T ss_conf 8999999998623----8983898511120276557777---5058999999998731621
No 80
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.06 E-value=2.3e-09 Score=86.20 Aligned_cols=198 Identities=19% Similarity=0.329 Sum_probs=126.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---1853131012211111----10355633035778876542277654223332
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~i 184 (424)
...+||+.|+||+||..+||.+-.. .+.||+.++|..+.+. -.-|..-+.- ..-.....+..+.|..|.+|+
T Consensus 165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaf-tga~~~~~G~~e~A~gGTLfL 243 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAF-TGAQTLRQGLFERANEGTLLL 243 (457)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHCCCCCEEC
T ss_conf 8995899889985789999999983798899838764787985778999718766787-885314698613359982631
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 23332002333333443210256898875310587010256556432224302431000123220004678988764123
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGE 264 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~ 264 (424)
|||+.+... .|..||+.++.... .+-|+.+....+...|-++|. .+
T Consensus 244 deI~~l~~~--------------~Q~kLLr~L~~~~~--~~~g~~~~~~~dvRiIaaT~~---------~L--------- 289 (457)
T PRK11361 244 DEIGEMPLV--------------LQAKLLRILQEREF--ERIGGHQTIKVDIRIIAATNR---------DL--------- 289 (457)
T ss_pred CCHHHHHHH--------------HHHHHHHHHHCCCE--EECCCCCEEEECCEEEECCCC---------CH---------
T ss_conf 466452399--------------99999999864927--856997136653489965787---------85---------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHCCCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 433321111000000016899964105677752-2068987207842-67211105--7899998742677999999998
Q gi|254780271|r 265 KASIGFSAVVKDSDNRPVGEVLRNLESEDLVKF-GLIPEFIGRLPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~-gliPEl~GRlPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
.+++.. .|.+.|--||.+. +.+-||.+ +|+-.+. ..++.+|..-+
T Consensus 290 ---------------------------~~~v~~g~Fr~DLyyrL~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~~~ 338 (457)
T PRK11361 290 ---------------------------QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLA----NHFLQKFSSEN 338 (457)
T ss_pred ---------------------------HHHHHCCCCHHHHHHHHCEEEEECCCHHHCHHHHHHHH----HHHHHHHHHHC
T ss_conf ---------------------------99987583238899530221251738545875499999----99999999974
Q ss_pred HHCCCE-EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 744989-9996899999999551067874236899999967
Q gi|254780271|r 341 DMEDVE-LVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 341 ~~egV~-L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
|.. ..|+++|++.+....|--|+ |-|+.++|+.+.
T Consensus 339 ---~~~~~~~s~~a~~~L~~y~WPGNv--REL~n~ierav~ 374 (457)
T PRK11361 339 ---QRDIIDIDPMAMSLLTAWSWPGNI--RELSNVIERAVV 374 (457)
T ss_pred ---CCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHHH
T ss_conf ---999898899999999569999799--999999999998
No 81
>KOG2028 consensus
Probab=99.04 E-value=2e-09 Score=86.49 Aligned_cols=227 Identities=25% Similarity=0.308 Sum_probs=120.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEHHHHHH
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871853---131012211
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP---FTMADATTL 149 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P---F~~vdaT~~ 149 (424)
..||.|| ||+++.-. .--+|+-... . .| || ++|-||.|||||-|||-||.-..-+ |+-.-||+-
T Consensus 135 ktL~dyv-GQ~hlv~q-~gllrs~ieq-------~--~i-pS-mIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028 135 KTLDDYV-GQSHLVGQ-DGLLRSLIEQ-------N--RI-PS-MILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred CHHHHHC-CHHHHCCC-CHHHHHHHHC-------C--CC-CC-EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 3687750-53441483-2689999870-------8--88-70-5886699876588999998605777427999741456
Q ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 1111035563303577887654-227765422333223332002333333443210256898875310587010256556
Q gi|254780271|r 150 TEAGYVGEDVENIILKLLQAAD-YNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGG 228 (424)
Q Consensus 150 TE~GYvG~Dvesii~~L~~~a~-~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~g 228 (424)
+- +-+|+.++.+. ....-..+.|+|+|||-.-.+. -|..+|..+|.+.+.+-.
T Consensus 202 ~t---------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~VE~G~I~lIG--- 255 (554)
T KOG2028 202 KT---------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHVENGDITLIG--- 255 (554)
T ss_pred CH---------HHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHH--------------HHHCCCCEECCCCEEEEE---
T ss_conf 61---------8899999998878765244069873776553232--------------110034213067069985---
Q ss_pred CCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC
Q ss_conf 43222430243100012322000467898876412343332111100000001689996410567775220689872078
Q gi|254780271|r 229 RKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP 308 (424)
Q Consensus 229 rk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP 308 (424)
-.|.|- .|.+..-|+.|-+
T Consensus 256 ----------ATTENP---------------------------------------------------SFqln~aLlSRC~ 274 (554)
T KOG2028 256 ----------ATTENP---------------------------------------------------SFQLNAALLSRCR 274 (554)
T ss_pred ----------CCCCCC---------------------------------------------------CCCHHHHHHHCCC
T ss_conf ----------366897---------------------------------------------------6011277873160
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 42672111057899998742677999999998744989999689999999955106787423689999996777402767
Q gi|254780271|r 309 VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPM 388 (424)
Q Consensus 309 iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~ 388 (424)
|. +|++|..+.+..||.---++|.+--.---.+.+-.....+.+|+.+|...- =-||+--..+|-.+. ||-.-+
T Consensus 275 Vf-vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd---GDaR~aLN~Lems~~--m~~tr~ 348 (554)
T KOG2028 275 VF-VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD---GDARAALNALEMSLS--MFCTRS 348 (554)
T ss_pred EE-EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH--HHHHHC
T ss_conf 66-733688899999999998763210256889998312456889999987047---318888778999999--887524
Q ss_pred CCCCCEEEECHHHHCCCC
Q ss_conf 898419998377855878
Q gi|254780271|r 389 LKGVSSVIISDDVVKGKA 406 (424)
Q Consensus 389 ~~~~~~v~Id~~~V~~~~ 406 (424)
.+. ..+.+.-+-|++.+
T Consensus 349 g~~-~~~~lSidDvke~l 365 (554)
T KOG2028 349 GQS-SRVLLSIDDVKEGL 365 (554)
T ss_pred CCC-CCCEECHHHHHHHH
T ss_conf 776-56400288899998
No 82
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1e-09 Score=88.54 Aligned_cols=129 Identities=31% Similarity=0.439 Sum_probs=97.7
Q ss_pred HCCCHHHHHHHHHHHH---H--HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
Q ss_conf 0308599999999999---8--6588752121013552256835884073321769999999871853131012211111
Q gi|254780271|r 78 YVIGQGQAKKVLAVAV---H--NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA 152 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv---~--nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~ 152 (424)
-|-|.|+||--++--| . ++|.++ .. -.|+-+||+||-|+|||+|||+.|--+++||--.--+.|-|-
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~l-------Ga-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQAL-------GA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCHHHHHC-------CC-CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCEECCCHHHHHH
T ss_conf 6418679999999999986385566752-------35-345652685599987278999984546898353034446443
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 10355633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 153 GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 153 GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
|||-- -+.+|+|...+..+ ..+|||+||||.+.+.......+...-.|-..|-||..|||-.
T Consensus 223 -fVGvG-AsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 223 -FVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred -HCCCC-CHHHHHHHHHHHCC----CCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf -14788-38889999985515----9966987634331454577889980699999988885201578
No 83
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=3e-09 Score=85.28 Aligned_cols=112 Identities=30% Similarity=0.475 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHH-HHHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------313101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vd-aT~~T 150 (424)
||||+...+++.-|+.+. |+ ..-+||.||-|||||-+||-|||.||. |--.++ |....
T Consensus 18 ~vGQ~~v~~~L~nal~~~--rl------------~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~ 83 (717)
T PRK08853 18 VVGQSHVLTALENALAHN--RL------------HHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEID 83 (717)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 138599999999999709--97------------4057610889888989999999986789999999788870267674
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+-.++ ...|+. +|+|++...|.--+..+.|-+|||+..++.. .+|+|||.||..
T Consensus 84 ~g~~~d~~EiDaAs~~~vdd-~rel~~~~~y~p~~~~yKvyiiDEvHmls~~--------------afnAlLKtlEEP 146 (717)
T PRK08853 84 EGRFVDLLEIDAASRTKVED-TRELLDNVQYKPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEP 146 (717)
T ss_pred CCCCCCEEEECCCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHHHHCCC
T ss_conf 47877524540565678899-9999985554887785479998305443899--------------999998760378
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=4.8e-09 Score=83.93 Aligned_cols=112 Identities=30% Similarity=0.445 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCE-------EEHH-HHHHH
Q ss_conf 308599999999999865887521210135522568358840733217699999998718531-------3101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPF-------TMAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF-------~~vd-aT~~T 150 (424)
||||+...+++.-|+.+. |+ ..-.||.||-|||||-+||-|||-+|..- -.++ |....
T Consensus 18 ~vGQ~~v~~~l~na~~~~--r~------------~haylf~G~rG~GKtt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~ 83 (643)
T PRK07994 18 VVGQEHVLTALANGLSLG--RI------------HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (643)
T ss_pred HCCCHHHHHHHHHHHHHC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 538799999999999829--86------------6348745899888889999999996799999999787677689886
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 11103---------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+-.++ ...|+. +|+|++...|.--...+.|..|||+..++.. .+|+|||.||..
T Consensus 84 ~g~~~d~~eidaas~~~vd~-~rel~~~~~y~p~~~r~kvyiidEvhmls~~--------------afnalLKtlEeP 146 (643)
T PRK07994 84 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEP 146 (643)
T ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHHHHCCC
T ss_conf 58988758863677788899-9999984466887785369997221015899--------------999999862378
No 85
>pfam00493 MCM MCM2/3/5 family.
Probab=98.99 E-value=3.4e-09 Score=84.97 Aligned_cols=245 Identities=20% Similarity=0.287 Sum_probs=143.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-CCEEEHHHHH
Q ss_conf 999997420308599999999999865887521210135522568358840733217699999998718-5313101221
Q gi|254780271|r 70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID-VPFTMADATT 148 (424)
Q Consensus 70 eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~-~PF~~vdaT~ 148 (424)
-+.+.+--.|.|.+..|++++.++.....+........+-+ .||||+|-.|+|||.|.|..+++.. .-|+ ..+.
T Consensus 17 ~l~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~---ihiLLvGdPG~gKSqlLk~~~~~~pr~~~t--sg~~ 91 (327)
T pfam00493 17 KLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGD---INVLLVGDPGTAKSQLLKYVAKLAPRAVYT--SGKG 91 (327)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CEEEEECCCCCCHHHHHHHHHHHCCCCEEE--CCCC
T ss_conf 99998597124987999999999808987658888620365---118984699815609999999868870883--1776
Q ss_pred HHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 111110355---63303577887654227765422333223332002333333443210256898875310587010256
Q gi|254780271|r 149 LTEAGYVGE---DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPP 225 (424)
Q Consensus 149 ~TE~GYvG~---Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~ 225 (424)
-|.+|..+. |..+--. -++ .+.+=.|-.|+.++||+||+.+. .|.+|+..||...+++..
T Consensus 92 ss~~GLTa~~~~d~~~~~~-~le--aGalvlAd~Gv~cIDEfdk~~~~--------------d~saL~EAMEqqtVsIaK 154 (327)
T pfam00493 92 SSAAGLTAAVVRDPDTGEW-TLE--AGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAK 154 (327)
T ss_pred CCCCCCEEEEEEECCCCCE-EEE--CCCEEECCCCEEEEECCCCCCHH--------------HHHHHHHHHHHCEEEEEC
T ss_conf 6567761589980688836-983--68477558982785005558876--------------799999999868177633
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 55643222430243100012322000467898876412343332111100000001689996410567775220689872
Q gi|254780271|r 226 QGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIG 305 (424)
Q Consensus 226 ~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~G 305 (424)
.|-.......+..+-+.|-. .|.|+. . .. +. ...+|-|-++-
T Consensus 155 aGi~~tL~ar~sVlAaaNP~---~g~yd~------------------~------~~---~~--------~ni~Lp~~lLs 196 (327)
T pfam00493 155 AGIVATLNARCSVLAAANPI---FGRYDP------------------K------KS---VA--------ENINLPPPLLS 196 (327)
T ss_pred CCEEEEECCCCEEEEEECCC---CCCCCC------------------C------CC---HH--------HHCCCCHHHHC
T ss_conf 85389725871799852776---773788------------------8------89---88--------85589767745
Q ss_pred CCCCEEEECC-CCHHH----HHHHHHHH--------------HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH---
Q ss_conf 0784267211-10578----99998742--------------67799999999874498999968999999995510---
Q gi|254780271|r 306 RLPVLATLED-LDENS----LIRILSEP--------------KNALIKQYQCLFDMEDVELVFHEDALREIARCAIA--- 363 (424)
Q Consensus 306 RlPiiV~L~~-Lt~ed----l~rILtep--------------knsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~--- 363 (424)
||+.+..+.. -+++. ...|+..- .-.+++.|.++-+ +.+.-.+|++|.+.|.+.-.+
T Consensus 197 RFDLif~l~D~~~~~~D~~ia~~i~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar-~~~~P~ls~ea~~~i~~~y~~~R~ 275 (327)
T pfam00493 197 RFDLIFVLLDKPDEEKDEELAKHIVDLHRHGEEEEIETEDYVDPELLRKYIAYAR-ENIFPKLSDEAREKLVNYYVELRK 275 (327)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 0107988406898688999999999987446886555688799999999999998-527887798999999999999986
Q ss_pred ---C-----CCCCHHHHHHH
Q ss_conf ---6-----78742368999
Q gi|254780271|r 364 ---H-----KTGARGLRSIL 375 (424)
Q Consensus 364 ---~-----niGAR~LrtIi 375 (424)
. .+.+|.|-+++
T Consensus 276 ~~~~~~~~~~iT~R~lesLi 295 (327)
T pfam00493 276 ESEASGSSIPITVRQLESLI 295 (327)
T ss_pred HCCCCCCCCCCCHHHHHHHH
T ss_conf 42436887472389999999
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=7.2e-09 Score=82.67 Aligned_cols=126 Identities=23% Similarity=0.299 Sum_probs=78.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC------EEEHHHHHHHH
Q ss_conf 030859999999999986588752121013552256835884073321769999999871853------13101221111
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP------FTMADATTLTE 151 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P------F~~vdaT~~TE 151 (424)
-||||+++++++--|+++-.-..+....... . ...-.||.||.|+|||.+|+.+|+.++-+ =-.+..-.-.+
T Consensus 6 ~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~-~-~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~~~cg~C~~C~~i~ 83 (395)
T PRK07940 6 RLVGQDAVVAELRAAARAARADSAHSAAAGS-G-MTHAWLFTGPPGSGRSNAARAFAAALQCTDPGVPGCGECRACRTVL 83 (395)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-C-CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 3159299999999999836343443333468-7-6603763689987889999999999669999999998787899987
Q ss_pred HHH------CCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 110------3556330----3577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 152 AGY------VGEDVEN----IILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 152 ~GY------vG~Dves----ii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|- +-.+--+ -||+|.+.....--...+.|+.||+.|+... ..+|+|||.+|..
T Consensus 84 ~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~--------------~a~NalLKtLEEP 147 (395)
T PRK07940 84 AGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP 147 (395)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCH--------------HHHHHHHHHHCCC
T ss_conf 689987189826877688999999999985273037955999807787489--------------9999999852178
No 87
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.95 E-value=6.9e-09 Score=82.82 Aligned_cols=113 Identities=30% Similarity=0.455 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHH-HHHHH
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853-------13101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vd-aT~~T 150 (424)
||||+...+++..|+.+. |+ ..-+||.||-|||||-+||-|||.||.- --.++ |....
T Consensus 18 ~~gq~~~~~~l~~~~~~~--~~------------~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~ 83 (705)
T PRK05648 18 MVGQTHVLKALINALDNQ--RL------------HHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREID 83 (705)
T ss_pred HCCHHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 328199999999999709--86------------3046500789888989999999986778999889787760046662
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 11103---------55633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
+-.|+ -..||. +|+|+++..|.--...+.|-+|||+.-++.. .+|+|||-||..-
T Consensus 84 ~~~~~d~~e~d~as~~~v~~-~r~~~~~~~~~p~~~~~kv~~idevhmls~~--------------~fnallktleepp 147 (705)
T PRK05648 84 EGRFVDLIEVDAASRTKVED-TRELLDNVQYAPTRGRYKVYLIDEVHMLSSH--------------SFNALLKTLEEPP 147 (705)
T ss_pred CCCCCCEEEECCCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEEHHHHCCHH--------------HHHHHHHHCCCCC
T ss_conf 48977634451554478899-9999985551776774579998426541799--------------9999987404797
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=9.9e-09 Score=81.71 Aligned_cols=59 Identities=32% Similarity=0.440 Sum_probs=46.5
Q ss_pred HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 002699878999997420308599999999999865887521210135522568358840733217699999998718
Q gi|254780271|r 61 SHEGIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 61 ~~~~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.....|-|++-. .||||++|++.+.-|+.+- | .+.-+||.||.|+|||-+|+++|+.+.
T Consensus 6 ~~~~~p~P~~~~-----~liGqe~~~~~L~~a~~~g--r------------l~HA~Lf~Gp~GiGK~tlA~~~A~~ll 64 (363)
T PRK07471 6 LPEADPHPRETT-----ALFGHAAAEAALLDAYRSG--R------------LHHAWLIGGPQGIGKATLAYRMARFLL 64 (363)
T ss_pred CCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 689995999827-----3168199999999999859--9------------764587679998188999999999985
No 89
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=1.1e-08 Score=81.28 Aligned_cols=113 Identities=26% Similarity=0.467 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHH-HHHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------313101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vd-aT~~T 150 (424)
+|||+...++++.|+.+- |+ ..-+||.|+-|||||-+||-|||.||. |--.++ |....
T Consensus 18 ~~gq~~~~~~l~~~~~~~--~~------------~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~ 83 (663)
T PRK08770 18 LVGQEHVVRALSNALDSG--RV------------HHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDID 83 (663)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 228599999999999709--97------------4047622799888889999999986789999999787787789885
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 11103---------55633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
+-.|+ -..||. +|+|+++..|.--+..+.|-.|||+.-++.. .+|+|||-||..-
T Consensus 84 ~~~~~d~~e~daas~~~v~~-~r~~~~~~~~~p~~~~~kvy~idevhmls~~--------------~fna~lktleepp 147 (663)
T PRK08770 84 AGRYIDLLEIDAASNTGVDD-VREVIENAQYMPSRGKFKVYLIDEVHMLSKA--------------AFNALLKTLEEPP 147 (663)
T ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHCCHH--------------HHHHHHHHHCCCC
T ss_conf 48988658864676588899-9999984435887774369997004332899--------------9999987402786
No 90
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.4e-08 Score=80.68 Aligned_cols=112 Identities=27% Similarity=0.448 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-----C-------EEEHH-
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-----3-------13101-
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-----P-------FTMAD- 145 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-----P-------F~~vd- 145 (424)
||||+...+++..|+.+- |+ ..-+||.||-|||||-+||-|||.||. . --.++
T Consensus 18 ~vGQ~~v~~~l~na~~~~--r~------------~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~ 83 (721)
T PRK12323 18 LVGQEHVVRALTHALEQQ--RL------------HHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA 83 (721)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 328599999999999719--97------------5447502799888989999999997689986678987887877654
Q ss_pred HHHHHHHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2211111103---------5563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 146 ATTLTEAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 146 aT~~TE~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
|...++-.++ -.-||. +|+|++...|.--...+.|-.|||+.-++.. .+|+|||-|
T Consensus 84 C~~i~~g~~~d~~EiDaas~~~v~~-~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--------------afnalLKtl 148 (721)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDE-MAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--------------AFNAMLKTL 148 (721)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHH
T ss_conf 6877568987647743676788899-9999985455887664469998540005899--------------999999840
Q ss_pred CCC
Q ss_conf 587
Q gi|254780271|r 217 EGT 219 (424)
Q Consensus 217 eg~ 219 (424)
|..
T Consensus 149 EeP 151 (721)
T PRK12323 149 EEP 151 (721)
T ss_pred CCC
T ss_conf 179
No 91
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.93 E-value=6.5e-09 Score=82.98 Aligned_cols=227 Identities=22% Similarity=0.298 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---------
Q ss_conf 87899999742030859999999999986588752121013552256835884073321769999999871---------
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--------- 137 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--------- 137 (424)
.|+.-.+ ||||++=-|||==||+ .+ -|-.+++-||-|||||==||=.=+.+
T Consensus 60 RP~SF~E-----IiGQe~GI~ALKAALC--------GP-------NPQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFk 119 (532)
T TIGR02902 60 RPKSFDE-----IIGQEEGIKALKAALC--------GP-------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (532)
T ss_pred CCCCCCC-----CCCCHHHHHHHHHHCC--------CC-------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7776332-----5673556899998606--------86-------89638987886961789999999986508753789
Q ss_pred -CCCEEEHHHHH--HHHHHHCCCCCCCHHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -85313101221--11111035563303577--------8876-----54227765422333223332002333333443
Q gi|254780271|r 138 -DVPFTMADATT--LTEAGYVGEDVENIILK--------LLQA-----ADYNVERAQRGIVYIDEVDKISRKSDNPSITR 201 (424)
Q Consensus 138 -~~PF~~vdaT~--~TE~GYvG~Dvesii~~--------L~~~-----a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~ 201 (424)
+|-|+-+|||+ |-|-|-.--=.+|+ +| |..| -.+.|-+|.-||+|||||=.+|+.
T Consensus 120 e~A~FVEiDATT~RFDERGIADPLIGSV-HDPIYQGAGplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~-------- 190 (532)
T TIGR02902 120 EEAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPV-------- 190 (532)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHH--------
T ss_conf 8866898505103602146666567761-5853337654578855758777632025865512124665824--------
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 21025689887531058701025655643222430243100012322000467898876412343332111100000001
Q gi|254780271|r 202 DVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRP 281 (424)
Q Consensus 202 dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 281 (424)
-+|-|||+||+..+-+....-.. ..+.+. ++|
T Consensus 191 ------~MNKLLKVLEDRKVFLdSAYY~s--~~pniP---~hI------------------------------------- 222 (532)
T TIGR02902 191 ------QMNKLLKVLEDRKVFLDSAYYSS--EDPNIP---SHI------------------------------------- 222 (532)
T ss_pred ------HHHHHHHHHHCCCCHHHCCCCCC--CCCCCC---HHH-------------------------------------
T ss_conf ------35314113302220000123587--778654---278-------------------------------------
Q ss_pred HHHHHHHHHHHHH--------HHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 6899964105677--------75220689872078426721110578999987426779999999987449899996899
Q gi|254780271|r 282 VGEVLRNLESEDL--------VKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDA 353 (424)
Q Consensus 282 ~~~~~~~~~~~DL--------~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeA 353 (424)
.++|..+-|.|. .|-=+-|=|.-|= +=+-|.+|..|++..|= -=+.|.|.+...++|
T Consensus 223 -~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC-~EIFFR~L~~EEi~~iA-------------k~AaeKIg~~l~~~A 287 (532)
T TIGR02902 223 -RDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLKEEIKEIA-------------KNAAEKIGLNLEKEA 287 (532)
T ss_pred -HHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCC-EEEEECCCCHHHHHHHH-------------HHHHHHCCCCCCHHH
T ss_conf -997206787340121333698776783465052-26771688878999998-------------765653046547547
Q ss_pred HHHHHHHHHH---------------CCCCCHHH-HHHHHHHHHHHHHC
Q ss_conf 9999995510---------------67874236-89999996777402
Q gi|254780271|r 354 LREIARCAIA---------------HKTGARGL-RSILEKILLDTMFE 385 (424)
Q Consensus 354 i~~IA~~A~~---------------~niGAR~L-rtIiE~iLedimFe 385 (424)
++-|+..|.. -|.|=|+. ++=+|=+.+.=.|.
T Consensus 288 l~~I~~Ya~nGREAvN~~QLAaG~a~~E~Rk~I~~~DieWV~~~G~y~ 335 (532)
T TIGR02902 288 LDLIAKYASNGREAVNLVQLAAGIALGENRKRILAEDIEWVIESGNYH 335 (532)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHEECCCCCEECHHHHHHHHHHCCCC
T ss_conf 999998740540677899997314012887612054644555304787
No 92
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.3e-08 Score=80.88 Aligned_cols=113 Identities=28% Similarity=0.447 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHH-HHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------3131012-2111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADA-TTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vda-T~~T 150 (424)
+|||+...++++-|+-+- |+ ..-+||.||-|||||-+||-|||.||. |--.++. ....
T Consensus 18 ~vgq~~v~~~l~~a~~~~--r~------------~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~ 83 (696)
T PRK06872 18 VVGQEHILTALSNGLKEN--RL------------HHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIE 83 (696)
T ss_pred HCCCHHHHHHHHHHHHCC--CC------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 238599999999999719--86------------3047511789888889999999986789999999788862257674
Q ss_pred HHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 11103---------55633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 151 EAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 151 E~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
+-.++ -..|+. +|.|+++..|.--+..+.|-.|||+.-++.. -+|+|||-||..-
T Consensus 84 ~g~~~d~~eidaas~~~v~~-~r~l~~~~~~~p~~~~~kvy~idevhmls~~--------------~fnallktleepp 147 (696)
T PRK06872 84 EGNFIDLIEIDAASRTKVED-TRELLDNVQYKPVVGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEPP 147 (696)
T ss_pred CCCCCCEEEEECCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEEHHHHCCHH--------------HHHHHHHHHCCCC
T ss_conf 47877546750565578899-9999984545776775479997005443899--------------9999987502797
No 93
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.91 E-value=7.8e-08 Score=75.42 Aligned_cols=211 Identities=20% Similarity=0.256 Sum_probs=117.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHH
Q ss_conf 2030859999999999986588752121013552256835884073321769999999871-----85313101221111
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTE 151 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE 151 (424)
..++|-++--+.++-++....+. -.|.|++..||||+|||..+|.+.+-+ ++-|+-++|..+.-
T Consensus 30 ~~l~~Re~Ei~~l~~~l~~~l~g-----------~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t 98 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG-----------SRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCC-----------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 98988599999999999999759-----------9998479988999989999999999999746896599996966898
Q ss_pred H---------HHCCCCCCCH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 1---------1035563303---5778876542277-6542233322333200233333344321025689887531058
Q gi|254780271|r 152 A---------GYVGEDVENI---ILKLLQAADYNVE-RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 152 ~---------GYvG~Dvesi---i~~L~~~a~~~v~-~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
. ..-|.++.+- ..+++........ ....-+|.+||+|.+.... +..+...|++.-+.
T Consensus 99 ~~~i~~~i~~~L~~~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~----------~~~vLY~L~r~~~~ 168 (394)
T PRK00411 99 RYAILSEIARSLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC----------CCHHHHHHHHCCCC
T ss_conf 99999999999569989877878999999999986166975899996554020366----------50899999854022
Q ss_pred CEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 70102565564322243024310001232200046789887641234333211110000000168999641056777522
Q gi|254780271|r 219 TIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFG 298 (424)
Q Consensus 219 ~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~g 298 (424)
++......|-.+|-+ ++. .-
T Consensus 169 ------------~~~~~~~vI~IsN~~--------------------------------------~~~----------~~ 188 (394)
T PRK00411 169 ------------YPGARIGVIGISSDL--------------------------------------TFL----------YI 188 (394)
T ss_pred ------------CCCCCEEEEEEECCC--------------------------------------CHH----------HH
T ss_conf ------------688738999997687--------------------------------------177----------66
Q ss_pred HHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 068987207-8426721110578999987426779999999987449899996899999999551067874236899999
Q gi|254780271|r 299 LIPEFIGRL-PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK 377 (424)
Q Consensus 299 liPEl~GRl-PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~ 377 (424)
|-|-.+.|| |..+.|.|-+.++++.||..-- ..-| .+| .|+++|++.+|+.+....=-||+=-.++-+
T Consensus 189 Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~-------~~af-~~g---v~~~~~i~~~A~~~a~~~GDaR~Aldllr~ 257 (394)
T PRK00411 189 LDPRVKSVFGPEEIVFPPYTADEIFDILKDRV-------EEGF-YPG---VVSDEVLELIADLTGREHGDARVAIDLLRR 257 (394)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH-------HHCC-CCC---CCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 40777502786289858999899999999999-------8414-556---789789999999985504758999999999
Q ss_pred HH
Q ss_conf 96
Q gi|254780271|r 378 IL 379 (424)
Q Consensus 378 iL 379 (424)
..
T Consensus 258 A~ 259 (394)
T PRK00411 258 AG 259 (394)
T ss_pred HH
T ss_conf 99
No 94
>KOG0728 consensus
Probab=98.86 E-value=1.3e-08 Score=80.93 Aligned_cols=194 Identities=24% Similarity=0.392 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 87899999742030859999999999986588752121--0135522568358840733217699999998718531310
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSS--KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~--~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
+.-+.+.-||+.| .+-|.++-.-+ +++. +... --.|+-+||-||.|.|||+|||+.|-..+.-|++|
T Consensus 144 StYeMiGgLd~QI---keIkEVIeLPv-------KHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firv 212 (404)
T KOG0728 144 STYEMIGGLDKQI---KEIKEVIELPV-------KHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 212 (404)
T ss_pred CHHHHHCCHHHHH---HHHHHHHHCCC-------CCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEE
T ss_conf 0888750388899---99999982656-------6878998518-78876048846999756299999875414079996
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCEE
Q ss_conf 1221111110355633035778876542277654223332233320023333334432102568988753105---8701
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME---GTIA 221 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile---g~~~ 221 (424)
--+.+.+ .|+|+- .-|++.|.-. .+....+|||.||||-|.......+.+ +...||..+|.++. |-..
T Consensus 213 sgselvq-k~igeg-srmvrelfvm----arehapsiifmdeidsigs~r~e~~~g---gdsevqrtmlellnqldgfea 283 (404)
T KOG0728 213 SGSELVQ-KYIGEG-SRMVRELFVM----AREHAPSIIFMDEIDSIGSSRVESGSG---GDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred CHHHHHH-HHHHHH-HHHHHHHHHH----HHHCCCCEEEEHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHCCCCCC
T ss_conf 4499999-985013-8999999999----875088267500001212343457898---638999999999974024000
Q ss_pred ECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf 02565564322243024310001232200046789887641234333211110000000168999641056777522068
Q gi|254780271|r 222 SVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIP 301 (424)
Q Consensus 222 ~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliP 301 (424)
+ .+.-.|+.+|-+- ++.. . -+.|
T Consensus 284 t-----------knikvimatnrid--------------------------------------ild~---a-----llrp 306 (404)
T KOG0728 284 T-----------KNIKVIMATNRID--------------------------------------ILDP---A-----LLRP 306 (404)
T ss_pred C-----------CCEEEEEECCCCC--------------------------------------CCCH---H-----HCCC
T ss_conf 3-----------6626998416422--------------------------------------2468---6-----6387
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9872078426721110578999987426779999999987449899
Q gi|254780271|r 302 EFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVEL 347 (424)
Q Consensus 302 El~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L 347 (424)
||++--++|.|-+++.-..||.--. .++--|.||+|
T Consensus 307 ---gridrkiefp~p~e~ar~~ilkihs-------rkmnl~rgi~l 342 (404)
T KOG0728 307 ---GRIDRKIEFPPPNEEARLDILKIHS-------RKMNLTRGINL 342 (404)
T ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHCCCCH
T ss_conf ---7545556489987788878998855-------53013306678
No 95
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.85 E-value=1.7e-07 Score=72.98 Aligned_cols=222 Identities=26% Similarity=0.402 Sum_probs=144.3
Q ss_pred HHHHHHHCCCHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf 9997420308599999999----999865887521210135522568358840733217699999998718531310122
Q gi|254780271|r 72 LRVLDEYVIGQGQAKKVLA----VAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADAT 147 (424)
Q Consensus 72 ~~~Ld~yVIGQ~~AKkavA----vAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT 147 (424)
-.+|++|| |=++-|+.|- -+.-|. ||.+..-+....-+ ..+|-|..|+|||..||-|||++. |+.
T Consensus 2 ~~EL~~~v-GL~~vK~~i~EiYA~i~i~~-kR~~~GLk~~~~~L---HMiFKGNPGTGKTTVAR~~gklf~------emn 70 (261)
T TIGR02881 2 ERELSRLV-GLDEVKELIKEIYAWIQINE-KRKEEGLKTSKQVL---HMIFKGNPGTGKTTVARLLGKLFK------EMN 70 (261)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCEE---EEEEECCCCCCHHHHHHHHHHHHH------HCC
T ss_conf 12356404-88899999999999999988-88751011488447---877427866843899999999985------337
Q ss_pred HHH-----H---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 111-----1---11035563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 148 TLT-----E---AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 148 ~~T-----E---~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
-|+ | |-.||+=.++- .+..-..+++|.-||.|+||.=-+++-.+ .| .|...=+.|-|-+|+.
T Consensus 71 vL~KGH~iE~ERADLVGEYIGHT----AqkTRe~~kkA~GGvLFiDEAYSLaRGGE-----KD-FGKEAIDtLVK~mEd~ 140 (261)
T TIGR02881 71 VLSKGHLIEVERADLVGEYIGHT----AQKTREVIKKALGGVLFIDEAYSLARGGE-----KD-FGKEAIDTLVKAMEDQ 140 (261)
T ss_pred CCCCCCEEEEEECCCCCCCCCCH----HHHHHHHHHHHCCCCHHHHHHHHHHCCCC-----CC-CCCHHHHHHHHHHHHC
T ss_conf 56788678876222122320300----48999999986388005577777614888-----87-6620888999987615
Q ss_pred EEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 01025655643222430243100012322000467898876412343332111100000001689996410567775220
Q gi|254780271|r 220 IASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 (424)
Q Consensus 220 ~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gl 299 (424)
. .+...|..|=..+| +-+|. +
T Consensus 141 ~---------------------~~lvlILAGY~~EM---------------------------~yFL~-----------~ 161 (261)
T TIGR02881 141 R---------------------NELVLILAGYSDEM---------------------------DYFLS-----------L 161 (261)
T ss_pred C---------------------CCEEEEEECCHHHH---------------------------HHHHH-----------C
T ss_conf 6---------------------98689970876899---------------------------99862-----------0
Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-------CCCCCHHHH
Q ss_conf 6898720784267211105789999874267799999999874498999968999999995510-------678742368
Q gi|254780271|r 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-------HKTGARGLR 372 (424)
Q Consensus 300 iPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-------~niGAR~Lr 372 (424)
=|=|.-|||+...|..=|.|+|..|. ..++++-.. .||.+|...+-+.=.. ..--||-.|
T Consensus 162 NPGL~SRFPi~i~FPdY~~eeL~~Ia----~~m~~~ReY---------~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vR 228 (261)
T TIGR02881 162 NPGLRSRFPISIDFPDYTVEELMEIA----ERMVKEREY---------KLTEEAKWKLREHLAKVDQLSSREFSNARYVR 228 (261)
T ss_pred CCCCCCCCCCEEECCCCCHHHHHHHH----HHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 77977766505418899888999999----999864642---------25788999999997412444210057620124
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999967774027
Q gi|254780271|r 373 SILEKILLDTMFEL 386 (424)
Q Consensus 373 tIiE~iLedimFe~ 386 (424)
.|+|+-.-.----+
T Consensus 229 N~iE~AIR~QAvRl 242 (261)
T TIGR02881 229 NIIEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 28899999999876
No 96
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=7.2e-09 Score=82.65 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=72.4
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC--------CCEEEHHHHHH
Q ss_conf 0308599999999999865887521210135522568358840733217699999998718--------53131012211
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID--------VPFTMADATTL 149 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~--------~PF~~vdaT~~ 149 (424)
-||||+++++.+.-|+.+- + .+.-.||.||-|||||.+|+.+|+.+- ..++.+++..
T Consensus 5 ~iiGq~~i~~~L~~~i~~~-----------r---l~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~- 69 (313)
T PRK05564 5 TIIGHENIKNRIDNSIIKG-----------K---FSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN- 69 (313)
T ss_pred HCCCHHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-
T ss_conf 3268299999999999879-----------9---875043279998509999999999982899778898658863322-
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1111035563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 150 TEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 150 TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
..-. -|+. ||+|.+.....--...+.|+.+|+.|+.... .+|+|||.+|..
T Consensus 70 --~~~I--~vd~-IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~--------------AaNALLKtLEEP 120 (313)
T PRK05564 70 --KKSI--GVDD-IRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQ--------------AQNAFLKTIEEP 120 (313)
T ss_pred --CCCC--CHHH-HHHHHHHHHHCCCCCCCEEEEECCHHHHCHH--------------HHHHHHHCCCCC
T ss_conf --5699--9899-9999999840862589569998077775899--------------999984550368
No 97
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=3.7e-08 Score=77.68 Aligned_cols=223 Identities=19% Similarity=0.277 Sum_probs=141.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH----HCCCEEEH
Q ss_conf 89999974203085999999999998658875212101355225683588407332176999999987----18531310
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI----IDVPFTMA 144 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~----l~~PF~~v 144 (424)
.-++..--.-+||.+.+-+.+ +.+.++. . ..-.++|++|+||+||+.+|+.|... .+.||+.+
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~----~eqik~~----a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~ 136 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQEL----REQIKAY----A-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF 136 (403)
T ss_pred HHCCCHHHHHHHCCCHHHHHH----HHHHHHH----C-----CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 210221566663568889999----9999861----8-----99984798668875388999999986121358987997
Q ss_pred HHHHHHHHH------------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 122111111------------03556330357788765422776542233322333200233333344321025689887
Q gi|254780271|r 145 DATTLTEAG------------YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQAL 212 (424)
Q Consensus 145 daT~~TE~G------------YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~L 212 (424)
.|..|+|-. |-|.+- ...+-.++|..|++|+|||-..-+. +|..|
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~---------~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kL 193 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQG---------GKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKL 193 (403)
T ss_pred EHHHHCCCHHHHHHHCCCCCEEECCCC---------CCCCHHEECCCCEEEHHHHHHCCHH--------------HHHHH
T ss_conf 777737677777773200000025667---------8676420527977765636537985--------------89999
Q ss_pred HHHCCCCEEE-CCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5310587010-256556432224302431000123220004678988764123433321111000000016899964105
Q gi|254780271|r 213 LKIMEGTIAS-VPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLES 291 (424)
Q Consensus 213 Lkileg~~~~-v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
|+.+|.+..+ +...+ ....++..+|..+-+. .+.+..
T Consensus 194 l~~le~g~~~rvG~~~-----------~~~~dVRli~AT~~~l----------------------------~~~~~~--- 231 (403)
T COG1221 194 LRVLEEGEYRRVGGSQ-----------PRPVDVRLICATTEDL----------------------------EEAVLA--- 231 (403)
T ss_pred HHHHHCCCEEECCCCC-----------CCCCCCEEEECCCCCH----------------------------HHHHHH---
T ss_conf 9998718657668888-----------8677740451356687----------------------------999874---
Q ss_pred HHHHHHCHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHH
Q ss_conf 67775220689872-07842672111057899998742677999999998744989999689999999955106787423
Q gi|254780271|r 292 EDLVKFGLIPEFIG-RLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARG 370 (424)
Q Consensus 292 ~DL~~~gliPEl~G-RlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~ 370 (424)
| ..|.= |+|.++.|-||.+= ...|+--.+ ..+++|..-+... ...+.++|++.+-...+--|+ |-
T Consensus 232 ------g--~dl~~rl~~~~I~LPpLrER-~~Di~~L~e-~Fl~~~~~~l~~~--~~~~~~~a~~~L~~y~~pGNi--rE 297 (403)
T COG1221 232 ------G--ADLTRRLNILTITLPPLRER-KEDILLLAE-HFLKSEARRLGLP--LSVDSPEALRALLAYDWPGNI--RE 297 (403)
T ss_pred ------H--CCHHHHHCCCEECCCCHHHC-HHHHHHHHH-HHHHHHHHHCCCC--CCCCCHHHHHHHHHCCCCCCH--HH
T ss_conf ------0--52556416754318972435-555999999-9999999973999--888889999999848899839--99
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6899999967774
Q gi|254780271|r 371 LRSILEKILLDTM 383 (424)
Q Consensus 371 LrtIiE~iLedim 383 (424)
|+..+|++..-..
T Consensus 298 LkN~Ve~~~~~~~ 310 (403)
T COG1221 298 LKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999735
No 98
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=98.84 E-value=2.4e-08 Score=79.01 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC---CC
Q ss_conf 105789999874267799999999874498999968999999995510678742368999999677740276789---84
Q gi|254780271|r 316 LDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLK---GV 392 (424)
Q Consensus 316 Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~---~~ 392 (424)
|+++++.+|+.. .+.+....++..||+|+|+++++++|++.+++.++|||+|++++++.+++++.+..-.. ..
T Consensus 1 L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~~GAR~l~r~I~~~i~~~la~~il~~~~~~~ 76 (89)
T pfam10431 1 LSKEELRQIVDL----QLKRLQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEG 76 (89)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 988999999999----9999999999789079986899999998356756794789999999999999999984989997
Q ss_pred CEEEECHH
Q ss_conf 19998377
Q gi|254780271|r 393 SSVIISDD 400 (424)
Q Consensus 393 ~~v~Id~~ 400 (424)
.++.|+-+
T Consensus 77 ~~i~i~~~ 84 (89)
T pfam10431 77 DTVRVDVD 84 (89)
T ss_pred CEEEEEEC
T ss_conf 99999715
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=5.7e-09 Score=83.37 Aligned_cols=112 Identities=31% Similarity=0.461 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCE-------EEHH-HHHHH
Q ss_conf 308599999999999865887521210135522568358840733217699999998718531-------3101-22111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPF-------TMAD-ATTLT 150 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF-------~~vd-aT~~T 150 (424)
||||+..++.+..|+.+. | ...-.||.||-|||||-+||-|||.||..- -.++ |..+.
T Consensus 17 viGQe~v~~~L~~Ai~~g--r------------i~HAYLFsGprG~GKTt~ARilAkaLNC~~~~~~~PCg~C~sC~~i~ 82 (775)
T PRK07764 17 VVGQEHVTEPLSTALDSG--R------------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTSTPCGVCDSCVALA 82 (775)
T ss_pred HCCCHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 228599999999999819--9------------76337623788878889999999996689999989888876378886
Q ss_pred HHH-----HC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 111-----03------5563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAG-----YV------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~G-----Yv------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.-+ ++ ..-|+. ||+|.+...+.--...|.|..|||.+.++.. .+|+|||+||..
T Consensus 83 ~g~~~~~DviEiDAAS~~gVdd-iReL~e~~~y~P~~~ryKVyIIDEaHmls~~--------------afNALLKtLEEP 147 (775)
T PRK07764 83 PGGPGSLDVVEIDAASHGGVDD-ARELRERAFFAPAQSRYRIFIIDEAHMVTTA--------------GFNALLKIVEEP 147 (775)
T ss_pred CCCCCCCCEEEECCCCCCCHHH-HHHHHHHCCCCCCCCCEEEEEEECHHHHCHH--------------HHHHHHHHHCCC
T ss_conf 3898888668731565568899-9999985476876786359998535440799--------------999998862278
No 100
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.84 E-value=6.2e-09 Score=83.10 Aligned_cols=63 Identities=30% Similarity=0.560 Sum_probs=49.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHHHH
Q ss_conf 2030859999999999986588752121013552256835884073321769999999871--853131012211
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--DVPFTMADATTL 149 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT~~ 149 (424)
+-.|||.+|.+|..+.| +=++.. .+.-+-|||.||.|+|||-||-.+|+-| ++||+..-++..
T Consensus 24 ~GlVGQ~~AReAagiiv----~mIk~~------K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEv 88 (395)
T pfam06068 24 EGLVGQEKAREAAGVIV----EMIKEG------KIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEV 88 (395)
T ss_pred CCCCCHHHHHHHHHHHH----HHHHHC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEE
T ss_conf 77545499999989999----999727------757738998779998889999999997487997345001112
No 101
>KOG0735 consensus
Probab=98.83 E-value=1.7e-08 Score=80.08 Aligned_cols=130 Identities=31% Similarity=0.504 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCC
Q ss_conf 3085999999999998--65887521210135522568358840733217699999998718531310122111111035
Q gi|254780271|r 79 VIGQGQAKKVLAVAVH--NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~--nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG 156 (424)
|=|-.+||+++--.+- ..|--+- ..-..+ .+++|||-||.|||||+||-.+|.-.+.-|+-|---++- ..|+|
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if-~~~plr---~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL-~KyIG 743 (952)
T KOG0735 669 IGGLFEAKKVLEEVIEWPSKYPQIF-ANCPLR---LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL-SKYIG 743 (952)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHH-HHCCCC---CCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHH-HHHHC
T ss_conf 3358999999999985541036788-608866---655458877999857888888885378059982588999-98745
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 56330357788765422776542233322333200233333344321025689887531058701
Q gi|254780271|r 157 EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIA 221 (424)
Q Consensus 157 ~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~ 221 (424)
.. |.-+|+|.+.| ..|.-+|+|+||+|-++++....+.+ |. ..|-|-||-.|+|.+.
T Consensus 744 aS-Eq~vR~lF~rA----~~a~PCiLFFDEfdSiAPkRGhDsTG--VT-DRVVNQlLTelDG~Eg 800 (952)
T KOG0735 744 AS-EQNVRDLFERA----QSAKPCILFFDEFDSIAPKRGHDSTG--VT-DRVVNQLLTELDGAEG 800 (952)
T ss_pred CC-HHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCCCCC--CH-HHHHHHHHHHHCCCCC
T ss_conf 00-78899999986----51497489712102437666877777--42-9999999876036334
No 102
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=4.3e-08 Score=77.22 Aligned_cols=113 Identities=28% Similarity=0.398 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC------------EEEHH-
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853------------13101-
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP------------FTMAD- 145 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P------------F~~vd- 145 (424)
+|||+.-.+++.-|+..- | ...-+||.||-|||||-+||-|||.+|.- --.++
T Consensus 25 ~~gq~~~~~~l~~~~~~~--~------------~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~ 90 (600)
T PRK09111 25 LIGQEAMVRTLRNAFETG--R------------IAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH 90 (600)
T ss_pred HCCCHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 338599999999999729--8------------42047645789878999999999996698876668998898998865
Q ss_pred HHHHHHHHHC---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2211111103---------5563303577887654227765422333223332002333333443210256898875310
Q gi|254780271|r 146 ATTLTEAGYV---------GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM 216 (424)
Q Consensus 146 aT~~TE~GYv---------G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil 216 (424)
|...++-.++ -.-|+. +|+|++...|.--.+.+-|-.|||+--++.. .+|+|||.|
T Consensus 91 c~~i~~~~~~d~~e~daas~~~v~~-~r~~~~~~~~~p~~~~~kv~iidevhmls~~--------------afnallktl 155 (600)
T PRK09111 91 CQAIMEGRHVDVIEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTA--------------AFNALLKTL 155 (600)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHH-HHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--------------HHHHHHHHH
T ss_conf 8988668998758851554578889-9999986053887775469996001105799--------------999999876
Q ss_pred CCCE
Q ss_conf 5870
Q gi|254780271|r 217 EGTI 220 (424)
Q Consensus 217 eg~~ 220 (424)
|..-
T Consensus 156 eepp 159 (600)
T PRK09111 156 EEPP 159 (600)
T ss_pred HCCC
T ss_conf 2598
No 103
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.82 E-value=6.3e-08 Score=76.07 Aligned_cols=201 Identities=19% Similarity=0.326 Sum_probs=127.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871---853131012211111----103556330357788765422776542233322
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
..++|..|.|||||..+||.|-+.. +.||+.+.|..++|- -.-|..-+.- ..-...-.+..+.|..|.+|+|
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAF-TGA~~~r~G~fE~A~GGTLfLD 242 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAF-TGAITRRIGRFEQANGGTLFLD 242 (464)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCEEECCCCEEEEE
T ss_conf 997899778987589999999860744589925633464898887777614565676-7764345761577379658732
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 33320023333334432102568988753105870102565564322243024310001232200046789887641234
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEK 265 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~ 265 (424)
||...... +|.-||++++... +..-||++.-.-+-..|-++|. .|
T Consensus 243 EI~~mpl~--------------~Q~kLLRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~---------dL---------- 287 (464)
T COG2204 243 EIGEMPLE--------------LQVKLLRVLQERE--FERVGGNKPIKVDVRIIAATNR---------DL---------- 287 (464)
T ss_pred CCCCCCHH--------------HHHHHHHHHHCCE--EEECCCCCEECEEEEEEEECCC---------CH----------
T ss_conf 31109999--------------9999999987070--6735888600001699960577---------89----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333211110000000168999641056777522068987207842-67211105--789999874267799999999874
Q gi|254780271|r 266 ASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDM 342 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~ 342 (424)
.+....+ -|+..|-=||-++ +.+-||-+ ||.--+. +-+++|+.+-+.
T Consensus 288 -----------------~~~v~~G--------~FReDLyyRLnV~~i~iPpLRER~EDIp~L~----~hfl~~~~~~~~- 337 (464)
T COG2204 288 -----------------EEEVAAG--------RFREDLYYRLNVVPLRLPPLRERKEDIPLLA----EHFLKRFAAELG- 337 (464)
T ss_pred -----------------HHHHHCC--------CCHHHHHHHHCCCEECCCCCCCCCHHHHHHH----HHHHHHHHHHHC-
T ss_conf -----------------9998819--------7378888652331104876223620079999----999999999809-
Q ss_pred CCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 4989999689999999955106787423689999996777
Q gi|254780271|r 343 EDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 343 egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
--...|+++|++.+....|--|+ |-|+.++|+.+.-.
T Consensus 338 -~~~~~~s~~a~~~L~~y~WPGNV--REL~N~ver~~il~ 374 (464)
T COG2204 338 -RPPKGFSPEALAALLAYDWPGNV--RELENVVERAVILS 374 (464)
T ss_pred -CCCCCCCHHHHHHHHHCCCCHHH--HHHHHHHHHHHHCC
T ss_conf -99888799999999738998189--99999999998517
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.81 E-value=1.3e-07 Score=73.80 Aligned_cols=128 Identities=27% Similarity=0.460 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 9878999997420---------------3085999999999998658875212101355225683588407332176999
Q gi|254780271|r 66 PNPQEILRVLDEY---------------VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLA 130 (424)
Q Consensus 66 ~tP~eI~~~Ld~y---------------VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelA 130 (424)
+.|....+.|++| |||-++=-+.+---|. || .|+|.+|||..|||||-|+
T Consensus 147 ~~~~~~~~~L~~y~~dLT~~A~~gklDpviGRd~Ei~r~i~IL~---Rr------------~KNNpiLVGepGVGKTAIv 211 (852)
T TIGR03346 147 ANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLS---RR------------TKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH---HH------------CCCCCCEECCCCCCHHHHH
T ss_conf 88754357899998889999982899977383699999999998---73------------2489721279998799999
Q ss_pred HHHHHHH---CCCEEE-------HHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871---853131-------012211-11110355633035778876542277654-22333223332002333333
Q gi|254780271|r 131 QTLARII---DVPFTM-------ADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQ-RGIVYIDEVDKISRKSDNPS 198 (424)
Q Consensus 131 r~LAk~l---~~PF~~-------vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~-~~iv~iDEidKi~~~~~~~~ 198 (424)
.-||..+ +||-.. .|+..+ ..+.|-|+ -|.-+..+++. +...+ .-|+||||+--+-.... ..
T Consensus 212 EGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGe-FEeRlk~ii~e----v~~~~~~iILFIDEiHtliGaG~-~~ 285 (852)
T TIGR03346 212 EGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE-FEERLKAVLNE----VTKSEGQIILFIDELHTLVGAGK-AE 285 (852)
T ss_pred HHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHH-HHHHHHHHHHH----HHHCCCCEEEEEHHHHHHCCCCC-CC
T ss_conf 99999986699997885185127528877521530078-99999999999----98589987999612555326887-66
Q ss_pred CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 443210256898875310587
Q gi|254780271|r 199 ITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 199 ~~~dvs~~gvq~~LLkileg~ 219 (424)
.+-..-|.|-..|.-+
T Consensus 286 -----G~~DAaNlLKPaLarG 301 (852)
T TIGR03346 286 -----GAMDAGNMLKPALARG 301 (852)
T ss_pred -----CCCCHHHHHHHHHHCC
T ss_conf -----6410677743787479
No 105
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.78 E-value=6.4e-09 Score=83.01 Aligned_cols=135 Identities=22% Similarity=0.401 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH---
Q ss_conf 3085999999999998658875212101355225683588407332176999999987---1853131012211111---
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA--- 152 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~--- 152 (424)
+||+..+-+.+ +...+|+. -...+||+.|++|+||+.+||.+-.. .+.||+.++|..+.+.
T Consensus 1 lIG~S~~m~~l----~~~i~~~a---------~~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le 67 (168)
T pfam00158 1 LIGESPAMQEV----LELAKRVA---------PTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLE 67 (168)
T ss_pred CEECCHHHHHH----HHHHHHHH---------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 97389999999----99999995---------889988998999888899999999852435688312567899877999
Q ss_pred -HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf -1035563303577887654227765422333223332002333333443210256898875310587010256556432
Q gi|254780271|r 153 -GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231 (424)
Q Consensus 153 -GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~ 231 (424)
-.-|..-++. ..-.....+..++|..|.+|+|||+.+... +|..||+.++..... +.++.+.
T Consensus 68 ~~LFG~~~g~f-~ga~~~~~G~le~A~gGTL~LdeI~~L~~~--------------~Q~~Ll~~L~~~~~~--~~g~~~~ 130 (168)
T pfam00158 68 SELFGHEKGAF-TGAVSDRKGLFELADGGTLFLDEIGELPLE--------------LQAKLLRVLQEGEFE--RVGGTKP 130 (168)
T ss_pred HHHCCCCCCCC-CCCCCCCCCCEEECCCCEEECCCHHHCCHH--------------HHHHHHHHHHCCEEE--ECCCCCE
T ss_conf 98758766766-898757899642269987880244139999--------------999999998579699--7799845
Q ss_pred CCCCEEEEECCH
Q ss_conf 224302431000
Q gi|254780271|r 232 PQQEFLQVDTTN 243 (424)
Q Consensus 232 ~~~~~~~Idt~n 243 (424)
...+...|-+++
T Consensus 131 ~~~~vRiIast~ 142 (168)
T pfam00158 131 IKVDVRIIAATN 142 (168)
T ss_pred EEEEEEEEEECC
T ss_conf 888549999659
No 106
>KOG0727 consensus
Probab=98.76 E-value=1.4e-08 Score=80.64 Aligned_cols=97 Identities=27% Similarity=0.498 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|.-+||.||.|||||.||+..|.-..+.|++|--+.|.+ .|.|+- --|++|....|.. ...+|||+||+|-|+
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvq-kylgeg-prmvrdvfrlake----napsiifideidaia 261 (408)
T KOG0727 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIA 261 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHH-HHHCCC-CHHHHHHHHHHHC----CCCCEEEEEHHHHHH
T ss_conf 9862277579997578999998612611144630189999-985548-3899999998761----698379862245676
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.+.-..+.+ +...||..|+.++.
T Consensus 262 tkrfdaqtg---adrevqril~elln 284 (408)
T KOG0727 262 TKRFDAQTG---ADREVQRILIELLN 284 (408)
T ss_pred HHHCCCCCC---CCHHHHHHHHHHHH
T ss_conf 641244446---31899999999997
No 107
>KOG0740 consensus
Probab=98.75 E-value=6.2e-08 Score=76.09 Aligned_cols=108 Identities=32% Similarity=0.448 Sum_probs=82.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCC
Q ss_conf 03085999999999998658875212101355225683588407332176999999987185313101221111110355
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE 157 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~ 157 (424)
-|-|.+.||+++--+|-=-..| .......+. .+.-+|+.||-|+|||.|++.+|--.++-|--+-|+.+|- -|+|+
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr-~d~F~glr~--p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts-K~~Ge 229 (428)
T KOG0740 154 DIAGLEDAKQSLKEAVILPLLR-PDLFLGLRE--PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS-KYVGE 229 (428)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-HHHHHCCCC--CCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHHHH-HCCCH
T ss_conf 7740566899865423220455-376523544--5311120058988447999999862066576306888653-24670
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6330357788765422776542233322333200233
Q gi|254780271|r 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKS 194 (424)
Q Consensus 158 Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~ 194 (424)
- |.++|.|...|. ..+.++||+||+|++-.+.
T Consensus 230 ~-eK~vralf~vAr----~~qPsvifidEidslls~R 261 (428)
T KOG0740 230 S-EKLVRALFKVAR----SLQPSVIFIDEIDSLLSKR 261 (428)
T ss_pred H-HHHHHHHHHHHH----HCCCEEEEECHHHHHHHHC
T ss_conf 7-789999999987----1397089840256788636
No 108
>KOG0737 consensus
Probab=98.74 E-value=1.5e-08 Score=80.50 Aligned_cols=121 Identities=30% Similarity=0.392 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
+..|.+|-..-+. |=|=+.-|.++--+|.=-.||...-. ...--..+++||+-||.|||||.+|+++|+-.+++|+-+
T Consensus 81 ~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~pelF~-~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737 81 VVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRRPELFA-KGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCCHHHCEEEHHH-CCCHHHHHHHHHHHHHHCCCCHHHHC-CCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 0142232020241-33528999999987752012466641-453146864305118998218899999998727971000
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1221111110355633035778876542277654223332233320023
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRK 193 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~ 193 (424)
.++.+|+.=| |+. .+|+.+--.-..+-+-.|||+||+|-....
T Consensus 159 ~~s~lt~KWf-gE~-----eKlv~AvFslAsKl~P~iIFIDEvds~L~~ 201 (386)
T KOG0737 159 SVSNLTSKWF-GEA-----QKLVKAVFSLASKLQPSIIFIDEVDSFLGQ 201 (386)
T ss_pred ECCCCCHHHH-HHH-----HHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
T ss_conf 1365532667-778-----889999982065348615656658889864
No 109
>KOG0651 consensus
Probab=98.74 E-value=3e-08 Score=78.33 Aligned_cols=103 Identities=26% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35522-56835884073321769999999871853131012211111103556330357788765422776542233322
Q gi|254780271|r 107 SNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYID 185 (424)
Q Consensus 107 ~~~ei-~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iD 185 (424)
.++-| .|+-.|+-||-|.|||++||.+|..+++.|+++-|+.+- -+|.|+. .-+||+.... .+..+.+++|+|
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv-~kyiGEs-aRlIRemf~y----A~~~~pciifmd 232 (388)
T KOG0651 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV-DKYIGES-ARLIRDMFRY----AREVIPCIIFMD 232 (388)
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH-HHHCCCH-HHHHHHHHHH----HHHHCCEEEEEH
T ss_conf 345777882568767999864599999998659854774476663-3002657-8899999977----865275577510
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 333200233333344321025689887531058
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
|||-+....... .-++...||..|..++++
T Consensus 233 eiDAigGRr~se---~Ts~dreiqrTLMeLlnq 262 (388)
T KOG0651 233 EIDAIGGRRFSE---GTSSDREIQRTLMELLNQ 262 (388)
T ss_pred HHHHHCCEEECC---CCCHHHHHHHHHHHHHHH
T ss_conf 123114577335---552059999999999874
No 110
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.2e-07 Score=74.14 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHHHHHHH
Q ss_conf 308-59999999999986588752121013552256835884073321769999999871853-------1310122111
Q gi|254780271|r 79 VIG-QGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMADATTLT 150 (424)
Q Consensus 79 VIG-Q~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vdaT~~T 150 (424)
|+| |+.+++.+.-|+.+- + .+.-.||.||.|+||+.+|+.+|+.+.-. =-.+..-...
T Consensus 7 ~~~~Q~~i~~~L~~~i~~~-----------r---l~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~ 72 (329)
T PRK08058 7 LTALQPIVVKMLQNSIAKN-----------R---LAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHHHHHHHHHHHHHCC-----------C---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 8831899999999999859-----------9---6615655789998899999999999739999999988788899998
Q ss_pred HHH------HCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 111------03556-----3303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 151 EAG------YVGED-----VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 151 E~G------YvG~D-----vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+.| ++-.| ||. ||+|.+.....--...+.|+.||+.|+.... .+|+|||.||..
T Consensus 73 ~~~~HPD~~~i~p~~~~i~idq-iR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~--------------AaNALLKtLEEP 137 (329)
T PRK08058 73 ESGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTAS--------------AANSLLKFLEEP 137 (329)
T ss_pred HCCCCCCEEEECCCCCCCCHHH-HHHHHHHHCCCCCCCCCEEEEEECHHHHCHH--------------HHHHHHHHHHCC
T ss_conf 7699997677456614077999-9999999643875788679997347762999--------------999999986468
No 111
>KOG0741 consensus
Probab=98.71 E-value=2.4e-08 Score=79.02 Aligned_cols=102 Identities=30% Similarity=0.499 Sum_probs=67.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEE-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 835884073321769999999871853131-0122111111035563303577887654227765----42233322333
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTM-ADATTLTEAGYVGEDVENIILKLLQAADYNVERA----QRGIVYIDEVD 188 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~-vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a----~~~iv~iDEid 188 (424)
+-|||-||.|+|||++||.+.++||+---| |.--..- -.|||+.-++ +|+|...|...-++. .--||.+||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeSE~N-vR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGESEEN-VRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHCCCHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
T ss_conf 35788779998701899998787457998634757889-8760630788-999987579999843766772599963467
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 200233333344321025689887531058
Q gi|254780271|r 189 KISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 189 Ki~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
-|++...+......|... |-|-||--++|
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDG 363 (744)
T KOG0741 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDG 363 (744)
T ss_pred HHHHHCCCCCCCCCCCHH-HHHHHHHHCCC
T ss_conf 999744887898863189-99999985322
No 112
>KOG0736 consensus
Probab=98.70 E-value=4.2e-08 Score=77.29 Aligned_cols=240 Identities=28% Similarity=0.376 Sum_probs=142.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCC
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853131012211111103556
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGED 158 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~D 158 (424)
|=|=+++|..+--.+.--.+.-.......+ ..|-|||-||.|+|||++|++.|--....|.-|---++-- =|||+.
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglr---kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN-MYVGqS 749 (953)
T KOG0736 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLR---KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN-MYVGQS 749 (953)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHCCCC---CCCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHH-HHHCCH
T ss_conf 557899999999875475437566512543---1350588779998557999998754303678505889988-774301
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEE
Q ss_conf 33035778876542277654223332233320023333334432102568988753105870102565564322243024
Q gi|254780271|r 159 VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQ 238 (424)
Q Consensus 159 vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~ 238 (424)
-++ +|+..+.| +.|.-++||+||+|-+++.....+....|...-|.|. |-.|+|-..
T Consensus 750 E~N-VR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQL-LAELDgls~----------------- 806 (953)
T KOG0736 750 EEN-VREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQL-LAELDGLSD----------------- 806 (953)
T ss_pred HHH-HHHHHHHH----HCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHCCCC-----------------
T ss_conf 888-99999985----4469749983121232756788788654089999999-998626667-----------------
Q ss_pred EECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHCCCCEEEECCCC
Q ss_conf 3100012322000467898876412343332111100000001689996410567775-220689872078426721110
Q gi|254780271|r 239 VDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVK-FGLIPEFIGRLPVLATLEDLD 317 (424)
Q Consensus 239 Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~-~gliPEl~GRlPiiV~L~~Lt 317 (424)
+++.-.|+.|.. + . -||+. .=|.| |||+-.|.+.+=.
T Consensus 807 -~~s~~VFViGAT----------------------N-R---------------PDLLDpALLRP---GRFDKLvyvG~~~ 844 (953)
T KOG0736 807 -SSSQDVFVIGAT----------------------N-R---------------PDLLDPALLRP---GRFDKLVYVGPNE 844 (953)
T ss_pred -CCCCCEEEEECC----------------------C-C---------------CCCCCHHHCCC---CCCCEEEEECCCC
T ss_conf -888865998258----------------------8-8---------------55457655388---7655248855885
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC---------
Q ss_conf 5-789999874267799999999874-49899996899999999551067874236899999967774027---------
Q gi|254780271|r 318 E-NSLIRILSEPKNALIKQYQCLFDM-EDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFEL--------- 386 (424)
Q Consensus 318 ~-edl~rILtepknsLikQy~~Ll~~-egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~--------- 386 (424)
. +.=.+|| -|+.+ -|+. ++|+ +.+||+..-..=+||- |.+++-..|+..+-.-
T Consensus 845 d~esk~~vL----~AlTr----kFkLdedVd-------L~eiAk~cp~~~TGAD-lYsLCSdA~l~AikR~i~~ie~g~~ 908 (953)
T KOG0736 845 DAESKLRVL----EALTR----KFKLDEDVD-------LVEIAKKCPPNMTGAD-LYSLCSDAMLAAIKRTIHDIESGTI 908 (953)
T ss_pred CHHHHHHHH----HHHHH----HCCCCCCCC-------HHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 678899999----99887----702878767-------9999963896775247-9999889999999999777650553
Q ss_pred C-CCCCCCEEEECHHHHC
Q ss_conf 6-7898419998377855
Q gi|254780271|r 387 P-MLKGVSSVIISDDVVK 403 (424)
Q Consensus 387 P-~~~~~~~v~Id~~~V~ 403 (424)
+ ...+-.+|+|+.+--.
T Consensus 909 ~~~e~~~~~v~V~~eDfl 926 (953)
T KOG0736 909 SEEEQESSSVRVTMEDFL 926 (953)
T ss_pred CCCCCCCCEEEEEHHHHH
T ss_conf 300148851788789999
No 113
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.70 E-value=2.5e-08 Score=78.82 Aligned_cols=99 Identities=31% Similarity=0.540 Sum_probs=61.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|+-|||.||.|+|||+||+.+|.-.++.|+.+.--..+. .|+|+. |.-++.....+.. ..-.|+|+||||-++
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeims-ky~Ge~-e~~lr~if~eaee----naP~iifideidaia 312 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMS-KYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIA 312 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH-HHCCCC-HHHHHHHHHHHHH----CCCCEEEEECHHHCC
T ss_conf 9873587558986178999998753055178850603443-313630-7899999986530----587078741211007
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333333443210256898875310587
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
++.+.. +..|... +-..||.+++|.
T Consensus 313 Pkr~e~--~Geve~r-~v~qlltlmdGl 337 (980)
T TIGR01243 313 PKREEV--TGEVEKR-VVAQLLTLMDGL 337 (980)
T ss_pred CCCCCH--HHHHHHH-HHHHHHHHHHHH
T ss_conf 641000--0168899-999999997400
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.67 E-value=4e-07 Score=70.45 Aligned_cols=99 Identities=26% Similarity=0.386 Sum_probs=63.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCC-------EEEHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---853-------131012211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVP-------FTMADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~P-------F~~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
.|+|.+|+|+.|||||-|+.-||..+ +|| ..-.|.+.+ ..+.|-|+ -|.-+..++.... +....-
T Consensus 198 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGe-FEeRLk~il~ev~---~~~~~i 273 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE-FEERLKGVLNDLA---KQEGNV 273 (857)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHHHH---HCCCCE
T ss_conf 789975878999889999999999998389997881690247338878614765211-7999999999998---478986
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 3332233320023333334432102568988753105870
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
|+||||+--+-..... . .+-..-|.|-..|.-+.
T Consensus 274 ILFIDEiHtlvGaG~~-~-----G~~DaaNlLKPaLaRGe 307 (857)
T PRK10865 274 ILFIDELHTMVGAGKA-D-----GAMDAGNMLKPALARGE 307 (857)
T ss_pred EEEECCHHHHCCCCCC-C-----CCCCHHHHHHHHHHCCC
T ss_conf 9997343543368877-7-----75347888678873798
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.66 E-value=4.9e-07 Score=69.85 Aligned_cols=101 Identities=31% Similarity=0.420 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEE-------EHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---85313-------1012211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFT-------MADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~-------~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
.|+|.+|+|..|||||-|+.-||..+ +||-. -.|++.+ ..+.|-| |-|..+..++.. ++..+.-
T Consensus 206 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRG-efEeRlk~vi~e----~~~~~~~ 280 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQ----LEQDTNS 280 (758)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCH-HHHHHHHHHHHH----HHHCCCE
T ss_conf 25896021699986999999999999738997655898899845877861686415-499999999999----9857985
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 333223332002333333443210256898875310587010
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
|+||||+--+..........- .+-|.|-..|.-+..+
T Consensus 281 ILFIDEiH~ivGaG~~~gg~~-----DaaNlLKP~LarG~l~ 317 (758)
T PRK11034 281 ILFIDEIHTIIGAGAASGGQV-----DAANLIKPLLSSGKIR 317 (758)
T ss_pred EEEEECHHHHCCCCCCCCCCC-----CHHHHHHHHHHCCCCE
T ss_conf 999804344226887677764-----6788745787469723
No 116
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=4.5e-07 Score=70.12 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=39.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 20308599999999999865887521210135522568358840733217699999998718
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+-||||+.|++.+.-|+.+. | .+.-+||.||.|+||+.+|+.+|+.+.
T Consensus 4 ~~iiGq~~~~~~L~~ai~~~--r------------l~hAyLF~Gp~G~GK~~~A~~fa~~Ll 51 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIEQN--R------------IAPAYLFAGPEGVGRKLAALRFIEGLL 51 (314)
T ss_pred CCCCCCHHHHHHHHHHHHCC--C------------CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 31259499999999999859--9------------674487789998329999999999985
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.65 E-value=1.2e-08 Score=81.20 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=79.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-----------------
Q ss_conf 588407332176999999987185313101-22111111035563303577887654227765-----------------
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMAD-ATTLTEAGYVGEDVENIILKLLQAADYNVERA----------------- 177 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vd-aT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a----------------- 177 (424)
|=|+||||||||-||..||+.++-|-+.+. =..|+-.-.||+--++--++-+.+=..+|-|.
T Consensus 24 vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~kv~DqfihnV~K~~d~~~~~W~D~rLt~Av 103 (265)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGYTRKKVVDQFIHNVVKLEDIVRQNWVDNRLTLAV 103 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 67447888556899999997368968998658232654423154675222232012111342512200266783578997
Q ss_pred --HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC---CCCCEEEEECCHHH
Q ss_conf --422333223332002333333443210256898875310587010256556432---22430243100012
Q gi|254780271|r 178 --QRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH---PQQEFLQVDTTNIL 245 (424)
Q Consensus 178 --~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~---~~~~~~~Idt~nil 245 (424)
-+..|| ||+-. |.+.+.|.||-++|.++..+|++.+... -+.+++.|.|||--
T Consensus 104 ~eG~TLVY-dEF~R--------------skP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~ 161 (265)
T TIGR02640 104 REGFTLVY-DEFTR--------------SKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPV 161 (265)
T ss_pred HCCCEEEE-CCCCC--------------CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCC
T ss_conf 56972766-47578--------------862045656755552321588878778722578870246314870
No 118
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=3.1e-07 Score=71.26 Aligned_cols=197 Identities=20% Similarity=0.361 Sum_probs=123.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHHH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5683588407332176999999987---1853131012211111-------10355633035778876542277654223
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTEA-------GYVGEDVENIILKLLQAADYNVERAQRGI 181 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~i 181 (424)
.+++||+.|-||+||-.+||.+-.. .+-||+.+.|-.+-|. ||+.---..-.. +-..+..+.|..|.
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~---~GK~GlfE~A~gGT 343 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASK---GGKPGLFELANGGT 343 (560)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC---CCCCCCEEECCCCE
T ss_conf 998289953788668999999874484347980787643388888888872767764246445---79976054416983
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHH
Q ss_conf 33223332002333333443210256898875310587010256556432224302431000123220004678988764
Q gi|254780271|r 182 VYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISA 261 (424)
Q Consensus 182 v~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~ 261 (424)
+|+|||-..... .|--||+++..... ..-|+.+....+.+.|-.+|. .+.+.+
T Consensus 344 LFLDEIgempl~--------------LQaKLLRVLQEkei--~rvG~t~~~~vDVRIIAATN~---------nL~~~i-- 396 (560)
T COG3829 344 LFLDEIGEMPLP--------------LQAKLLRVLQEKEI--ERVGGTKPIPVDVRIIAATNR---------NLEKMI-- 396 (560)
T ss_pred EEEHHHCCCCHH--------------HHHHHHHHHHHCEE--EECCCCCCEEEEEEEEECCCC---------CHHHHH--
T ss_conf 771232039989--------------99999998753537--853788753567899942575---------899998--
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 1234333211110000000168999641056777522068987207842-67211105--78999987426779999999
Q gi|254780271|r 262 RGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQC 338 (424)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii-V~L~~Lt~--edl~rILtepknsLikQy~~ 338 (424)
.+++ |+--|-=||.++ +.+-||-+ +|..-.. ..++.+|..
T Consensus 397 -------------------------~~G~--------FReDLYYRLNV~~i~iPPLReR~eDI~~L~----~~Fl~k~s~ 439 (560)
T COG3829 397 -------------------------AEGT--------FREDLYYRLNVIPITIPPLRERKEDIPLLA----EYFLDKFSR 439 (560)
T ss_pred -------------------------HCCC--------CHHHHEEEECEEEECCCCCCCCCCHHHHHH----HHHHHHHHH
T ss_conf -------------------------6396--------165530030401114777233820189999----999999998
Q ss_pred HHHHCCCEEE-ECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9874498999-96899999999551067874236899999967
Q gi|254780271|r 339 LFDMEDVELV-FHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 339 Ll~~egV~L~-FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
.+ +-... ++++|+..+.+.+|--|+ |-|..+||+.+.
T Consensus 440 ~~---~~~v~~ls~~a~~~L~~y~WPGNV--RELeNviER~v~ 477 (560)
T COG3829 440 RY---GRNVKGLSPDALALLLRYDWPGNV--RELENVIERAVN 477 (560)
T ss_pred HC---CCCCCCCCHHHHHHHHHCCCCCHH--HHHHHHHHHHHH
T ss_conf 72---887666899999999868999609--999999999981
No 119
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.62 E-value=1.2e-07 Score=74.18 Aligned_cols=284 Identities=22% Similarity=0.292 Sum_probs=135.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHHHHHHHHHC
Q ss_conf 030859999999999986588752121013552256835884073321769999999871--853131012211111103
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--DVPFTMADATTLTEAGYV 155 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT~~TE~GYv 155 (424)
-.|||.+|.+|..|.| +=++.. .+.-+-|||.||.|+|||-||=.+|+-| ++||+-.-++.+ |-
T Consensus 40 G~VGQ~~AReAaGvIv----~mik~g------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi----YS 105 (450)
T COG1224 40 GLVGQEEAREAAGVIV----KMIKQG------KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI----YS 105 (450)
T ss_pred CCCCHHHHHHHHHHHH----HHHHHC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCEE----EE
T ss_conf 6112498887625999----999717------666617999789997688999999998589998215013322----33
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------------CCCCCCCCCCCCHHHHHH-HH
Q ss_conf 556330-3577887654227765422333223332002---------------------333333443210256898-87
Q gi|254780271|r 156 GEDVEN-IILKLLQAADYNVERAQRGIVYIDEVDKISR---------------------KSDNPSITRDVSGEGVQQ-AL 212 (424)
Q Consensus 156 G~Dves-ii~~L~~~a~~~v~~a~~~iv~iDEidKi~~---------------------~~~~~~~~~dvs~~gvq~-~L 212 (424)
.+---+ .+...+..|.+ ++-.+...||--|+..+.. +......+-.+..+-.+| .-
T Consensus 106 ~E~kKTE~L~qa~RraIG-vrikE~reV~EGeV~~l~i~~~~~p~~~y~~~~~~~~i~LkT~d~~k~~~lg~~i~~ql~~ 184 (450)
T COG1224 106 LEVKKTEALTQALRRAIG-VRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAIITLKTKDEEKTLRLGPEIAEQLVK 184 (450)
T ss_pred ECCCHHHHHHHHHHHHHC-EEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHH
T ss_conf 100088999999998645-4864666888778999987623579987665545328999963664576259899999998
Q ss_pred HHHCCCCEEECCCCCCC-----------------------------CCCCCCEEE------EECC-----HHHHHHHCCH
Q ss_conf 53105870102565564-----------------------------322243024------3100-----0123220004
Q gi|254780271|r 213 LKIMEGTIASVPPQGGR-----------------------------KHPQQEFLQ------VDTT-----NILFICGGAF 252 (424)
Q Consensus 213 Lkileg~~~~v~~~~gr-----------------------------k~~~~~~~~------Idt~-----nilfi~~gaf 252 (424)
+++.+|.+..+..+.|+ -....+... +|.. -++..+++.+
T Consensus 185 ~~V~~GDVI~Id~etG~V~klGrs~~~~~~~~dl~~~~~V~~P~Gev~K~KEi~~~vTLHDlDv~nar~~G~~sl~~~~~ 264 (450)
T COG1224 185 EGVEEGDVIYIDAETGRVKKLGRSKARAREDFDLEDTRFVPLPEGEVQKRKEIVQTVTLHDLDVANARAQGILSLFSGGT 264 (450)
T ss_pred HCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHCCCC
T ss_conf 37445878999825667999422423354223344217987798852566778999870031343204111375652776
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC------------CCC-CCCCHHHHHHHHHHHHH---------------------HHHC
Q ss_conf 6789887641234333211110------------000-00016899964105677---------------------7522
Q gi|254780271|r 253 AGLDRIISARGEKASIGFSAVV------------KDS-DNRPVGEVLRNLESEDL---------------------VKFG 298 (424)
Q Consensus 253 ~~l~~i~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~DL---------------------~~~g 298 (424)
..+..-++...++.--+|-... ..+ -..+...++....-+++ -|+|
T Consensus 265 ~eI~~evR~~vn~~V~~~ieeGkAElVpGVLFIDEvHmLDIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhG 344 (450)
T COG1224 265 GEITDEVREEVNEKVKKWIEEGKAELVPGVLFIDEVHMLDIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHG 344 (450)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCC
T ss_conf 65788999999999999985495786134289732134557899999987631467579997177500121667768888
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 06898720784267211105789999874267799999999874498999968999999995510678742368999999
Q gi|254780271|r 299 LIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI 378 (424)
Q Consensus 299 liPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i 378 (424)
.-+-|+-|+=|+ .-.|-++++...|+.- .... -++..+++|++.+++++.+ +.||-.++
T Consensus 345 IP~DlLDRllII-~t~py~~~EireIi~i-----------Ra~e--e~i~l~~~Ale~L~~ig~e-----tSLRYa~q-- 403 (450)
T COG1224 345 IPLDLLDRLLII-STRPYSREEIREIIRI-----------RAKE--EDIELSDDALEYLTDIGEE-----TSLRYAVQ-- 403 (450)
T ss_pred CCHHHHHHEEEE-ECCCCCHHHHHHHHHH-----------HHHH--HCCCCCHHHHHHHHHHCHH-----HHHHHHHH--
T ss_conf 987666225677-4477988999999997-----------6435--4030488899999751503-----44899998--
Q ss_pred HHHHHHCCCCCCCCCEEEE
Q ss_conf 6777402767898419998
Q gi|254780271|r 379 LLDTMFELPMLKGVSSVII 397 (424)
Q Consensus 379 LedimFe~P~~~~~~~v~I 397 (424)
|+.+.+-...+.+-..|.+
T Consensus 404 LL~pa~iiA~~rg~~~V~~ 422 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEV 422 (450)
T ss_pred HCCHHHHHHHHHCCCEEEH
T ss_conf 6168889998717974656
No 120
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.61 E-value=2.2e-07 Score=72.25 Aligned_cols=232 Identities=17% Similarity=0.240 Sum_probs=131.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf 99997420308599999999999865887521210135522568358840733217699999998718531310122111
Q gi|254780271|r 71 ILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLT 150 (424)
Q Consensus 71 I~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~T 150 (424)
+.+.+.--|.|.+..|++++.++..-..+........|-+ .||||+|=.|+||+.|.|..+++..-.. -+..+.-|
T Consensus 197 L~~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS 272 (509)
T smart00350 197 LSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSS 272 (509)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCC
T ss_conf 9985497323878899999999708876648988504154---1499846998236299999998588606-87344455
Q ss_pred HHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 111035---56330357788765422776542233322333200233333344321025689887531058701025655
Q gi|254780271|r 151 EAGYVG---EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQG 227 (424)
Q Consensus 151 E~GYvG---~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~ 227 (424)
.+|.-. +|.++ ....++ + +..=.|-.|+.+|||+||+.. ..+.+|+..||-..+.+.-.|
T Consensus 273 ~aGLTaav~rd~~~-ge~~le-a-GALVlAD~GiccIDEfdKm~~--------------~dr~alhEaMEQQtisiaKaG 335 (509)
T smart00350 273 AVGLTAAVTRDPET-REFTLE-G-GALVLADNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAG 335 (509)
T ss_pred CCCCEEEEEECCCC-CCEEEC-C-CCEECCCCCEEEEEEHHHCCH--------------HHHHHHHHHHHHCEEEEECCC
T ss_conf 57706899981788-837872-5-641205675478521320787--------------789999999974877874375
Q ss_pred CCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 64322243024310001232200046789887641234333211110000000168999641056777522068987207
Q gi|254780271|r 228 GRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL 307 (424)
Q Consensus 228 grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl 307 (424)
--..-....-.+-..|- ..|-|+ . ... +. -..+|-|-|+-||
T Consensus 336 i~~tL~aR~sVlAAaNP---~~g~yd------------------~------~~s---~~--------eni~l~~~LLSRF 377 (509)
T smart00350 336 ITTTLNARCSVLAAANP---IGGRYD------------------P------KLT---PE--------ENIDLPAPILSRF 377 (509)
T ss_pred EEEEEECCCEEEEEECC---CCCCCC------------------C------CCC---HH--------HHCCCCHHHHHHC
T ss_conf 17998557359986556---556378------------------8------899---99--------9468980354102
Q ss_pred CCEEEECC-----CCHHHHHHHHHHH---------------HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH
Q ss_conf 84267211-----1057899998742---------------6779999999987449899996899999999551
Q gi|254780271|r 308 PVLATLED-----LDENSLIRILSEP---------------KNALIKQYQCLFDMEDVELVFHEDALREIARCAI 362 (424)
Q Consensus 308 PiiV~L~~-----Lt~edl~rILtep---------------knsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~ 362 (424)
+.+-.|.. .+++--.+||..- ...+++.|.+.-+. .+.=.+|++|.+.|.+.=.
T Consensus 378 DLIf~l~D~~~~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~lrkYI~yar~-~~~P~ls~eA~~~i~~~Y~ 451 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE-KIKPKLSEEAAEKLVKAYV 451 (509)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHH
T ss_conf 3899961589878899999999998741588754556886899999999999986-2899789999999999999
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.60 E-value=7.4e-07 Score=68.57 Aligned_cols=98 Identities=30% Similarity=0.425 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCC-------EEEHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---853-------131012211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVP-------FTMADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~P-------F~~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
.|+|.+|||..|||||-|+.-||... +|| ..-.|++.+ ..+.|-|+ -|..+..++.. ++.+..-
T Consensus 199 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe-FEeRlk~il~e----i~~~~~i 273 (823)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE-FEERIKKIMDE----IKKANNI 273 (823)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHH----HHHCCCE
T ss_conf 248850237999879999999999760889986875993688428877533422267-99999999999----9857986
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 3332233320023333334432102568988753105870
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
|+|+||+--+-..... . ++-..-|.|-..|.-+.
T Consensus 274 ILFIDEiHtlvGaG~~-~-----g~~DaaNlLKPaLarGe 307 (823)
T CHL00095 274 ILVIDEIHTLIGAGAA-E-----GAIDAANILKPALARGK 307 (823)
T ss_pred EEEECCHHHHCCCCCC-C-----CCHHHHHHHHHHHHCCC
T ss_conf 9997351653288976-6-----64317887657864898
No 122
>KOG0729 consensus
Probab=98.58 E-value=6.9e-08 Score=75.80 Aligned_cols=97 Identities=28% Similarity=0.484 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|+-+|+.||.|+|||+.||..|...++-|++|=-+.+.+ .|||+- -.|++.|.+.|. ...-+|||+||||-+.
T Consensus 210 PPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQ-KYvGEG-ARMVRElFeMAr----~KKACiiFFDEiDAiG 283 (435)
T KOG0729 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFEMAR----TKKACIIFFDEIDAIG 283 (435)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHH-HHHHHH-HHHHHHHHHHHC----CCCEEEEEEECCCCCC
T ss_conf 9873378689998610899987456674587631189999-986246-899999999852----3652799841010226
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
...-....+ +...||..+|.++.
T Consensus 284 GaRFDDg~g---gDNEVQRTMLEli~ 306 (435)
T KOG0729 284 GARFDDGAG---GDNEVQRTMLELIN 306 (435)
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHH
T ss_conf 720357888---72799999999998
No 123
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=98.58 E-value=1.5e-07 Score=73.36 Aligned_cols=134 Identities=26% Similarity=0.392 Sum_probs=98.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCC
Q ss_conf 20308599999999999865887521210135522568358840733217699999998718531310122111111035
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG 156 (424)
.-|=|-+++|..+--||---.+... ......+ -.|+-+||.||.|+|||+||+..|.-.++.|+-+.--..- ..|||
T Consensus 541 ~diGGlee~kq~lreaveWPlk~~~-~f~k~G~-~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~l-skWvG 617 (980)
T TIGR01243 541 EDIGGLEEVKQELREAVEWPLKAPE-VFEKLGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL-SKWVG 617 (980)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHH-HHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHH-HHHHC
T ss_conf 0146678999999877523444058-9986078-8997348746898616888887740145646774073122-34403
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 157 EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 157 ~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
+. |..|+.....+ +++.-.+||+||||-+++..........|... +-|.||..++|-
T Consensus 618 es-e~~ir~if~~a----rq~aP~~~f~deidaiaP~rG~~~~~~~vtd~-~~nqll~e~dG~ 674 (980)
T TIGR01243 618 ES-EKAIREIFRKA----RQAAPAIIFFDEIDAIAPARGASLDEKGVTDR-IVNQLLTELDGL 674 (980)
T ss_pred HH-HHHHHHHHHHH----HHCCCEEEEEECHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHCC
T ss_conf 24-79999999986----41287378730211105412442100102689-999999864044
No 124
>KOG2170 consensus
Probab=98.57 E-value=1.3e-06 Score=66.98 Aligned_cols=235 Identities=20% Similarity=0.266 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEE
Q ss_conf 7899999742030859999999999986588752121013552256835884073321769999999871-----85313
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----DVPFT 142 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~ 142 (424)
-..+..-|++.+.||.-||..|--|++-||.--+ + +..+ -+=|=|+||+||-..|+-||+-+ +.||+
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p----~KPL---vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V 144 (344)
T KOG2170 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-P----RKPL---VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV 144 (344)
T ss_pred CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC-C----CCCE---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 0678999999863208799999999999862899-9----9875---898308998756489999999987511256268
Q ss_pred EH-HHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 10-1221-111110355633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 143 MA-DATT-LTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 143 ~v-daT~-~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
.- -||. |-++-|+- .-=.+|-..-...+...++.+-.+||.||..+ |+.+.|-..++-
T Consensus 145 ~~fvat~hFP~~~~ie----~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~--------------gLld~lkpfLdy-- 204 (344)
T KOG2170 145 HHFVATLHFPHASKIE----DYKEELKNRVRGTVQACQRSLFIFDEVDKLPP--------------GLLDVLKPFLDY-- 204 (344)
T ss_pred HHHHHHCCCCCHHHHH----HHHHHHHHHHHHHHHHCCCCEEEECHHHHCCH--------------HHHHHHHHHHCC--
T ss_conf 8765541599767899----99999999999999855775487310543587--------------699987666304--
Q ss_pred EECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHH
Q ss_conf 102565564322243024310001232200046789887641234333211110000000168999641----0567775
Q gi|254780271|r 221 ASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNL----ESEDLVK 296 (424)
Q Consensus 221 ~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~DL~~ 296 (424)
.+. .-.+.++..|.|--||. || +.+.++.-........ ..+......+..+... .+.-+..
T Consensus 205 ---yp~-v~gv~frkaIFIfLSN~----gg--~eI~~~aL~~~~~g~~-----re~~~l~~~E~~L~~~~~n~~~~Gl~~ 269 (344)
T KOG2170 205 ---YPQ-VSGVDFRKAIFIFLSNA----GG--SEIARIALENARNGKP-----REQLRLKSFEPALMQSAFNEKAGGLVH 269 (344)
T ss_pred ---CCC-CCCCCCCCEEEEEECCC----CC--HHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf ---632-13554551489997178----61--4779999999974797-----564526552699987553544566401
Q ss_pred HCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 2206898720784267211105789999874267799999999874498999968999999995
Q gi|254780271|r 297 FGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360 (424)
Q Consensus 297 ~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~ 360 (424)
+.|||+ ++++-.|.|=||++.+....+. +-|.-+| +.-+.+-++.||+.
T Consensus 270 S~li~~--~lid~fIPFLPLek~hV~~C~r-----------~el~~rg--~~~d~~~~erva~~ 318 (344)
T KOG2170 270 SRLISN--NLIDHFIPFLPLEKRHVRSCIR-----------AELRKRG--LAPDQDFVERVANS 318 (344)
T ss_pred CCCCHH--HHHHHCCCCCCCCHHHHHHHHH-----------HHHHHCC--CCCCHHHHHHHHHH
T ss_conf 421546--6776505767623899999999-----------9998654--65526899999986
No 125
>KOG0652 consensus
Probab=98.50 E-value=1.6e-07 Score=73.23 Aligned_cols=97 Identities=26% Similarity=0.450 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|+-+||.||.|+|||++||.-|...++-|.|.-.-.+.+ =|+|+- .+|+..|--..+.....||||||+|-|.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ-MfIGdG-----AkLVRDAFaLAKEkaP~IIFIDElDAIG 277 (424)
T KOG0652 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGDG-----AKLVRDAFALAKEKAPTIIFIDELDAIG 277 (424)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHH-HHHCCH-----HHHHHHHHHHHHCCCCEEEEEECHHHHC
T ss_conf 9972276579997577999999874010688732647776-653341-----8899999987533498389973002323
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.+....... ....||..+|.++.
T Consensus 278 tKRfDSek~---GDREVQRTMLELLN 300 (424)
T KOG0652 278 TKRFDSEKA---GDREVQRTMLELLN 300 (424)
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHH
T ss_conf 343653123---43899999999998
No 126
>KOG0726 consensus
Probab=98.49 E-value=4.4e-07 Score=70.17 Aligned_cols=97 Identities=26% Similarity=0.494 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.|+-+++.||.|+|||+||++.|.-..+-|+++--|.+-+ .|.|+- -.++|.|.+.|.. ..-+|||+||||-+.
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ-kylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiG 291 (440)
T KOG0726 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIG 291 (440)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHH----CCCCEEEEEHHHHHC
T ss_conf 9970588679997536888877245521245565089999-873655-1999999988875----298269864001104
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 23333334432102568988753105
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.+....+.+ .-..+|+.+|.++.
T Consensus 292 tKRyds~Sg---gerEiQrtmLELLN 314 (440)
T KOG0726 292 TKRYDSNSG---GEREIQRTMLELLN 314 (440)
T ss_pred CCCCCCCCC---HHHHHHHHHHHHHH
T ss_conf 521347885---07899999999987
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.48 E-value=2.5e-06 Score=64.94 Aligned_cols=97 Identities=28% Similarity=0.363 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEE-------EHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 56835884073321769999999871---85313-------1012211-111103556330357788765422776542-
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFT-------MADATTL-TEAGYVGEDVENIILKLLQAADYNVERAQR- 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~-------~vdaT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~- 179 (424)
.|+|.+|||..|||||-|+.-||..+ +||-. -.|+..+ ..+.|-|+ -|.-+..++.. ++..+.
T Consensus 207 ~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGe-FEeRlk~ii~e----i~~~~~~ 281 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE-FENRLKSVIDE----VKASPQP 281 (852)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCH-HHHHHHHHHHH----HHHCCCC
T ss_conf 479974657999879999999999997699986774385678678888640357635-99999999999----9848997
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333223332002333333443210256898875310587
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
-|+||||+--+-..... ..+-| .-|.|-..|.-+
T Consensus 282 iILFIDEiHtlvGAG~~-~G~~D-----aaNiLKPaLarG 315 (852)
T TIGR03345 282 IILFIDEAHTLIGAGGQ-AGQGD-----AANLLKPALARG 315 (852)
T ss_pred EEEEEEHHHHHCCCCCC-CCCCC-----HHHHHHHHHHCC
T ss_conf 69996348775289988-88622-----788751787378
No 128
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.47 E-value=2.6e-06 Score=64.71 Aligned_cols=147 Identities=22% Similarity=0.292 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CEEEHHH
Q ss_conf 789999974203085999999999998658875212101355225683588407332176999999987185-3131012
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-PFTMADA 146 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-PF~~vda 146 (424)
+.-...++=.-|+|||.-|.++--.. + + ..=.++|+-||-|+|||-++|.||.+|.. .-++ .|
T Consensus 8 ~~~r~~~pf~aivGqd~lk~aL~l~a------v-------~--P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc 71 (423)
T COG1239 8 EEIRENLPFTAIVGQDPLKLALGLNA------V-------D--PQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GC 71 (423)
T ss_pred HHHHHCCCHHHHCCCHHHHHHHHHHH------C-------C--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEC-CC
T ss_conf 77775166565437537778876530------2-------6--3104268766887527799999998679633216-88
Q ss_pred ------------------------HHHHHH---HHCCCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q ss_conf ------------------------211111---1035563303577887--------------65422776542233322
Q gi|254780271|r 147 ------------------------TTLTEA---GYVGEDVENIILKLLQ--------------AADYNVERAQRGIVYID 185 (424)
Q Consensus 147 ------------------------T~~TE~---GYvG~Dvesii~~L~~--------------~a~~~v~~a~~~iv~iD 185 (424)
+..++. .+|+-...+.--+|++ ...+-.-+|.+||+|+|
T Consensus 72 ~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvD 151 (423)
T COG1239 72 PFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVD 151 (423)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCEECCCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEE
T ss_conf 78899887055519998620232445422100312238876304330045679999726830027751100358879872
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHH
Q ss_conf 33320023333334432102568988753105870102565564322243024310001
Q gi|254780271|r 186 EVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNI 244 (424)
Q Consensus 186 EidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~ni 244 (424)
|+--+... +|+.||..++.+...+...|---..--+++.|-|.|=
T Consensus 152 EvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNP 196 (423)
T COG1239 152 EVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNP 196 (423)
T ss_pred CCCCCCHH--------------HHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCC
T ss_conf 33435189--------------9999999997177403357503136761799964485
No 129
>KOG0730 consensus
Probab=98.44 E-value=6.2e-06 Score=62.12 Aligned_cols=130 Identities=25% Similarity=0.347 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCC
Q ss_conf 08599999999999865887521210135522568358840733217699999998718531310122111111035563
Q gi|254780271|r 80 IGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV 159 (424)
Q Consensus 80 IGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dv 159 (424)
.|-...-.++-.+++.-.+--+ ....... -.|.++|+.||+|+|||.++|..|+-.++-|..+.+..+.. .|-|+ -
T Consensus 187 gg~~~~~~~i~e~v~~pl~~~~-~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~-k~~gE-t 262 (693)
T KOG0730 187 GGLKRQLSVIRELVELPLRHPA-LFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS-KFPGE-T 262 (693)
T ss_pred CHHHHHHHHHHHHHHHHHCCHH-HHHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHH-HCCCC-H
T ss_conf 1366778888998874301601-1443189-99987444389999818999999997372257406289998-52463-1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 3035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 160 ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 160 esii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
|+-+|+-++.+... +...++++||+|-++++...... +..+ +--.|+.+++|..
T Consensus 263 e~~LR~~f~~a~k~---~~psii~IdEld~l~p~r~~~~~---~e~R-v~sqlltL~dg~~ 316 (693)
T KOG0730 263 ESNLRKAFAEALKF---QVPSIIFIDELDALCPKREGADD---VESR-VVSQLLTLLDGLK 316 (693)
T ss_pred HHHHHHHHHHHHCC---CCCEEEEHHHHHHHCCCCCCCCH---HHHH-HHHHHHHHHHHCC
T ss_conf 77899999998665---99807758767623776433324---8889-9999999985276
No 130
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.2e-06 Score=60.93 Aligned_cols=207 Identities=21% Similarity=0.233 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-----EEEHHHHHHHHH-
Q ss_conf 30859999999999986588752121013552256835884073321769999999871853-----131012211111-
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-----FTMADATTLTEA- 152 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-----F~~vdaT~~TE~- 152 (424)
+.+-++=...++.++...++. -.|+|++..||||+|||-.++-+++.+.-+ ++-++|..+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~-----------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG-----------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHCC-----------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf 103488999999999998558-----------998607998899987328999999999733156757999513078787
Q ss_pred ----------H---HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf ----------1---035563303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 153 ----------G---YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 153 ----------G---YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
| .-|.....+...+.+.- .+....-||.+||+|.+..+.. +.|+.++.-.
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~---~~~~~~~IvvLDEid~L~~~~~--------------~~LY~L~r~~ 150 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNL---SKKGKTVIVILDEVDALVDKDG--------------EVLYSLLRAP 150 (366)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH---HHCCCEEEEEECCHHHHHCCCC--------------CHHHHEECCC
T ss_conf 9999999982689976763268999999977---7418759999764765415464--------------1455111247
Q ss_pred EEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 01025655643222430243100012322000467898876412343332111100000001689996410567775220
Q gi|254780271|r 220 IASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 (424)
Q Consensus 220 ~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gl 299 (424)
... ......|-.+|-. .+ ..-|
T Consensus 151 ~~~----------~~~v~vi~i~n~~--------------------------------------~~----------~~~l 172 (366)
T COG1474 151 GEN----------KVKVSIIAVSNDD--------------------------------------KF----------LDYL 172 (366)
T ss_pred CCC----------CEEEEEEEEECCH--------------------------------------HH----------HHHH
T ss_conf 767----------5379999973548--------------------------------------89----------9987
Q ss_pred HHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 6898720784-267211105789999874267799999999874498999968999999995510678742368999999
Q gi|254780271|r 300 IPEFIGRLPV-LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI 378 (424)
Q Consensus 300 iPEl~GRlPi-iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i 378 (424)
-|=...||.- .+.|.|-+.++++.||.+-.+. .| .+-.+++++++.+|..+....=-||.---++...
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~-------~~----~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEE-------GF----SAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH-------HH----CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 566765068763552898989999999999985-------40----4687480399999998876186477608999999
Q ss_pred HHHH
Q ss_conf 6777
Q gi|254780271|r 379 LLDT 382 (424)
Q Consensus 379 Ledi 382 (424)
.+=.
T Consensus 242 ~eiA 245 (366)
T COG1474 242 GEIA 245 (366)
T ss_pred HHHH
T ss_conf 9986
No 131
>PRK08116 hypothetical protein; Validated
Probab=98.40 E-value=4.9e-06 Score=62.84 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=92.9
Q ss_pred CCEEEECCCCCCHHHHHCCCCCCC---CEECH-HHHH-HHHHHHHHHHHHHCCHH----C-CCCCCHHHHHHHHHHHCC-
Q ss_conf 672561689888657422113899---13431-7999-99999898742100000----0-269987899999742030-
Q gi|254780271|r 12 KNALYCSFCGKSQHEVRKLIAGPT---VFICD-ECVE-LCMDIIREENKSSITKS----H-EGIPNPQEILRVLDEYVI- 80 (424)
Q Consensus 12 ~~~~~CsfCg~~~~~v~~li~g~~---~~iC~-~Ci~-~~~~i~~~e~~~~~~~~----~-~~~~tP~eI~~~Ld~yVI- 80 (424)
...++|..||+.......-+.-.+ .+.|. +|.. .+..-.+++........ . .....++-...-++.|.+
T Consensus 5 ~~~~~c~~Cg~~~~~~~~~~~~~g~~~~~~~~C~C~~~~~~~~~~~~~~~~~q~ri~rl~~~s~i~~~f~~~tFeN~~~~ 84 (262)
T PRK08116 5 EEGYYCEVCGKCIEAITVEVPQLGRKRKIPPMCECKREREEAKIEEEENKEKQLRLERLISNSLLDEKFRNSTFENWLFR 84 (262)
T ss_pred CCCEECCCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
T ss_conf 48814788898689738986356466457978878399999999999999999999999986599988981922255689
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHH---HH
Q ss_conf -859999999999986588752121013552256835884073321769999999871---85313101221111---11
Q gi|254780271|r 81 -GQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTE---AG 153 (424)
Q Consensus 81 -GQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE---~G 153 (424)
||..|.+ +|...-++|..+. . ....+||.||+|+|||.||-.+|+.+ +.+-+-+.++.|.. ..
T Consensus 85 ~~~~~a~~-~a~~Y~~~f~~~~------~---~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~ 154 (262)
T PRK08116 85 KGSEKAYK-VAVKYVKKFEEMK------K---ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKST 154 (262)
T ss_pred CCHHHHHH-HHHHHHHHHHHHC------C---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH
T ss_conf 52599999-9999999898736------4---686189989899989999999999999879939998899999999999
Q ss_pred HCCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
Q ss_conf 0355--633-0357788765422776542233322333200233333344321025689887531058701025655643
Q gi|254780271|r 154 YVGE--DVE-NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRK 230 (424)
Q Consensus 154 YvG~--Dve-sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk 230 (424)
|-.. +-+ .++..+. ...++.||++-+. ...+.++..|+.+++....+
T Consensus 155 ~~~~~~~~~~e~l~~l~----------~~dLLIiDDlG~e------------~~t~w~~e~lf~IIn~Ry~~-------- 204 (262)
T PRK08116 155 YNSEGKEDENEIIRALD----------NADLLILDDLGAE------------KDTEWVREKLYNIIDSRYRK-------- 204 (262)
T ss_pred HHCCCCHHHHHHHHHHH----------CCCEEEEEHHCCC------------CCCHHHHHHHHHHHHHHHHC--------
T ss_conf 86356101999999861----------2998998322145------------69878999999999999976--------
Q ss_pred CCCCCEEEEECCHHH
Q ss_conf 222430243100012
Q gi|254780271|r 231 HPQQEFLQVDTTNIL 245 (424)
Q Consensus 231 ~~~~~~~~Idt~nil 245 (424)
..-+|-|+|..
T Consensus 205 ----~kptIiTTNl~ 215 (262)
T PRK08116 205 ----GLPTIFTTNLS 215 (262)
T ss_pred ----CCCEEEECCCC
T ss_conf ----99989987999
No 132
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.35 E-value=6.8e-07 Score=68.84 Aligned_cols=115 Identities=26% Similarity=0.281 Sum_probs=72.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE---------------
Q ss_conf 03085999999999998658875212101355225683588407332176999999987185313---------------
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT--------------- 142 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~--------------- 142 (424)
.++|++++.+.+-..++.+ .+ .|..+||.||.|+|||..|..||+.+.-...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-~~------------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~ 68 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-GR------------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI 68 (325)
T ss_pred CCCCCHHHHHHHHHHHHHC-CC------------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 6433235899999999865-88------------8761003799999789999999999658664334552002244432
Q ss_pred ----EHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf ----1012211111103556-33035778876542277654223332233320023333334432102568988753105
Q gi|254780271|r 143 ----MADATTLTEAGYVGED-VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 143 ----~vdaT~~TE~GYvG~D-vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.-|...++..+.-+.| +...++++.+.....-....+-+|++||+|++.. ..+|+||+.+|
T Consensus 69 ~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------------~A~nallk~lE 134 (325)
T COG0470 69 PAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLE 134 (325)
T ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH--------------HHHHHHHHHCC
T ss_conf 0256886599773213333006999999998604465667726999732032698--------------88876754332
Q ss_pred CC
Q ss_conf 87
Q gi|254780271|r 218 GT 219 (424)
Q Consensus 218 g~ 219 (424)
..
T Consensus 135 ep 136 (325)
T COG0470 135 EP 136 (325)
T ss_pred CC
T ss_conf 48
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.30 E-value=7.5e-07 Score=68.53 Aligned_cols=115 Identities=29% Similarity=0.460 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHH
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-------313101221111
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTE 151 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE 151 (424)
||||+.-.++++.|+-|. |+ ..-.||.||-|||||-+||.+||-+|- |...+..-+=.+
T Consensus 18 vvGQe~v~~~L~nal~~~--ri------------~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 18 VVGQEHVVKTLSNALENG--RI------------AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HCCCHHHHHHHHHHHHHC--CC------------HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 636489999999999808--42------------3336513777767104999999995688987777225316668651
Q ss_pred HH-HCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 11-035---------56330357788765422776542233322333200233333344321025689887531058701
Q gi|254780271|r 152 AG-YVG---------EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIA 221 (424)
Q Consensus 152 ~G-YvG---------~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~ 221 (424)
.| |+- .-|+ -+|++.+...+.--+..+-+..|||+.-++.. .+|+|||.+|..--
T Consensus 84 ~g~~~DviEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------------afNALLKTLEEPP~ 148 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLEEPPS 148 (515)
T ss_pred CCCCCCCHHHHHHHCCCHH-HHHHHHHHHCCCCCCCCCEEEEEECHHHHHHH--------------HHHHHHCCCCCCCC
T ss_conf 4886410113644454867-99999987246886666418998318764378--------------88887511136866
Q ss_pred E
Q ss_conf 0
Q gi|254780271|r 222 S 222 (424)
Q Consensus 222 ~ 222 (424)
+
T Consensus 149 h 149 (515)
T COG2812 149 H 149 (515)
T ss_pred C
T ss_conf 7
No 134
>KOG0739 consensus
Probab=98.29 E-value=3.7e-06 Score=63.65 Aligned_cols=163 Identities=25% Similarity=0.389 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 9878999997420------------3085999999999998658875212101355225683588407332176999999
Q gi|254780271|r 66 PNPQEILRVLDEY------------VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL 133 (424)
Q Consensus 66 ~tP~eI~~~Ld~y------------VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~L 133 (424)
|--+.+.+.|..- |-|-+-||.|+--||-=-.+=-| .....+. .=+-|||.||.|+||.+||+..
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPq-lFtGkR~--PwrgiLLyGPPGTGKSYLAKAV 186 (439)
T KOG0739 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQ-LFTGKRK--PWRGILLYGPPGTGKSYLAKAV 186 (439)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHEEECCCCHH-HHCCCCC--CCEEEEEECCCCCCHHHHHHHH
T ss_conf 668999987530220038997623301405689998754350002535-4158877--5425788679997577999998
Q ss_pred HHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98718531310122111111035563303577887654227765422333223332002333333443210256898875
Q gi|254780271|r 134 ARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALL 213 (424)
Q Consensus 134 Ak~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LL 213 (424)
|--.+.-|.-|-.+-+.. .|.|+. |..+..|.+ +.+...-+|||+||||-.+... +.....+...+.-.+|
T Consensus 187 ATEAnSTFFSvSSSDLvS-KWmGES-EkLVknLFe----mARe~kPSIIFiDEiDslcg~r---~enEseasRRIKTEfL 257 (439)
T KOG0739 187 ATEANSTFFSVSSSDLVS-KWMGES-EKLVKNLFE----MARENKPSIIFIDEIDSLCGSR---SENESEASRRIKTEFL 257 (439)
T ss_pred HHHCCCCEEEEEHHHHHH-HHHCCH-HHHHHHHHH----HHHHCCCCEEEEEHHHHHCCCC---CCCCHHHHHHHHHHHH
T ss_conf 741477068730178899-873217-999999999----9873499479863444432688---7771177777777888
Q ss_pred HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHC
Q ss_conf 3105870102565564322243024310001232200
Q gi|254780271|r 214 KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGG 250 (424)
Q Consensus 214 kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~g 250 (424)
-.|.|-. +..+.....-.+||-+..-.
T Consensus 258 VQMqGVG----------~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739 258 VQMQGVG----------NDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHHHCCC----------CCCCCEEEEECCCCCHHHHH
T ss_conf 7640666----------58886489723788436779
No 135
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-05 Score=59.29 Aligned_cols=101 Identities=32% Similarity=0.451 Sum_probs=65.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEH-------HHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871---8531310-------12211-1111035563303577887654227765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFTMA-------DATTL-TEAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~v-------daT~~-TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
.|+|-+|||+-|||||-|+.-||.-. +||-..- |+..+ .-++|-|+ -|.-+..++. .+++++.-
T Consensus 190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe-FEeRlk~vl~----ev~~~~~v 264 (786)
T COG0542 190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE-FEERLKAVLK----EVEKSKNV 264 (786)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCC-HHHHHHHHHH----HHHCCCCE
T ss_conf 889984766898889999989999974699997875887997148767464653573-8999999999----98517984
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 333223332002333333443210256898875310587010
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIAS 222 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~ 222 (424)
|+||||+..+-......+..-| .-|.|...|.-+...
T Consensus 265 ILFIDEiHtiVGAG~~~g~a~D-----AaNiLKPaLARGeL~ 301 (786)
T COG0542 265 ILFIDEIHTIVGAGATEGGAMD-----AANLLKPALARGELR 301 (786)
T ss_pred EEEEECHHHHCCCCCCCCCCCC-----HHHHHHHHHHCCCEE
T ss_conf 9998235540577766666512-----566467787458737
No 136
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.25 E-value=1.5e-06 Score=66.49 Aligned_cols=81 Identities=27% Similarity=0.351 Sum_probs=52.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEHHHHHHHHHHHC--------CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871853---131012211111103--------55633035778876542277654223
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVP---FTMADATTLTEAGYV--------GEDVENIILKLLQAADYNVERAQRGI 181 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~P---F~~vdaT~~TE~GYv--------G~Dvesii~~L~~~a~~~v~~a~~~i 181 (424)
+.+++++||+|||||.+++.||..+..+ ++.+++...++.-+. .....+......+......++....+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 97899999997029999999998726689968998759989888987653000112210519999999999998449989
Q ss_pred HHHHHHHHHCCC
Q ss_conf 332233320023
Q gi|254780271|r 182 VYIDEVDKISRK 193 (424)
Q Consensus 182 v~iDEidKi~~~ 193 (424)
+++||++.....
T Consensus 82 iiiDei~~~~~~ 93 (148)
T smart00382 82 LILDEITSLLDA 93 (148)
T ss_pred EEEECCHHHCCC
T ss_conf 998275021476
No 137
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.25 E-value=3.5e-06 Score=63.81 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=79.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHH
Q ss_conf 899999742030859999999999986588752121013552256835884073321769999999871-8531310122
Q gi|254780271|r 69 QEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-DVPFTMADAT 147 (424)
Q Consensus 69 ~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT 147 (424)
..+...|.+.++.-+++-|.+-.|+ +.-.++||+||.|++|++|||+|+..+ ++.|---=+|
T Consensus 12 ~~l~~~L~~gl~ERe~~i~l~lLaa-----------------lagehvlllGPPGtAKS~larrl~~~~~~a~~FeyLlt 74 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAA-----------------LSGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMT 74 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999701144699999999999-----------------72894698889951388999999998557408999987
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 111111035563303577887654227----76542233322333200233333344321025689887531058
Q gi|254780271|r 148 TLTEAGYVGEDVENIILKLLQAADYNV----ERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 148 ~~TE~GYvG~Dvesii~~L~~~a~~~v----~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
+||+..-+=-.++ |..|-+...+.. .--.-.++|+|||=| ++..+.|.||.++..
T Consensus 75 RFstPeElFGP~s--i~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfK--------------ansAILNtLLtilNE 133 (498)
T PRK13531 75 RFSTPEEVFGPLS--IQALKDEGRYERLTSGYLPEAEIVFLDEIWK--------------AGPAILNTLLTAINE 133 (498)
T ss_pred CCCCHHHHCCCCC--HHHHHHCCEEEEECCCCCCCCEEEHHHHHHH--------------CCHHHHHHHHHHHHH
T ss_conf 4698888538332--9987117848972267588661315787861--------------488999999998646
No 138
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.24 E-value=1e-05 Score=60.62 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=52.8
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECHHHHHHHHHHHHHCCCC-CHHHHHHHHH
Q ss_conf 898720784267211105789999874267799999999874498--9999689999999955106787-4236899999
Q gi|254780271|r 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDV--ELVFHEDALREIARCAIAHKTG-ARGLRSILEK 377 (424)
Q Consensus 301 PEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV--~L~FtdeAi~~IA~~A~~~niG-AR~LrtIiE~ 377 (424)
+-|--|+-.++.|.||+.++...-+. + -++.-|. ...||++|++.|.+.+- | -|....++.+
T Consensus 177 ~~l~qRI~~~~~L~pl~~eet~~YI~---~--------RL~~AG~~~~~~Ft~~A~~~I~~~S~----G~PR~IN~Lc~~ 241 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE---H--------RLERAGNRDAPVFSEGAFDAIHRFSR----GIPRLINILCDR 241 (269)
T ss_pred HHHHHCEEEEEEECCCCHHHHHHHHH---H--------HHHHCCCCCCCCCCHHHHHHHHHHCC----CCHHHHHHHHHH
T ss_conf 54555076799847999899999999---9--------99866999999859999999999869----900899999999
Q ss_pred HHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf 967774027678984199983778558
Q gi|254780271|r 378 ILLDTMFELPMLKGVSSVIISDDVVKG 404 (424)
Q Consensus 378 iLedimFe~P~~~~~~~v~Id~~~V~~ 404 (424)
.|.-..-+ .+=.||.+.|+.
T Consensus 242 aLl~a~~~-------~~~~I~~~~v~~ 261 (269)
T TIGR03015 242 LLLSAFLE-------EKREIGGEEVRE 261 (269)
T ss_pred HHHHHHHH-------CCCCCCHHHHHH
T ss_conf 99999994-------888679999999
No 139
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.24 E-value=7.2e-06 Score=61.68 Aligned_cols=240 Identities=22% Similarity=0.261 Sum_probs=132.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHC
Q ss_conf 42030859999999999986588752121013552256835884073321769999999871853131012211111103
Q gi|254780271|r 76 DEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV 155 (424)
Q Consensus 76 d~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYv 155 (424)
---|.|-++-|||++-++.--.+.........+-+ .||||+|=.|+||+.|-|.+++++.-- +-+....-|.+|.-
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGD---InILLvGDPgtaKSqlLk~v~~~aPr~-vytsgkgss~~GLT 360 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGD---IHILLVGDPGTAKSQLLKYVAKLAPRG-VYTSGKGSSAAGLT 360 (682)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---EEEEECCCCCHHHHHHHHHHHHHCCCE-EEECCCCCCCCCCE
T ss_conf 15103819999999999608976647998620242---269981798251999999988648840-79726412545730
Q ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 5---5633035778876542277654223332233320023333334432102568988753105870102565564322
Q gi|254780271|r 156 G---EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP 232 (424)
Q Consensus 156 G---~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~ 232 (424)
. +|.. .. +-+ .-.+..-.|-.|+.+|||+||... ..+.++...||--.+++...
T Consensus 361 Aav~rd~~-tg-e~~-LeaGALVlAD~Gv~cIDEfdKm~~--------------~dr~aihEaMEQQtIsIaKA------ 417 (682)
T COG1241 361 AAVVRDKV-TG-EWV-LEAGALVLADGGVCCIDEFDKMNE--------------EDRVAIHEAMEQQTISIAKA------ 417 (682)
T ss_pred EEEEECCC-CC-EEE-EECCEEEEECCCEEEEEECCCCCH--------------HHHHHHHHHHHHCEEEECCC------
T ss_conf 69997067-76-078-867779992497799970567776--------------78999999987527512055------
Q ss_pred CCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEE
Q ss_conf 24302431000123220004678988764123433321111000000016899964105677752206898720784267
Q gi|254780271|r 233 QQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLAT 312 (424)
Q Consensus 233 ~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~ 312 (424)
.++.|-|..--...|- ...||-- ..... +.+ .-+|-|-|+-||+.+..
T Consensus 418 ----GI~atLnARcsvLAAa--------------NP~~Gry---d~~~~---~~e--------nI~l~~~lLSRFDLifv 465 (682)
T COG1241 418 ----GITATLNARCSVLAAA--------------NPKFGRY---DPKKT---VAE--------NINLPAPLLSRFDLIFV 465 (682)
T ss_pred ----CEEEECCHHHHHHHHH--------------CCCCCCC---CCCCC---HHH--------HCCCCHHHHHHCCEEEE
T ss_conf ----4254111444456651--------------8877767---99999---788--------55898357751775477
Q ss_pred ECCC-----CHHHHHHHHHHH--------------------HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CC-
Q ss_conf 2111-----057899998742--------------------67799999999874498999968999999995510-67-
Q gi|254780271|r 313 LEDL-----DENSLIRILSEP--------------------KNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HK- 365 (424)
Q Consensus 313 L~~L-----t~edl~rILtep--------------------knsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~n- 365 (424)
+..- +++-...||..- ...+++.|...-.. .+.-..|++|.+.|.+.=.+ ++
T Consensus 466 l~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~-~v~P~lt~ea~e~l~~~Yv~~Rk~ 544 (682)
T COG1241 466 LKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARK-NVTPVLTEEAREELEDYYVEMRKK 544 (682)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 0578885335999999999863456532233332222234658999999998750-589612899999999999876520
Q ss_pred -----------CCCHHHHHHH
Q ss_conf -----------8742368999
Q gi|254780271|r 366 -----------TGARGLRSIL 375 (424)
Q Consensus 366 -----------iGAR~LrtIi 375 (424)
+=||-|-+++
T Consensus 545 ~~~~~~~~~~piT~RqLEsii 565 (682)
T COG1241 545 SALVEEKRTIPITARQLESII 565 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHH
T ss_conf 122345675456199999999
No 140
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.22 E-value=1.8e-05 Score=58.94 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=104.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHH
Q ss_conf 9974203085999999999998658875212101355225683-588407332176999999987185---313101221
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSN-ILLVGPTGCGKTYLAQTLARIIDV---PFTMADATT 148 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~ 148 (424)
.-+|.||+|. ...+++ ++.+-|.. . ..| +.+.||+|+|||.|++.++..+.. ..+-+++..
T Consensus 12 ~tfdnFi~~~--N~~~~~-~l~~~~~~------~------~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~ 76 (226)
T TIGR03420 12 PTFDNFYAGG--NAELLA-ALRQLAAG------K------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCHHCCCCCC--HHHHHH-HHHHHHHC------C------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHH
T ss_conf 7631236586--799999-99987646------6------8886999899999889999999999862699579952999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 11111035563303577887654227765422333223332002333333443210256898875310587010256556
Q gi|254780271|r 149 LTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGG 228 (424)
Q Consensus 149 ~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~g 228 (424)
++.. + .+.++ .-.....+++|.++.+..+. ..|..|+.++..-..
T Consensus 77 ~~~~-----~-----~~~l~------~l~~~d~l~iDDi~~i~~~~------------~~e~~lF~l~N~~~~------- 121 (226)
T TIGR03420 77 LAQA-----D-----PEVLE------GLEQADLVCLDDVEAIAGQP------------EWQEALFHLYNRVRE------- 121 (226)
T ss_pred HHHH-----H-----HHHHH------HCCCCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHHH-------
T ss_conf 8775-----3-----99997------27448999996633343783------------789999999999986-------
Q ss_pred CCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC-
Q ss_conf 4322243024310001232200046789887641234333211110000000168999641056777522068987207-
Q gi|254780271|r 229 RKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL- 307 (424)
Q Consensus 229 rk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl- 307 (424)
.....+-|++. .|.++. ...|.|..||
T Consensus 122 -----~~~~ilits~~---------------------------------------------~p~~l~--~~l~dL~SRl~ 149 (226)
T TIGR03420 122 -----AGGRLLIAGRA---------------------------------------------APAQLP--LRLPDLRTRLA 149 (226)
T ss_pred -----HCCEEEEECCC---------------------------------------------CHHHCC--CCHHHHHHHHH
T ss_conf -----52828986788---------------------------------------------823203--20177999996
Q ss_pred -CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf -842672111057899998742677999999998744989999689999999955106787423689999996777
Q gi|254780271|r 308 -PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 308 -PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
-..+++++++.+.+..||. +.+...|+ .++++++++|++.- +++ .|-|..+++++-...
T Consensus 150 ~~~~~~I~~pdd~~~~~iL~-----------k~~~~r~i--~i~~~vi~yl~~r~-~R~--~~~l~~~l~~Ld~~s 209 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQ-----------SRAARRGL--QLPDEVADYLLRHG-SRD--MGSLMALLDALDRAS 209 (226)
T ss_pred CCCEEECCCCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHC-CCC--HHHHHHHHHHHHHHH
T ss_conf 88568527999999999999-----------99998599--88999999999863-798--999999999999999
No 141
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.20 E-value=4.8e-05 Score=55.86 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=109.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC--CC---EEEHHHHH
Q ss_conf 74203085999999999998658875212101355225683-58840733217699999998718--53---13101221
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSN-ILLVGPTGCGKTYLAQTLARIID--VP---FTMADATT 148 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~--~P---F~~vdaT~ 148 (424)
.|.||||... ..|++...+|-+ ++. .+-| +++-||+|+|||.|.+.++.-+. .| .+-..+..
T Consensus 7 FdnF~vg~~N---~~a~~~~~~i~~--~~~-------~~~npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~ 74 (219)
T pfam00308 7 FENFVIGSSN---RFAHAAALAVAE--APG-------KAYNPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEE 74 (219)
T ss_pred CCCCCCCCCH---HHHHHHHHHHHH--CCC-------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 1020236838---999999999996--758-------7678269988999988899999999999849998288843999
Q ss_pred HHHHHH---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 111110---35563303577887654227765422333223332002333333443210256898875310587010256
Q gi|254780271|r 149 LTEAGY---VGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPP 225 (424)
Q Consensus 149 ~TE~GY---vG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~ 225 (424)
|+..-. ...+.+... -+-.....+++|.++.++.+ +..|..|+.++.... .
T Consensus 75 ~~~~~~~~l~~~~~~~f~----------~~l~~~d~l~iDDi~~l~~~------------~~~ee~lf~l~N~~~----~ 128 (219)
T pfam00308 75 FLNDFVDALRDNKIEAFK----------KSYRNVDLLLIDDIQFLAGK------------EKTQEEFFHTFNALH----E 128 (219)
T ss_pred HHHHHHHHHHCCCHHHHH----------HHHHHCCHHHHCCHHHHCCC------------HHHHHHHHHHHHHHH----H
T ss_conf 999889999818888999----------99763233652236765686------------478999999999999----7
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 55643222430243100012322000467898876412343332111100000001689996410567775220689872
Q gi|254780271|r 226 QGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIG 305 (424)
Q Consensus 226 ~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~G 305 (424)
.....+.|++. .|.++. ++.|-|..
T Consensus 129 --------~~~~lllts~~---------------------------------------------~p~~l~--~~~~dL~S 153 (219)
T pfam00308 129 --------NNKQIVLTSDR---------------------------------------------PPKELE--GFEDRLRS 153 (219)
T ss_pred --------CCCEEEEECCC---------------------------------------------CCCCCC--CCCHHHHH
T ss_conf --------29869997799---------------------------------------------810024--53277999
Q ss_pred CC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 07--8426721110578999987426779999999987449899996899999999551067874236899999967774
Q gi|254780271|r 306 RL--PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTM 383 (424)
Q Consensus 306 Rl--PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedim 383 (424)
|| -..+.+++++.++...||. ..++..|+. .+++++++|++.--. --|-|-.+++++---.+
T Consensus 154 RL~~g~~~~i~~pdd~~~~~iL~-----------~~a~~r~l~--l~~~v~~yl~~r~~R---~~r~L~~~L~~L~~~~~ 217 (219)
T pfam00308 154 RFEWGLIIAIEPPDLETRLAILR-----------KKAEEENIN--IPNEVLNFIAQRITD---NVRELEGALNRLLAFAS 217 (219)
T ss_pred HHHCCEEEECCCCCHHHHHHHHH-----------HHHHHCCCC--CCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHC
T ss_conf 98687566116999999999999-----------999984999--999999999984279---89999999999998550
No 142
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.16 E-value=1.7e-05 Score=59.10 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=118.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH--HCCCEEEHHHHHHHHH-------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 683588407332176999999987--1853131012211111-------1035563303577887654227765422333
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARI--IDVPFTMADATTLTEA-------GYVGEDVENIILKLLQAADYNVERAQRGIVY 183 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~--l~~PF~~vdaT~~TE~-------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~ 183 (424)
..-+|+-|-||+||-.+||.+-+- ...||+-+.|-.++|. ||++-+-..--+... .+.++.|..|.+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~---~g~~~~A~gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGY---KGKLEQADGGTLF 412 (606)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCC---CCCCEECCCCCCH
T ss_conf 7876853876556899999998536556983799850344776467774457656433001066---5541015787608
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 22333200233333344321025689887531058701025655643222430243100012322000467898876412
Q gi|254780271|r 184 IDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARG 263 (424)
Q Consensus 184 iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~ 263 (424)
+|||..+.- ..|-.||+++..+ .|.|-||.+ ..-+...|-+++- .|...+
T Consensus 413 ldeIgd~p~--------------~~Qs~LLrVl~e~--~v~p~g~~~-~~vdirvi~ath~---------dl~~lv---- 462 (606)
T COG3284 413 LDEIGDMPL--------------ALQSRLLRVLQEG--VVTPLGGTR-IKVDIRVIAATHR---------DLAQLV---- 462 (606)
T ss_pred HHHHHHCHH--------------HHHHHHHHHHHHC--CEECCCCCC-EEEEEEEEECCCC---------CHHHHH----
T ss_conf 987611418--------------9999999998618--252358852-1577999834675---------799998----
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 343332111100000001689996410567775220689872078-4267211105-78999987426779999999987
Q gi|254780271|r 264 EKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-VLATLEDLDE-NSLIRILSEPKNALIKQYQCLFD 341 (424)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~-edl~rILtepknsLikQy~~Ll~ 341 (424)
.++. |.-.|-=||- -+++|-||.+ .|..-.| ..+.+|+.
T Consensus 463 -----------------------~~g~--------fredLyyrL~~~~i~lP~lr~R~d~~~~l----~~~~~~~~---- 503 (606)
T COG3284 463 -----------------------EQGR--------FREDLYYRLNAFVITLPPLRERSDRIPLL----DRILKREN---- 503 (606)
T ss_pred -----------------------HCCC--------CHHHHHHHHCCEEECCCCHHCCCCCHHHH----HHHHHHCC----
T ss_conf -----------------------7597--------14878887447155068611046657899----99998726----
Q ss_pred HCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 44989999689999999955106787423689999996
Q gi|254780271|r 342 MEDVELVFHEDALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 342 ~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
+..|..+++|+..+-...|--|+ |-|++|+|.+-
T Consensus 504 --~~~~~l~~~~~~~l~~~~WPGNi--rel~~v~~~~~ 537 (606)
T COG3284 504 --DWRLQLDDDALARLLAYRWPGNI--RELDNVIERLA 537 (606)
T ss_pred --CCCCCCCHHHHHHHHHCCCCCCH--HHHHHHHHHHH
T ss_conf --87756899999999857899828--99999999998
No 143
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.16 E-value=6.9e-05 Score=54.78 Aligned_cols=99 Identities=25% Similarity=0.404 Sum_probs=61.5
Q ss_pred HCCCHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-------CCC-E--EEHHH
Q ss_conf 030859999999999986588-752121013552256835884073321769999999871-------853-1--31012
Q gi|254780271|r 78 YVIGQGQAKKVLAVAVHNHYK-RLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-------DVP-F--TMADA 146 (424)
Q Consensus 78 yVIGQ~~AKkavAvAv~nh~r-R~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-------~~P-F--~~vda 146 (424)
.|+|=|+=-..+|-+|.-=.+ . -.|+||++-||||||||..++-+.+.| +++ | +.++|
T Consensus 18 ~i~hRdeqI~~l~~~L~~~l~PG-----------~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC 86 (383)
T TIGR02928 18 RIVHRDEQIEELAKALRPILRPG-----------SRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINC 86 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCC-----------CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 46686789999999988750674-----------8987258878889878899999999999986226997158999778
Q ss_pred HHHH-----------HH--HHCCCCCC-------CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHC
Q ss_conf 2111-----------11--10355633-------035778876542277--6542233322333200
Q gi|254780271|r 147 TTLT-----------EA--GYVGEDVE-------NIILKLLQAADYNVE--RAQRGIVYIDEVDKIS 191 (424)
Q Consensus 147 T~~T-----------E~--GYvG~Dve-------sii~~L~~~a~~~v~--~a~~~iv~iDEidKi~ 191 (424)
..+. +. +-.|..|- .+.+.|.. -+. ....-||.|||||++.
T Consensus 87 ~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~----~l~~~~~~~~~ivLDEiD~Lv 149 (383)
T TIGR02928 87 QILDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYK----ELNRERGDSLIIVLDEIDKLV 149 (383)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHCCCEEEEEECCCCHHH
T ss_conf 546846999999999851577888898877878999999999----983201887999862310221
No 144
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.16 E-value=7.8e-06 Score=61.41 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCC
Q ss_conf 987899999742030859999999999986588752121013552256835884073321769999999871-----853
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----DVP 140 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----~~P 140 (424)
+....+...|++.+.||.-|++.|.-||..|+.- ..+ +..+ =+-|-||||+||+.+||-||+-+ +.+
T Consensus 14 ~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~-~~p----~KpL---VlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~ 85 (127)
T pfam06309 14 FNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN-PKP----RKPL---VLSFHGWTGTGKNFVAEIIADNLYRDGLRSP 85 (127)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCC----CCCE---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8779999999875347798999999999999748-999----9974---8870189998798999999999875434787
Q ss_pred EEEH
Q ss_conf 1310
Q gi|254780271|r 141 FTMA 144 (424)
Q Consensus 141 F~~v 144 (424)
|+..
T Consensus 86 ~Vh~ 89 (127)
T pfam06309 86 YVHH 89 (127)
T ss_pred CEEE
T ss_conf 5688
No 145
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.10 E-value=6.3e-05 Score=55.05 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=125.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH-
Q ss_conf 2030859999999999986588752121013552256835884073321769999999871---853131012211111-
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA- 152 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~- 152 (424)
.-||||..|-+.+--.+ ..+- -..+|+|+.|-||+||-.+||++-++. +-||+++.|..+-|.
T Consensus 223 ~~iIG~S~am~~ll~~i----~~VA---------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 223 GGIIGRSPAMRQLLKEI----EVVA---------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred CCCCCCCHHHHHHHHHH----HHHH---------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 56230699999999999----9872---------6898079845888538999999987375557986663122253788
Q ss_pred ------HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf ------10355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 153 ------GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 153 ------GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
||+---- ..-+..-.+.-|.|-.|.+|+|||-.+... +|--||+++-.++. ..-
T Consensus 290 lESELFGHeKGAF----TGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEi--eRv 349 (550)
T COG3604 290 LESELFGHEKGAF----TGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEI--ERV 349 (550)
T ss_pred HHHHHHCCCCCCC----CCCHHCCCCCEEECCCCEEECHHHCCCCHH--------------HHHHHHHHHHHCCE--EEC
T ss_conf 8888745332233----351014676356557975760220367877--------------88999999863652--534
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
||.+ .+.||..=| +..+ -.|.+.+... . |..-|-=|
T Consensus 350 G~~r-----~ikVDVRiI---AATN-RDL~~~V~~G------~-----------------------------FRaDLYyR 385 (550)
T COG3604 350 GGDR-----TIKVDVRVI---AATN-RDLEEMVRDG------E-----------------------------FRADLYYR 385 (550)
T ss_pred CCCC-----EEEEEEEEE---ECCC-HHHHHHHHCC------C-----------------------------CHHHHHHC
T ss_conf 7996-----367778998---2135-3099998749------5-----------------------------15545321
Q ss_pred CCCE-EEECCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 7842-67211105--789999874267799999999874498-9999689999999955106787423689999996777
Q gi|254780271|r 307 LPVL-ATLEDLDE--NSLIRILSEPKNALIKQYQCLFDMEDV-ELVFHEDALREIARCAIAHKTGARGLRSILEKILLDT 382 (424)
Q Consensus 307 lPii-V~L~~Lt~--edl~rILtepknsLikQy~~Ll~~egV-~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedi 382 (424)
|.+. ..+-||-+ +|.-- | -...++|...- .|. .+.|+.+|++.+-+..|--| .|-|..++|+...=.
T Consensus 386 LsV~Pl~lPPLRER~~DIpl-L---A~~Fle~~~~~---~gr~~l~ls~~Al~~L~~y~wPGN--VRELen~veRavlla 456 (550)
T COG3604 386 LSVFPLELPPLRERPEDIPL-L---AGYFLEKFRRR---LGRAILSLSAEALELLSSYEWPGN--VRELENVVERAVLLA 456 (550)
T ss_pred CCCCCCCCCCCCCCCCCHHH-H---HHHHHHHHHHH---CCCCCCCCCHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHC
T ss_conf 02001378983458866799-9---99999999886---397640339899999973999971--999998999999970
No 146
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=6.4e-05 Score=55.02 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=101.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHH---CCCEEEHHHH
Q ss_conf 9997420308599999999999865887521210135522568358-84073321769999999871---8531310122
Q gi|254780271|r 72 LRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARII---DVPFTMADAT 147 (424)
Q Consensus 72 ~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NIL-liGPTGvGKTelAr~LAk~l---~~PF~~vdaT 147 (424)
..-+|.||+|...+- ++.+ +++-.. ... .+.|.| +-||+|+|||.|.+.++..+ +.+.+-+.+.
T Consensus 15 ~~tfdnFi~g~N~~a--~~~~-----~~l~~~--~~~---~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~ 82 (234)
T PRK05642 15 DATFANYYPGANAAA--LGYV-----ERLCEA--DAG---WTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCHHCCCCCCCHHH--HHHH-----HHHHHC--CCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 777303571875999--9999-----998760--678---7788389988999988999999999998079967997899
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 11111103556330357788765422776542233322333200233333344321025689887531058701025655
Q gi|254780271|r 148 TLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQG 227 (424)
Q Consensus 148 ~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~ 227 (424)
.+.+-+ ++ ++ +- ......+++|-++.++.+. ..|.+|..++..-..
T Consensus 83 ~~~~~~-----~~-~~-~~---------l~~~d~l~IDDi~~i~g~~------------~~e~~lF~l~N~~~~------ 128 (234)
T PRK05642 83 ELLDRG-----PE-LL-DN---------LEQYELVCIDDLDVIAGKA------------DWEEALFHLFNRLRD------ 128 (234)
T ss_pred HHHHHH-----HH-HH-HH---------HHHCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHHH------
T ss_conf 987544-----99-98-62---------4227989893645546885------------999999999999998------
Q ss_pred CCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC
Q ss_conf 64322243024310001232200046789887641234333211110000000168999641056777522068987207
Q gi|254780271|r 228 GRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL 307 (424)
Q Consensus 228 grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl 307 (424)
.....+.|++. .|.++. ...|.|.-||
T Consensus 129 ------~~~~llits~~---------------------------------------------~P~~l~--~~l~DL~SRl 155 (234)
T PRK05642 129 ------SGRRLLLAASK---------------------------------------------SPRELP--VKLPDLKSRL 155 (234)
T ss_pred ------CCCEEEEECCC---------------------------------------------CHHHHC--CCHHHHHHHH
T ss_conf ------39959995787---------------------------------------------955523--0016799999
Q ss_pred C--CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8--4267211105789999874267799999999874498999968999999995510678742368999999
Q gi|254780271|r 308 P--VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKI 378 (424)
Q Consensus 308 P--iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~i 378 (424)
- ..+.+++|+.++..+||.. .....| +..+++++++|++.-- ---|.|..+++++
T Consensus 156 ~~~~~~~i~~l~d~~~~~iL~~-----------~a~~rg--i~l~~~v~~yl~~r~~---R~~~~L~~~l~~L 212 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQL-----------RASRRG--LHLTDEVGHFILTRGT---RSMSALFDLLERL 212 (234)
T ss_pred HCCCEEEECCCCHHHHHHHHHH-----------HHHHCC--CCCCHHHHHHHHHHCC---CCHHHHHHHHHHH
T ss_conf 5781275148998999999999-----------977546--8999899999999735---8899999999999
No 147
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.10 E-value=4.9e-06 Score=62.82 Aligned_cols=51 Identities=33% Similarity=0.532 Sum_probs=37.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 256835884073321769999999871853131012211111103556330357
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIIL 164 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~ 164 (424)
+.++||.|+|+.|||||.++|.||+.++.||+=.| .+-|. ..|.++..+..
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D--~~Ie~-~~g~si~~if~ 52 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTD--HLIEA-RAGKSIPEIFE 52 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC--HHHHH-HHCCCHHHHHH
T ss_conf 99980898889999989999999999596902398--89997-61699999999
No 148
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=8.8e-06 Score=61.04 Aligned_cols=93 Identities=26% Similarity=0.345 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC----CCEEEHHHHHHHHHHHCCC-------------CCC-----CHHHHHHHH
Q ss_conf 568358840733217699999998718----5313101221111110355-------------633-----035778876
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID----VPFTMADATTLTEAGYVGE-------------DVE-----NIILKLLQA 169 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~----~PF~~vdaT~~TE~GYvG~-------------Dve-----sii~~L~~~ 169 (424)
.|.-+||.||.|+||+.+|+.+|+.+- .|-....+..+...|-+-+ ... .-||+|.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 42068758999878999999999998379979765433889996689989687753444454311234869999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 5422776542233322333200233333344321025689887531058
Q gi|254780271|r 170 ADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 170 a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
....--...+.|+.+|+.|+.... .+|+|||.+|.
T Consensus 105 ~~~~p~~g~~KV~IId~Ad~mn~~--------------AaNalLK~LEE 139 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINRS--------------ACNALLKTLEE 139 (319)
T ss_pred HHHCCCCCCCEEEEECCHHHCCHH--------------HHHHHHHHHCC
T ss_conf 613720279569998066752899--------------99999998227
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=1.1e-05 Score=60.24 Aligned_cols=106 Identities=21% Similarity=0.382 Sum_probs=64.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHHHHHC----------CCC
Q ss_conf 58875212101355225683588407332176999999987185-------3131012211111103----------556
Q gi|254780271|r 96 HYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTEAGYV----------GED 158 (424)
Q Consensus 96 h~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE~GYv----------G~D 158 (424)
.|++++..-...+ .+.-+||.||.|+||+.+|+.+|+.+-- |--.+..-.+..+|-+ |.+
T Consensus 9 ~~~~l~~~~~~~r---~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~ 85 (324)
T PRK06871 9 IYQQITQTFLQGR---GHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKD 85 (324)
T ss_pred HHHHHHHHHHCCC---CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 9999999998699---5437876899997899999999999828999999988889899999738999879984678887
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf --3303577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 159 --VENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 159 --vesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
|| -||++.+.....--...+.|+++|+.|+.... .+|+|||.+|..
T Consensus 86 I~vd-~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~--------------AaNALLKtLEEP 133 (324)
T PRK06871 86 IGVD-QVREINEKVSQFAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEEP 133 (324)
T ss_pred CCHH-HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHH--------------HHHHHHHHHCCC
T ss_conf 8899-99999999864622059669997588885799--------------999999983389
No 150
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=6.8e-05 Score=54.85 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=102.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871853131012211111
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA 152 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~ 152 (424)
.-+|.||+|...+ ++-|+..-|.. ++ . .-+.+.||+|+|||.|.+.+...+... -. .+
T Consensus 19 ~tfdnFi~g~n~~---~~~al~~~~~~--~~----~-----~~l~l~G~~G~GKTHLLqA~~~~~~~~---~~-----~~ 76 (235)
T PRK08084 19 ETFASFYPGDNDS---LLAALQNVLRQ--EH----S-----GYIYLWGREGAGRSHLLHAACAELSQR---GD-----AV 76 (235)
T ss_pred CCHHCCCCCCCHH---HHHHHHHHHHC--CC----C-----CEEEEECCCCCCHHHHHHHHHHHHHCC---CC-----CE
T ss_conf 6630234488699---99999999857--89----8-----769998999988899999999999707---98-----57
Q ss_pred HHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 1035563-303577887654227765422333223332002333333443210256898875310587010256556432
Q gi|254780271|r 153 GYVGEDV-ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231 (424)
Q Consensus 153 GYvG~Dv-esii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~ 231 (424)
.|+--+. .+...+.++. ......+++|.++.++.+. ..-+..++.+-.+.+.
T Consensus 77 ~yl~~~~~~~~~~~~l~~------l~~~dll~iDDi~~i~g~~--------~~ee~lF~l~N~~~~~------------- 129 (235)
T PRK08084 77 GYVPLDKRAWFVPEVLEG------MEQLSLVCIDNIECIAGDE--------LWEMAIFDLYNRILES------------- 129 (235)
T ss_pred EEEEHHHHHHHHHHHHHH------HHHCCEEEEECHHHHCCCH--------HHHHHHHHHHHHHHHH-------------
T ss_conf 998779866517999987------6418989982745546997--------8999999999999984-------------
Q ss_pred CCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCC--CC
Q ss_conf 2243024310001232200046789887641234333211110000000168999641056777522068987207--84
Q gi|254780271|r 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRL--PV 309 (424)
Q Consensus 232 ~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRl--Pi 309 (424)
.....+.|++.. |.++- .+.|-|.-|| -.
T Consensus 130 --g~~~ll~ts~~~---------------------------------------------P~~l~--~~l~DL~SRl~~g~ 160 (235)
T PRK08084 130 --GKTRLLITGDRP---------------------------------------------PRQLN--LGLPDLASRLDWGQ 160 (235)
T ss_pred --CCCEEEEECCCC---------------------------------------------HHHCC--CCCHHHHHHHHCCC
T ss_conf --896699967988---------------------------------------------24302--31288999995697
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 26721110578999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r 310 LATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 310 iV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
++.+++++.++...||.. .....|+ .++++.+++|++..- + --|.|..+++++-.
T Consensus 161 ~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~-R--~~~~L~~~l~~Ld~ 215 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLD-R--EMRTLFMTLDQLDK 215 (235)
T ss_pred EEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C--CHHHHHHHHHHHHH
T ss_conf 278559998999999999-----------9997399--999899999998615-8--89999999999999
No 151
>KOG1942 consensus
Probab=98.04 E-value=4.7e-05 Score=55.96 Aligned_cols=63 Identities=30% Similarity=0.496 Sum_probs=45.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHH
Q ss_conf 742030859999999999986588752121013552256835884073321769999999871--8531310122
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--DVPFTMADAT 147 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT 147 (424)
...-.|||+.|.-|..+-|- -.|- . ...-+-+|+-||.|+|||-||-.+|+-| .+||+-.-.+
T Consensus 36 ~~~g~vGQ~~AReAagiivd-lik~----K-----kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgS 100 (456)
T KOG1942 36 VAAGFVGQENAREAAGIIVD-LIKS----K-----KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGS 100 (456)
T ss_pred CCCCCCCCHHHHHHHHHHHH-HHHH----H-----HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 24451152666655108999-9986----6-----3267279973699876568999999974799985666410
No 152
>KOG0735 consensus
Probab=98.03 E-value=2.5e-05 Score=57.88 Aligned_cols=79 Identities=28% Similarity=0.374 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHH----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 256835884073321769999999871----8531310122111111035563303577887654227765422333223
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARII----DVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
+.+-|||+-||.|+|||-|+++|++.+ .+-|..|+|+++ .|+-++++=..|...-..-. +.+-+||++|.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l-----~~~~~e~iQk~l~~vfse~~-~~~PSiIvLDd 502 (952)
T KOG0735 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTL-----DGSSLEKIQKFLNNVFSEAL-WYAPSIIVLDD 502 (952)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHC-----CCHHHHHHHHHHHHHHHHHH-HHCCCEEEECC
T ss_conf 3466189867998777699999998751565069999752210-----42048999999999999988-63780899705
Q ss_pred HHHHCCCCC
Q ss_conf 332002333
Q gi|254780271|r 187 VDKISRKSD 195 (424)
Q Consensus 187 idKi~~~~~ 195 (424)
.|-++..++
T Consensus 503 ld~l~~~s~ 511 (952)
T KOG0735 503 LDCLASASS 511 (952)
T ss_pred HHHHHCCCC
T ss_conf 035405684
No 153
>PRK13946 shikimate kinase; Provisional
Probab=97.99 E-value=6.4e-06 Score=62.01 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=40.3
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 522568358840733217699999998718531310122111111035563303577
Q gi|254780271|r 109 VELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILK 165 (424)
Q Consensus 109 ~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~ 165 (424)
..+.++||.|||+.|||||.++|.||+.|+.||+=.|.-- |. ..|..+..|...
T Consensus 16 ~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~I--E~-~~g~sI~eIF~~ 69 (195)
T PRK13946 16 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI--ER-AARMTIPEIFAT 69 (195)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH--HH-HHCCCHHHHHHH
T ss_conf 9858995899899999889999999999797989885999--99-809989999998
No 154
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=4e-05 Score=56.41 Aligned_cols=108 Identities=17% Similarity=0.292 Sum_probs=64.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHHHHH------CCCC--C
Q ss_conf 658875212101355225683588407332176999999987185-------313101221111110------3556--3
Q gi|254780271|r 95 NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTEAGY------VGED--V 159 (424)
Q Consensus 95 nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE~GY------vG~D--v 159 (424)
..|+++...-...+ .|.-+||.||.|+||..+|+.+|+.+-- |--.+..-.+...|= +..+ -
T Consensus 9 ~~~~~l~~~~~~~r---l~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~ 85 (334)
T PRK07993 9 PDYEKLVGSYQAGR---GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK 85 (334)
T ss_pred HHHHHHHHHHHCCC---CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 99999999998598---104675479999889999999999981899999999999978999866899984775342234
Q ss_pred CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 303----577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 160 ENI----ILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 160 esi----i~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.+| ||++.+.....--...+.|+++|..|+.. ...+|+|||.+|..
T Consensus 86 ~~I~IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~mn--------------~~AaNaLLKtLEEP 135 (334)
T PRK07993 86 SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEEP 135 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHC--------------HHHHHHHHHHHCCC
T ss_conf 559999999999998436656994799976677759--------------99999999861279
No 155
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=1.5e-05 Score=59.41 Aligned_cols=93 Identities=19% Similarity=0.313 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC--------CCEEEHHHHHHHHHHHCCC---------C-----------CCCHH
Q ss_conf 568358840733217699999998718--------5313101221111110355---------6-----------33035
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID--------VPFTMADATTLTEAGYVGE---------D-----------VENII 163 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~--------~PF~~vdaT~~TE~GYvG~---------D-----------vesii 163 (424)
.|.-.||.||.|+||+.+|+.+|+.+- .|=-.+.+-...+.|-+-+ + ||. |
T Consensus 20 l~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idq-i 98 (325)
T PRK08699 20 RPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDA-V 98 (325)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHH-H
T ss_conf 011797579999789999999999982899988899898888899986599999688513445300166556676999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 77887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 164 LKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 164 ~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
|+|.+.....--...+.|+++++.|+... ..+|+|||.+|..
T Consensus 99 R~l~~~~~~~~~~~~~kV~ii~~ae~mn~--------------~aaNaLLK~LEEP 140 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNV--------------QAANSLLKVLEEP 140 (325)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCHHHHCH--------------HHHHHHHHHHCCC
T ss_conf 99999971086568946999857777589--------------9999999984178
No 156
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.94 E-value=2e-05 Score=58.57 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=40.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 568358840733217699999998718531310122111111035563303577887
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQ 168 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~ 168 (424)
.++||.|||+.|||||.++|.||+.++.||+=.|.- -|. ..|..+..|.....+
T Consensus 3 ~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D~~--Ie~-~~g~si~~If~~~Ge 56 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--IEK-RTGADIGWVFDVEGE 56 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHH--HHH-HHCCCHHHHHHHHHH
T ss_conf 888289889999988999999999969996878099--999-979899999999749
No 157
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=1.8e-05 Score=58.92 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHC-----CC----CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 568358840733217699999998718---53131012211111103-----55----6330357788765422776542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID---VPFTMADATTLTEAGYV-----GE----DVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~---~PF~~vdaT~~TE~GYv-----G~----Dvesii~~L~~~a~~~v~~a~~ 179 (424)
.|.-+||.||.|+||+.+|+.+|+.+- .|-.-.....-+-..++ |. .++ .++++.......--...+
T Consensus 18 l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~~~~i~~~~HPD~~~i~pe~k~~~~~Id-~iR~l~~~i~~~p~~g~~ 96 (290)
T PRK05917 18 VPSAILLHGQDLSNLSQYAYELASLILLESSPEAQYKISQKIHPDIHEFFPEGKGRLHSIE-TPRAIKKQIWIHPYEANY 96 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCHH-HHHHHHHHHCCCCCCCCC
T ss_conf 6606876899986599999999999857899616889874689985996157778878678-999999996418646882
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 2333223332002333333443210256898875310587
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.|+.+|+.|+... ..+|+|||.+|..
T Consensus 97 KV~IId~Ad~Mn~--------------~AaNALLKtLEEP 122 (290)
T PRK05917 97 KIYIIHEADRMTL--------------DAISAFLKVLEDP 122 (290)
T ss_pred EEEEECCHHHHCH--------------HHHHHHHHHHCCC
T ss_conf 6999756776389--------------9999999973479
No 158
>KOG0732 consensus
Probab=97.91 E-value=1.1e-05 Score=60.35 Aligned_cols=100 Identities=29% Similarity=0.504 Sum_probs=67.9
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC------CEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 225683-588407332176999999987185------3131012211111103556330357788765422776542233
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV------PFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIV 182 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~------PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv 182 (424)
-|.|.+ +||-||.|+|||+.||.||.-..- -|..-.|-.+. -|||++ |--++.|.+.| ++.+..||
T Consensus 295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls--kwvgEa-ERqlrllFeeA----~k~qPSII 367 (1080)
T KOG0732 295 NITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS--KWVGEA-ERQLRLLFEEA----QKTQPSII 367 (1080)
T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHC--CCCCCH-HHHHHHHHHHH----HCCCCEEE
T ss_conf 668986323028998725688886665405411020244314844332--544757-78899889887----44485177
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 3223332002333333443210256898875310587
Q gi|254780271|r 183 YIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 183 ~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
|+||||-+++.. +...+.-+..|--.||-+|+|.
T Consensus 368 ffdeIdGlapvr---SskqEqih~SIvSTLLaLmdGl 401 (1080)
T KOG0732 368 FFDEIDGLAPVR---SSKQEQIHASIVSTLLALMDGL 401 (1080)
T ss_pred ECCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 305556646565---3667774456777788760477
No 159
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=3e-05 Score=57.36 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCC------CEEEHHHHHHHHHHHCCC------C--CCCH----HHHHHHHHHHH
Q ss_conf 5683588407332176999999987185------313101221111110355------6--3303----57788765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDV------PFTMADATTLTEAGYVGE------D--VENI----ILKLLQAADYN 173 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~------PF~~vdaT~~TE~GYvG~------D--vesi----i~~L~~~a~~~ 173 (424)
.|.-+|+.||.|+||+.+|+.+|+.+.- |=-.+..-.+..+|-+-+ + -.+| ||++.+.....
T Consensus 24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 63067667999857999999999998089999998877877999875899982366123356768799999999997545
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 7765422333223332002333333443210256898875310587
Q gi|254780271|r 174 VERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 174 v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
-....+.|++|++.|+... ..+|+|||.+|..
T Consensus 104 ~~~g~~KV~iI~~ae~m~~--------------~AaNALLKtLEEP 135 (319)
T PRK06090 104 SQLGGYRLFVIEPADAMNE--------------SASNALLKTLEEP 135 (319)
T ss_pred CCCCCCEEEEECCHHHCCH--------------HHHHHHHHHHCCC
T ss_conf 2106936999814443499--------------9999999984289
No 160
>PRK08903 hypothetical protein; Validated
Probab=97.88 E-value=0.00026 Score=50.80 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHCCC--CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 689872078--426721110578999987426779999999987449899996899999999551067874236899999
Q gi|254780271|r 300 IPEFIGRLP--VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEK 377 (424)
Q Consensus 300 iPEl~GRlP--iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~ 377 (424)
.|.|.-||- .++.+++++.+....||. +.+...|+ ..+++++++|+..-- --.|.|..++++
T Consensus 139 ~~DL~SRl~~gl~~~i~~pdde~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~---R~~~~L~~~l~~ 202 (227)
T PRK08903 139 REDLRTRLGWGLVYEVKPLSDEDKIAALK-----------AAAAERGL--QLADEVPDYLLTHFR---RDMPSLMALLDA 202 (227)
T ss_pred CHHHHHHHHCCCEEEEECCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHC---CCHHHHHHHHHH
T ss_conf 08999999389738997979999999999-----------99996299--998899999999834---789999999999
Q ss_pred HHHH
Q ss_conf 9677
Q gi|254780271|r 378 ILLD 381 (424)
Q Consensus 378 iLed 381 (424)
+-.-
T Consensus 203 Ld~~ 206 (227)
T PRK08903 203 LDRY 206 (227)
T ss_pred HHHH
T ss_conf 9999
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=4.1e-05 Score=56.35 Aligned_cols=105 Identities=25% Similarity=0.367 Sum_probs=65.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHHHHHCCC------C-CC
Q ss_conf 658875212101355225683588407332176999999987185-------313101221111110355------6-33
Q gi|254780271|r 95 NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTEAGYVGE------D-VE 160 (424)
Q Consensus 95 nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE~GYvG~------D-ve 160 (424)
+.|+++.. ..+ .+.=+||.||-|+||+.+|+.+|+.+.- |=-.+..-...+.|-+=+ + -.
T Consensus 10 ~~w~~l~~---~~r---l~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~ 83 (328)
T PRK05707 10 SLWQQLAG---RGR---HAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEAD 83 (328)
T ss_pred HHHHHHHH---CCC---CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 99999997---798---220464479998679999999999984899999899988889999875899987998426667
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf -----03577887654227765422333223332002333333443210256898875310587
Q gi|254780271|r 161 -----NIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 161 -----sii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
.-||+|.+.....--...+.|+.||+.|+... ..+|+|||.+|..
T Consensus 84 ~~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~--------------~AaNALLKtLEEP 133 (328)
T PRK05707 84 KPIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR--------------NAANALLKSLEEP 133 (328)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCH--------------HHHHHHHHHHHCC
T ss_conf 7697999999999983176678957999502877389--------------9999999985078
No 162
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.87 E-value=2.8e-05 Score=57.53 Aligned_cols=53 Identities=28% Similarity=0.461 Sum_probs=39.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 56835884073321769999999871853131012211111103556330357788
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLL 167 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~ 167 (424)
+++||.|||+.|||||.++|.||+.++.||+=.|. +-|. ..|..+..+.....
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~--~Ie~-~~g~sI~eif~~~G 53 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDL--WLQS-TLQMTVAEIVEREG 53 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH--HHHH-HHCCCHHHHHHHHC
T ss_conf 99988998899998899999999985999797869--9998-83989999999839
No 163
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=4.8e-05 Score=55.92 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 65887521210135522568358840733217699999998718
Q gi|254780271|r 95 NHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 95 nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-.|.|++.. . +=.|.-+||.||.|+||..+|+.+|+.+.
T Consensus 8 ~~w~~l~~~----~-~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~ll 46 (342)
T PRK06964 8 DDWNRLQAL----R-ARWPHALLLHGQAGIGKLAFAQHLAQGLL 46 (342)
T ss_pred HHHHHHHHC----C-CCHHEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999980----6-87130576579998679999999999983
No 164
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=97.83 E-value=5.9e-05 Score=55.25 Aligned_cols=171 Identities=23% Similarity=0.356 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH----CCCEEEHHHHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871----8531310122111--------11103556330357788765422776542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII----DVPFTMADATTLT--------EAGYVGEDVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l----~~PF~~vdaT~~T--------E~GYvG~Dvesii~~L~~~a~~~v~~a~~ 179 (424)
.|.|=|+||=-|||||=||-=||+.. .||-.--+|.-|+ -+-|=| |=|.-|..-+. .+++.+.
T Consensus 228 ~KNNPl~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRG-DFE~RLK~V~~----Ei~~~~~ 302 (774)
T TIGR02639 228 KKNNPLLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRG-DFEERLKAVVS----EIEKEPN 302 (774)
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCC-HHHHHHHHHHH----HHHCCCC
T ss_conf 678872044888644899999999864156467002478345404345641024542-47899999999----9852899
Q ss_pred H-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
Q ss_conf 2-333223332002333333443210256898875310587010256556432224302431000123220004678988
Q gi|254780271|r 180 G-IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRI 258 (424)
Q Consensus 180 ~-iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i 258 (424)
. |+|||||--|-.........-|.| |.|-..|..+.++ ||.+..|.+
T Consensus 303 anILFIDEIHTIVGAGATSGGsmDAS-----NLLKPaL~~G~iR-----------------------CIGsTTy~E---- 350 (774)
T TIGR02639 303 ANILFIDEIHTIVGAGATSGGSMDAS-----NLLKPALASGKIR-----------------------CIGSTTYEE---- 350 (774)
T ss_pred CCEEEEECCCCEEECCCCCCHHHHHH-----HHHHHHHHCCCEE-----------------------EECCCCHHH----
T ss_conf 95466411010331787875155244-----3211253078778-----------------------622652486----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76412343332111100000001689996410567775220689872078426721110578999987426779999999
Q gi|254780271|r 259 ISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQC 338 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~ 338 (424)
....+..+..|+- ||- -+..+.-|.+|=++||. -|-.||..
T Consensus 351 -----------------Y~~~FeKDrALsR-----------------RFQ-KIDv~EPs~eet~~ILk----GLk~~YE~ 391 (774)
T TIGR02639 351 -----------------YKNHFEKDRALSR-----------------RFQ-KIDVGEPSIEETVKILK----GLKEQYEE 391 (774)
T ss_pred -----------------HHCHHHCCCCCCC-----------------CCC-EECCCCCCHHHHHHHHH----HHHHHHHC
T ss_conf -----------------4111010202165-----------------423-31179578889999998----65542013
Q ss_pred HHHHCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9874498999968999999995510
Q gi|254780271|r 339 LFDMEDVELVFHEDALREIARCAIA 363 (424)
Q Consensus 339 Ll~~egV~L~FtdeAi~~IA~~A~~ 363 (424)
. =.+.++++||+.-|+.+..
T Consensus 392 f-----H~V~Y~~eal~~Av~LS~r 411 (774)
T TIGR02639 392 F-----HHVKYSDEALEAAVELSAR 411 (774)
T ss_pred C-----CCEECCHHHHHHHHHHHHH
T ss_conf 2-----5011386999999999888
No 165
>PHA02244 ATPase-like protein
Probab=97.81 E-value=5.5e-05 Score=55.49 Aligned_cols=105 Identities=18% Similarity=0.342 Sum_probs=73.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEH--HHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58840733217699999998718531310--122111111035---5633035778876542277654223332233320
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMA--DATTLTEAGYVG---EDVENIILKLLQAADYNVERAQRGIVYIDEVDKI 190 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~v--daT~~TE~GYvG---~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi 190 (424)
+.|.||-|+|||.+|+.+|+.|+.||--. =++.|-=.||+- .=++.-.++-.+ .-|+.++||+|-.
T Consensus 122 V~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~L~Gf~DAnG~yh~T~f~kaFk---------~GGLfLlDEiDAS 192 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK---------KGGLFFIDEIDAS 192 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCEECCCCCEECCHHHHHHH---------CCCEEEEEHHCCC
T ss_conf 6997588886348999999985888244132301343012564899672638999986---------1887997320044
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHH
Q ss_conf 0233333344321025689887531058701025655643222430243100012
Q gi|254780271|r 191 SRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNIL 245 (424)
Q Consensus 191 ~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nil 245 (424)
. ..+.-.|-.-+......+|+..-. .+.+++.|-+.|..
T Consensus 193 n--------------P~aL~~lNaALAN~fm~FPdG~V~--~HedFr~IAagNT~ 231 (383)
T PHA02244 193 I--------------PEALIIINSAIANKFFDFADERVT--AHEDFRVISAGNTL 231 (383)
T ss_pred C--------------HHHHHHHHHHHHCCCCCCCCCHHH--CCCCEEEEEECCCC
T ss_conf 8--------------799999989986476347642110--05763899724656
No 166
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.81 E-value=0.001 Score=46.62 Aligned_cols=220 Identities=24% Similarity=0.373 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHCCCHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 878999997420308599999----9999998658875212101355225683588407332176999999987185313
Q gi|254780271|r 67 NPQEILRVLDEYVIGQGQAKK----VLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 67 tP~eI~~~Ld~yVIGQ~~AKk----avAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
.-.++.+.||+-.||-.-.|. ..|.-+-.+.|... .-.... +.-.+-|.|..|+|||.+|.++|+++..
T Consensus 12 ~~~~~l~~l~~~l~Gl~Pvk~r~~~~a~lllv~~~r~~~-~l~~~~---P~lhm~ftG~PGtGkttva~~m~~~l~~--- 84 (284)
T TIGR02880 12 GIKEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQKL-GLASAA---PSLHMSFTGNPGTGKTTVALRMAQILHR--- 84 (284)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC---CCEEEEECCCCCCCHHHHHHHHHHHHHH---
T ss_conf 799999987676216415889999999999999999874-221048---8326775168987248999999999987---
Q ss_pred EHHHHHHHHHHHC--CCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1012211111103--5563303577887--------65422776542233322333200233333344321025689887
Q gi|254780271|r 143 MADATTLTEAGYV--GEDVENIILKLLQ--------AADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQAL 212 (424)
Q Consensus 143 ~vdaT~~TE~GYv--G~Dvesii~~L~~--------~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~L 212 (424)
.||| |.-|...--||++ ......++|.-|++|+||.--+.+ +...|| .|...-..|
T Consensus 85 ---------lGy~r~G~~~~~trddlvGqy~GhtaPktke~lk~a~GGvlfideayyly~----P~nerd-yG~eaieil 150 (284)
T TIGR02880 85 ---------LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYR----PDNERD-YGQEAIEIL 150 (284)
T ss_pred ---------CCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECHHHHCC----CCCCCH-HHHHHHHHH
T ss_conf ---------154003626785300131122125772268999874287366422033217----764102-237999999
Q ss_pred HHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 53105870102565564322243024310001232200046789887641234333211110000000168999641056
Q gi|254780271|r 213 LKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESE 292 (424)
Q Consensus 213 Lkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
|+.+|... .++..|+.|--+-++ .++..
T Consensus 151 lq~men~r---------------------~~lvvi~aGy~~rm~---------------------------~f~~s---- 178 (284)
T TIGR02880 151 LQVMENQR---------------------DDLVVILAGYKDRMD---------------------------SFFES---- 178 (284)
T ss_pred HHHHHCCC---------------------CCEEEEEECCHHHHH---------------------------HHHHC----
T ss_conf 99872365---------------------537888717078888---------------------------87511----
Q ss_pred HHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH----CC-CC
Q ss_conf 77752206898720784267211105789999874267799999999874498999968999999995510----67-87
Q gi|254780271|r 293 DLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA----HK-TG 367 (424)
Q Consensus 293 DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~----~n-iG 367 (424)
-|-|..|+--.+.|..-+.++|..|- ..++. .-.-.|++++-..+.+.-.. +- .-
T Consensus 179 -------nPG~~sr~a~h~~fPdy~~~~l~~ia----~~~l~---------~~~y~~~~~~~~~~~~y~~~r~~~P~f~n 238 (284)
T TIGR02880 179 -------NPGLSSRVAHHVDFPDYSEEELLAIA----ELMLE---------EQQYRLSAEAEEALADYIALRRKQPFFAN 238 (284)
T ss_pred -------CCCHHHHHHHHCCCCCCCHHHHHHHH----HHHHH---------HHHCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf -------78624677643158887767899999----99886---------54121118899999999998631783146
Q ss_pred CHHHHHHHHHHH
Q ss_conf 423689999996
Q gi|254780271|r 368 ARGLRSILEKIL 379 (424)
Q Consensus 368 AR~LrtIiE~iL 379 (424)
||..|..+.+.-
T Consensus 239 ars~rna~dr~r 250 (284)
T TIGR02880 239 ARSIRNALDRAR 250 (284)
T ss_pred HHHHHHHHHHHH
T ss_conf 788999998898
No 167
>PRK13947 shikimate kinase; Provisional
Probab=97.79 E-value=4.4e-05 Score=56.14 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf 83588407332176999999987185313101221
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATT 148 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~ 148 (424)
+||.|||+.|||||.+.|.||+.++.||+=.|.--
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~I 36 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEI 36 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH
T ss_conf 85899799999889999999999796989874999
No 168
>PRK13948 shikimate kinase; Provisional
Probab=97.76 E-value=3.3e-05 Score=57.05 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=40.1
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 22568358840733217699999998718531310122111111035563303577887
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQ 168 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~ 168 (424)
+-.++||.|||+.|+|||.+.|.||+.++.||+=.|.- -| ...|..+..|.....+
T Consensus 7 p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~--Ie-~~~g~sI~eIF~~~GE 62 (182)
T PRK13948 7 PRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKL--IT-RVVGKSIPEVFAQEGE 62 (182)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHH--HH-HHHCCCHHHHHHHHCH
T ss_conf 99998189889999988999999999969598888499--99-9889399999998489
No 169
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.73 E-value=4.8e-05 Score=55.93 Aligned_cols=54 Identities=31% Similarity=0.475 Sum_probs=40.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 358840733217699999998718531310122111111035563303577887654
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAAD 171 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~ 171 (424)
||.|||+.|||||.++|.||+.++.||+=.|. +-| .+.|..+..++....+..-
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D~--~Ie-~~~g~si~eif~~~Ge~~F 54 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDE--LIE-QRAGMSIPEIFAEEGEEGF 54 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCH--HHH-HHHCCCHHHHHHHCCHHHH
T ss_conf 98998899998899999999997989796859--999-9949999999987493878
No 170
>KOG0742 consensus
Probab=97.72 E-value=5.9e-05 Score=55.28 Aligned_cols=208 Identities=20% Similarity=0.270 Sum_probs=101.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 835884073321769999999871853131012211111103556330357788765----4227765422333223332
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAA----DYNVERAQRGIVYIDEVDK 189 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a----~~~v~~a~~~iv~iDEidK 189 (424)
.||||-||.|+|||..||-||+-.+..++. .-|-||--+.++-+.+- ++.-+...--++||||.|-
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~----------mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADA 454 (630)
T KOG0742 385 RNILFYGPPGTGKTMFARELARHSGLDYAI----------MTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADA 454 (630)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHCCCCEEH----------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 400324799986049999998852874100----------1378755521788999999878875156644998611678
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCC
Q ss_conf 00233333344321025689887531058701025655643222430243100012322000467898876412343332
Q gi|254780271|r 190 ISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIG 269 (424)
Q Consensus 190 i~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~ 269 (424)
-......... ........|+||=-- |. .....+.+--+|-
T Consensus 455 FLceRnktym--SEaqRsaLNAlLfRT-Gd------------qSrdivLvlAtNr------------------------- 494 (630)
T KOG0742 455 FLCERNKTYM--SEAQRSALNALLFRT-GD------------QSRDIVLVLATNR------------------------- 494 (630)
T ss_pred HHHHHCCCCC--CHHHHHHHHHHHHHC-CC------------CCCCEEEEEECCC-------------------------
T ss_conf 9987520102--588999998898762-56------------5542689960588-------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH---------HHHHHHH
Q ss_conf 1111000000016899964105677752206898720784267211105789999874267799---------9999998
Q gi|254780271|r 270 FSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALI---------KQYQCLF 340 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLi---------kQy~~Ll 340 (424)
|.||- --.--|++..|+|.--.+|+=.++|..--|.-+ -.+..||
T Consensus 495 ---------------------pgdlD-----sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lf 548 (630)
T KOG0742 495 ---------------------PGDLD-----SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLF 548 (630)
T ss_pred ---------------------CCCHH-----HHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf ---------------------32101-----6787655541306899778999999999999814777778972155777
Q ss_pred HHCCCEEEECHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCC
Q ss_conf 74498999968999999995510--67874236899999967774027678984199983778558
Q gi|254780271|r 341 DMEDVELVFHEDALREIARCAIA--HKTGARGLRSILEKILLDTMFELPMLKGVSSVIISDDVVKG 404 (424)
Q Consensus 341 ~~egV~L~FtdeAi~~IA~~A~~--~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~~~V~~ 404 (424)
+-+--+|+...+.-......|.. +++--|-+- +++.-+.-.+-. -..++.|...++.
T Consensus 549 kk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia----kLva~vQAavYg---sedcvLd~~lf~e 607 (630)
T KOG0742 549 KKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA----KLVASVQAAVYG---SEDCVLDEALFDE 607 (630)
T ss_pred HHHHHEEEECCCHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_conf 6440155443431888999999860687578999----999998898850---4221126999999
No 171
>PRK13949 shikimate kinase; Provisional
Probab=97.68 E-value=7.6e-05 Score=54.51 Aligned_cols=53 Identities=34% Similarity=0.419 Sum_probs=39.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 83588407332176999999987185313101221111110355633035778876
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQA 169 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~ 169 (424)
+||.|||+.|||||-++|.||+.++.||+=.|.-- | -..|..+..|.....+.
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~I--e-~~~g~sI~eif~~~Ge~ 54 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFI--E-NRFHKTVGDIFAERGEA 54 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH--H-HHHCCCHHHHHHHHCHH
T ss_conf 83899799999889999999999599979784999--9-98599999999986989
No 172
>PRK07261 topology modulation protein; Provisional
Probab=97.67 E-value=4.9e-05 Score=55.85 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=40.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 58840733217699999998718531310122111111035563303577
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILK 165 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~ 165 (424)
|+.||++|+|||.+||+||+.++.|++-.|+ -|=..|++.++.+.....
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~-l~w~p~w~~~~~~e~~~~ 51 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQ-LHFSSNWQERDDDDMIAD 51 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECC-EEECCCCEECCHHHHHHH
T ss_conf 9998899986899999999987979797022-788899988889999999
No 173
>PRK06893 DNA replication initiation factor; Validated
Probab=97.66 E-value=0.0012 Score=46.14 Aligned_cols=191 Identities=14% Similarity=0.203 Sum_probs=101.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHH
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871---853131012211
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTL 149 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~ 149 (424)
.-+|.|++|.... ++.++++.|.. .. ...+.+-||+|||||.|.+.+...+ +.+-+-+.+++.
T Consensus 13 ~tfdnF~~~~n~~---~~~~l~~~~~~-----~~------~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~ 78 (229)
T PRK06893 13 ETLDNFYSDNNLL---LLDSLRKNFID-----LK------QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCHHCCCCCCHHH---HHHHHHHHCCC-----CC------CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHH
T ss_conf 6543154687499---99999975502-----46------9879998999998899999999999971898599973775
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 11110355633035778876542277654223332233320023333334432102568988753105870102565564
Q gi|254780271|r 150 TEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGR 229 (424)
Q Consensus 150 TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr 229 (424)
. +... .++..+ .....+++|-++.++.+. ..|.+|+.++.... .
T Consensus 79 ~---~~~~---~~l~~l----------~~~d~l~iDDi~~i~g~~------------~~e~~lF~l~N~l~----~---- 122 (229)
T PRK06893 79 Q---YFSP---AVLENL----------EQQDLVCLDDLQAVIGNE------------EWELAIFDLFNRIK----E---- 122 (229)
T ss_pred H---HCCH---HHHHHH----------HHCCEEEEECHHHHCCCH------------HHHHHHHHHHHHHH----H----
T ss_conf 6---4069---999876----------547979996723424883------------89999999999999----7----
Q ss_pred CCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-
Q ss_conf 3222430243100012322000467898876412343332111100000001689996410567775220689872078-
Q gi|254780271|r 230 KHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP- 308 (424)
Q Consensus 230 k~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP- 308 (424)
......+.+++. .|..+. ...|.|..||-
T Consensus 123 ---~~~~~ll~ss~~---------------------------------------------~p~~l~--~~l~DL~SRl~~ 152 (229)
T PRK06893 123 ---SGKTLLLISANQ---------------------------------------------SPHALQ--IKLPDLASRLTW 152 (229)
T ss_pred ---CCCCEEEEECCC---------------------------------------------CHHHHC--CHHHHHHHHHHC
T ss_conf ---599179985798---------------------------------------------833221--002679999968
Q ss_pred -CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf -42672111057899998742677999999998744989999689999999955106787423689999996
Q gi|254780271|r 309 -VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKIL 379 (424)
Q Consensus 309 -iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iL 379 (424)
..+.+++++.+....||. +.++..|+ +++++++++|++.--. -.|.|-.+++++=
T Consensus 153 ~~~~~i~~~dd~~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~R---~~~~l~~~l~~Ld 208 (229)
T PRK06893 153 GEIYQLNDLTDEQKIEVLQ-----------RNAYQRGI--ELSDETANFLLKRLDR---DMHTLFDALDLLD 208 (229)
T ss_pred CEEEEECCCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf 8369966777579999999-----------99996499--9998999999998347---8999999999999
No 174
>PRK09183 transposase/IS protein; Provisional
Probab=97.65 E-value=3.7e-05 Score=56.70 Aligned_cols=96 Identities=26% Similarity=0.365 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH-HHHH----H--HHHH
Q ss_conf 56835884073321769999999871-----853131012211111103556330357788765-4227----7--6542
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAA-DYNV----E--RAQR 179 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a-~~~v----~--~a~~ 179 (424)
.+.||+|+||||||||.||-.|+.-+ .|-|+. ++. .+.+|..+. .+.. . -...
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~--~~~-------------L~~~L~~a~~~~~~~~~l~r~l~~~ 164 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT--AAD-------------LLLQLSTAQRQGRYKTTLQRGVMAP 164 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE--HHH-------------HHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 5886799899998689999999999998799399978--999-------------9999999987685999999874346
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 23332233320023333334432102568988753105870102565564322243024310001232
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFI 247 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi 247 (424)
..+.+||+=-.. ......+.|+++++.... ..-.|-|||.-|-
T Consensus 165 dLLIiDdlG~~~------------~~~~~~~~lfeli~~Rye-------------~~S~IiTSn~~~~ 207 (258)
T PRK09183 165 RLLIIDEIGYLP------------FSQEEANLFFQVIAKRYE-------------KGAMILTSNLPFG 207 (258)
T ss_pred CEEEEHHHHCCC------------CCHHHHHHHHHHHHHHHC-------------CCCEEEECCCCHH
T ss_conf 514431331546------------888899999999999857-------------6778998899978
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=97.65 E-value=7e-05 Score=54.73 Aligned_cols=57 Identities=39% Similarity=0.582 Sum_probs=37.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-----CCEEEHHHH
Q ss_conf 7420308599999999999865887521210135522568358840733217699999998718-----531310122
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID-----VPFTMADAT 147 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~-----~PF~~vdaT 147 (424)
||+ |||||+-.|-+- ||--.. .-.+.||-||.|||||.-|-.||+-|- -.|+...|+
T Consensus 24 Ldd-IVgQehIVkRLK-----~YVk~~----------smPHLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas 85 (863)
T PRK04132 24 LDE-IVGQDHIVKRLK-----HYVKTG----------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (863)
T ss_pred HHH-HCCHHHHHHHHH-----HHHCCC----------CCCCEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 655-227499999999-----886238----------88544304899877144788888876143145556641442
No 176
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.63 E-value=0.0014 Score=45.73 Aligned_cols=198 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHH--CCCE---EEHHHHH
Q ss_conf 742030859999999999986588752121013552256835884-073321769999999871--8531---3101221
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARII--DVPF---TMADATT 148 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILli-GPTGvGKTelAr~LAk~l--~~PF---~~vdaT~ 148 (424)
.|.||+|....- |.|.| +.+-..+ . ..-|-||| ||+|.|||.|.+++|..+ ..|- +-+.|-.
T Consensus 118 FdnFVvG~sN~l-A~aAA-----~~Va~~p---g---~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~ 185 (447)
T PRK00149 118 FDNFVVGKSNRL-AHAAA-----LAVAENP---G---KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEK 185 (447)
T ss_pred CCCCEECCCCHH-HHHHH-----HHHHHCC---C---CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 326222698599-99999-----9998376---7---6778558977998878899999999999858997289954999
Q ss_pred HHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf 1111---1035563303577887654227765422333223332002333333443210256898875310587010256
Q gi|254780271|r 149 LTEA---GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPP 225 (424)
Q Consensus 149 ~TE~---GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~ 225 (424)
|+.- .+-..+.+.. ++- ....-++++|.+.-++.+ ++.|..|+.+++.-..
T Consensus 186 F~~~~v~al~~~~~~~F-r~~---------yr~~DvLliDDiqfl~gk------------~~tqeeff~~fn~l~~---- 239 (447)
T PRK00149 186 FTNDFVKALRNNAMEEF-KEK---------YRSVDVLLIDDIQFLAGK------------EKTQEEFFHTFNALHE---- 239 (447)
T ss_pred HHHHHHHHHHCCCHHHH-HHH---------HHCCCEEEECHHHHHHCC------------HHHHHHHHHHHHHHHH----
T ss_conf 99999999851869999-999---------972885432148886055------------7799999999999998----
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 55643222430243100012322000467898876412343332111100000001689996410567775220689872
Q gi|254780271|r 226 QGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIG 305 (424)
Q Consensus 226 ~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~G 305 (424)
..-.+|.|++- .|.+|. +|-+.|..
T Consensus 240 --------~~kqiv~tsd~---------------------------------------------~P~~l~--~l~~rL~S 264 (447)
T PRK00149 240 --------NNKQIVITSDR---------------------------------------------PPKELE--GLEDRLRS 264 (447)
T ss_pred --------CCCEEEEECCC---------------------------------------------CHHHCC--CCCHHHHH
T ss_conf --------49968995788---------------------------------------------967656--51177886
Q ss_pred CC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 07--84267211105789999874267799999999874498999968999999995510678742368999999677
Q gi|254780271|r 306 RL--PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLD 381 (424)
Q Consensus 306 Rl--PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLed 381 (424)
|| ..+|.+++.+.+.-..||.. ..+..| +.++++++++||+.-.. -.|-|-.++-++..-
T Consensus 265 Rf~~Gl~~~i~~Pd~e~r~~Il~~-----------k~~~~~--~~l~~~v~~~iA~~~~~---nvR~LeGal~~l~a~ 326 (447)
T PRK00149 265 RFEWGLTVDIEPPDLETRVAILQK-----------KAEEEG--INLPNEVLEFIAKRIRS---NIRELEGALNRLVAY 326 (447)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHH-----------HHHHCC--CCCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHH
T ss_conf 763762651059999999999999-----------999728--99998999999971268---899999999999999
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.63 E-value=0.00011 Score=53.33 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 74 VLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 74 ~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
-.+.|-+--+.-++|++-|- .. .+.-.. ...|++|+||+|+|||.||-.|+.-+
T Consensus 72 ~f~ny~~~~~~~~~a~~~a~-----~~--~~~F~~---~~~NlIf~G~pGtGKTHLA~AIg~~a 125 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAK-----SI--ADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCCCCCCCCHHHHHHHHHHH-----HH--HHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 63456457878999999999-----99--998731---88608998999987889999999999
No 178
>KOG0744 consensus
Probab=97.63 E-value=6.2e-05 Score=55.09 Aligned_cols=130 Identities=26% Similarity=0.310 Sum_probs=72.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC---------EEEHHHH-HHHH-HHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 35884073321769999999871853---------1310122-1111-11035563303577887654227765-42233
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVP---------FTMADAT-TLTE-AGYVGEDVENIILKLLQAADYNVERA-QRGIV 182 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~P---------F~~vdaT-~~TE-~GYvG~Dvesii~~L~~~a~~~v~~a-~~~iv 182 (424)
=||+-||.|+|||-|.+.||+-|-.- .+-+.+- -|.- -+-.|.-|..|..+ -...++.. -.--|
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~k----I~ELv~d~~~lVfv 254 (423)
T KOG0744 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQK----IQELVEDRGNLVFV 254 (423)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEE
T ss_conf 89985799988227999998751465237644406999704678898871211389999999----99997178968999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHH
Q ss_conf 3223332002333333443210-2568988753105870102565564322243024310001232200046789887
Q gi|254780271|r 183 YIDEVDKISRKSDNPSITRDVS-GEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRII 259 (424)
Q Consensus 183 ~iDEidKi~~~~~~~~~~~dvs-~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~ 259 (424)
+|||++-++....+.+.....+ +-.|-|+||-.++-- ....+..+.-|+|+.--.--||+.-.+|+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-----------K~~~NvliL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-----------KRYPNVLILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred EEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-----------CCCCCEEEEECCCHHHHHHHHHHHHHHHE
T ss_conf 80787888999875413799821899999999989986-----------04797799962626777788861175421
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=7.6e-05 Score=54.51 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=39.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 358840733217699999998718531310122111111035563303
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
-|+.||++|+|||.+||+||+.++.|.+-.|. -|=+.|++..+.+..
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-l~w~~~w~~~~~~e~ 49 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFWKPNWEGVPKEEQ 49 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-EEECCCCCCCCHHHH
T ss_conf 79998899987999999999988969796443-476689946888999
No 180
>PRK08181 transposase; Validated
Probab=97.61 E-value=5.3e-05 Score=55.59 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871-----8531310122111111035563303577887654227765422333223
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
.+.|++|+||||||||.||..|+.-+ .|-|+.+ +.+-+.=...+.-.+ ..+++ ..-.....+.+||
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~--~~L~~~L~~a~~~~~-~~~~~------~~l~~~dLLIiDe 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT--TDLVQKLQVARRELQ-LESAI------AKLDKFDLLILDD 175 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHHHHHHHHHHHCCC-HHHHH------HHHHCCCEEEEHH
T ss_conf 48708998999987889999999999987993999789--999999999775583-99999------9974446012201
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 332002333333443210256898875310587010256556432224302431000123
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilf 246 (424)
+=-.. ....-.+.|+++++... ...-.|-|||.-|
T Consensus 176 ~G~~~------------~~~~~~~~lf~lI~~Ry-------------e~~S~IITSn~~~ 210 (269)
T PRK08181 176 LAYVT------------KDQAETSVLFELISARY-------------ERRSILITANQPF 210 (269)
T ss_pred CCCCC------------CCHHHHHHHHHHHHHHH-------------CCCCEEEECCCCH
T ss_conf 05667------------99899999999999985-------------7888899889997
No 181
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.55 E-value=0.00013 Score=52.95 Aligned_cols=63 Identities=27% Similarity=0.519 Sum_probs=41.5
Q ss_pred CCCCCCE-EEEECCCCCHHHHHHHHHHHHC-CCEEEHHHHHHHHHHHCCCCCCCHHHHHHH--HHHHHHHH
Q ss_conf 2256835-8840733217699999998718-531310122111111035563303577887--65422776
Q gi|254780271|r 110 ELAKSNI-LLVGPTGCGKTYLAQTLARIID-VPFTMADATTLTEAGYVGEDVENIILKLLQ--AADYNVER 176 (424)
Q Consensus 110 ei~~~NI-LliGPTGvGKTelAr~LAk~l~-~PF~~vdaT~~TE~GYvG~Dvesii~~L~~--~a~~~v~~ 176 (424)
+|.++-| =|||||||||+-+-|+|=|+-| +|=++++= ++=|-|.|+-+--.|.++ ...+||=+
T Consensus 23 ~I~~n~vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G----~v~f~G~dIy~~~~D~~~LR~~vGMVFQ 89 (248)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG----KVLFDGQDIYDKKIDVVELRKRVGMVFQ 89 (248)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE----EEEECCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 003770589877889867899999887764078816888----8986451145656687887622585214
No 182
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.55 E-value=9.4e-05 Score=53.86 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 6835884073321769999999871853131012211
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~ 149 (424)
|+=|+.+||||||||.||=.||+.+++..+-+|+-.+
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~Qv 40 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQV 40 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 9779998988658999999999987998994126887
No 183
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.54 E-value=0.00011 Score=53.35 Aligned_cols=89 Identities=26% Similarity=0.491 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHH------HCCCEEEHHHHHHHHHHHCCCCCCCHHHHHH--------HHHHHHHHHH
Q ss_conf 5683588407332176999999987------1853131012211111103556330357788--------7654227765
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARI------IDVPFTMADATTLTEAGYVGEDVENIILKLL--------QAADYNVERA 177 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~------l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~--------~~a~~~v~~a 177 (424)
..+-||+.||||.||..||||+-.+ +..||+-|.|.++-.-+ .-|-++.-+ +.-.+..+.|
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~-----amsalfghvkgaftga~~~r~gllrsa 281 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT-----AMSALFGHVKGAFTGARESREGLLRSA 281 (531)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCH-----HHHHHHHHHHCCCCCCHHHHHHHHCCC
T ss_conf 469768646887436689999999998887537862788630004752-----889987640013146334554424337
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 422333223332002333333443210256898875310587
Q gi|254780271|r 178 QRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 178 ~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
..|.+|+|||-.+..+ -|-+|||-+|..
T Consensus 282 dggmlfldeigelgad--------------eqamllkaieek 309 (531)
T COG4650 282 DGGMLFLDEIGELGAD--------------EQAMLLKAIEEK 309 (531)
T ss_pred CCCEEEHHHHHHCCCC--------------HHHHHHHHHHHH
T ss_conf 7865756743324752--------------788999998871
No 184
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00037 Score=49.67 Aligned_cols=24 Identities=42% Similarity=0.743 Sum_probs=16.7
Q ss_pred CCCEEEEECCCCCHHH-HHHHHHHH
Q ss_conf 6835884073321769-99999987
Q gi|254780271|r 113 KSNILLVGPTGCGKTY-LAQTLARI 136 (424)
Q Consensus 113 ~~NILliGPTGvGKTe-lAr~LAk~ 136 (424)
++-|.|+||||||||- ||+--|++
T Consensus 223 ~kvi~lVGPTGVGKTTTiAKLAA~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6299998999988899999999999
No 185
>KOG0741 consensus
Probab=97.52 E-value=0.00014 Score=52.54 Aligned_cols=91 Identities=32% Similarity=0.485 Sum_probs=60.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8358840733217699999998718531310----122111111035563303577887654227765422333223332
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMA----DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~v----daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidK 189 (424)
..+|+-||.|+|||-||-++|+-.+-||+|+ |+.-|+|.--+ .-|.+..+ |.-+-+..++.+|.++.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc-----~~i~k~F~----DAYkS~lsiivvDdiEr 609 (744)
T KOG0741 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKC-----AHIKKIFE----DAYKSPLSIIVVDDIER 609 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHH-----HHHHHHHH----HHHCCCCEEEEECCHHH
T ss_conf 5899866998876889999975279984797377870374667889-----99999888----76338650899815565
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 0023333334432102568988753105
Q gi|254780271|r 190 ISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 190 i~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
+. +...+++..|. -|.|+|+-.+.
T Consensus 610 Li---D~vpIGPRfSN-~vlQaL~VllK 633 (744)
T KOG0741 610 LL---DYVPIGPRFSN-LVLQALLVLLK 633 (744)
T ss_pred HH---CCCCCCCCHHH-HHHHHHHHHHC
T ss_conf 62---00246840357-99999999952
No 186
>PRK06526 transposase; Provisional
Probab=97.51 E-value=6.7e-05 Score=54.90 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHH-----HHHHHH
Q ss_conf 56835884073321769999999871-----8531310122111111035563303577887654-227-----765422
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVGEDVENIILKLLQAAD-YNV-----ERAQRG 180 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~-~~v-----~~a~~~ 180 (424)
.+.||+|+||||+|||.||..|+.-+ .|-|+.+ +. .+.+|..+.. +.. +-....
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~--~~-------------L~~~L~~a~~~g~~~~~~~~l~~~d 161 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA--AQ-------------WVARLAAAHHAGRLQDELVKLGRIP 161 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEH--HH-------------HHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 58878998999986899999999999986996799877--99-------------9999999885580999999851368
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 333223332002333333443210256898875310587010256556432224302431000123
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILF 246 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilf 246 (424)
++.+||+=-.. ......+.|+++++.... ..-.|-|||.-|
T Consensus 162 LLIiDe~g~~~------------~~~~~a~~lf~li~~Rye-------------~~S~IiTSn~~~ 202 (254)
T PRK06526 162 LLIVDEVGYIP------------FEAEAANLFFQLVSSRYE-------------RASLIVTSNKPF 202 (254)
T ss_pred EEEEECCCCCC------------CCHHHHHHHHHHHHHHHC-------------CCCEEEECCCCH
T ss_conf 77650213644------------788999999999999974-------------588676658986
No 187
>KOG0989 consensus
Probab=97.50 E-value=0.00015 Score=52.42 Aligned_cols=106 Identities=26% Similarity=0.366 Sum_probs=67.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH------HHHH
Q ss_conf 7420308599999999999865887521210135522568358840733217699999998718531310------1221
Q gi|254780271|r 75 LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA------DATT 148 (424)
Q Consensus 75 Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v------daT~ 148 (424)
+|+ ++||+....++.-|+ .| + .-.|.||-||-|+|||--|+.+|+-++-|-.+- .|+-
T Consensus 35 ~de-~~gQe~vV~~L~~a~----~~-~----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989 35 FDE-LAGQEHVVQVLKNAL----LR-R----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred HHH-HCCHHHHHHHHHHHH----HH-C----------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCC
T ss_conf 776-501599999999998----60-6----------8860786689998676899999998557423555424313660
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 11111035563303577887654---------22776542233322333200233333344321025689887531058
Q gi|254780271|r 149 LTEAGYVGEDVENIILKLLQAAD---------YNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 149 ~TE~GYvG~Dvesii~~L~~~a~---------~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
....+ +++.-+.... ...--.++-|+.+||.|-.... .|.+|.+.+|.
T Consensus 99 erGis--------vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~ 155 (346)
T KOG0989 99 ERGIS--------VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMED 155 (346)
T ss_pred CCCCC--------CHHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHH--------------HHHHHHHHHHC
T ss_conf 01431--------00665237998750255656788986328997416453099--------------99999999862
No 188
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.49 E-value=9.4e-05 Score=53.87 Aligned_cols=34 Identities=35% Similarity=0.700 Sum_probs=30.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 6835884073321769999999871853131012
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
..||.||||-|+|||-|.|.||+.|+.||+=.|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 9618997179997768999999981998022469
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.48 E-value=8.6e-05 Score=54.12 Aligned_cols=94 Identities=28% Similarity=0.441 Sum_probs=57.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHHHHH--------HHC----CC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871853--131012211111--------103----55-6330357788765422776
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTLTEA--------GYV----GE-DVENIILKLLQAADYNVER 176 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~TE~--------GYv----G~-Dvesii~~L~~~a~~~v~~ 176 (424)
+|+||+|-||.|+|||.+|++||..+..- =.++.+..|-.. ||. |. -+..+..++.+.|..+-+
T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p~- 271 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPE- 271 (459)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCCC-
T ss_conf 5882796589998878999999999707887784689983588661787646056888613268369999999984989-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 54223332233320023333334432102568988753105870
Q gi|254780271|r 177 AQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 177 a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
..-++.+|||-..... .++-.||-++|...
T Consensus 272 -~~y~~iideinr~~~~-------------~~fgel~~liE~dk 301 (459)
T PRK11331 272 -KKYVFIIDEINRANLS-------------KVFGEVMMLMEHDK 301 (459)
T ss_pred -CCEEEEEEHHHCCCHH-------------HHHHHHHHHHHHCC
T ss_conf -8769998432033889-------------99999999964125
No 190
>KOG0743 consensus
Probab=97.47 E-value=0.00026 Score=50.72 Aligned_cols=134 Identities=27% Similarity=0.368 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf 78999997420308599999999999865887521210135522568358840733217699999998718531310122
Q gi|254780271|r 68 PQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADAT 147 (424)
Q Consensus 68 P~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT 147 (424)
-++|++-|++|+=|++-=||+ =.+||| -.||-||.|+||+-+--++|..|+-...-.
T Consensus 210 K~~I~~Dl~~F~k~k~~Ykrv-----GkawKR---------------GYLLYGPPGTGKSS~IaAmAn~L~ydIydL--- 266 (457)
T KOG0743 210 KERIIDDLDDFIKGKDFYKRV-----GKAWKR---------------GYLLYGPPGTGKSSFIAAMANYLNYDIYDL--- 266 (457)
T ss_pred HHHHHHHHHHHHHCCHHHHHC-----CCCCCC---------------CCEEECCCCCCHHHHHHHHHHHCCCCEEEE---
T ss_conf 899999999997223578864-----845000---------------412047999988899999972058736774---
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHHHHCCCCEEEC
Q ss_conf 111111035563303577887654227765422333223332002333333----4432102568988753105870102
Q gi|254780271|r 148 TLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPS----ITRDVSGEGVQQALLKIMEGTIASV 223 (424)
Q Consensus 148 ~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~----~~~dvs~~gvq~~LLkileg~~~~v 223 (424)
.+|+ |+.|-| +++|+-+.. .++||+|..||-......-.. ...+..+.=..-.||--++|--..-
T Consensus 267 eLt~---v~~n~d--Lr~LL~~t~------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743 267 ELTE---VKLDSD--LRHLLLATP------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred EECC---CCCCHH--HHHHHHHCC------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCC
T ss_conf 4002---368389--999997289------97189996124323044345556645467766066477566413430048
Q ss_pred CCCCCCCCCCCCEEEEECCHH
Q ss_conf 565564322243024310001
Q gi|254780271|r 224 PPQGGRKHPQQEFLQVDTTNI 244 (424)
Q Consensus 224 ~~~~grk~~~~~~~~Idt~ni 244 (424)
.++.|+|+|+|-
T Consensus 336 ---------g~ERIivFTTNh 347 (457)
T KOG0743 336 ---------GDERIIVFTTNH 347 (457)
T ss_pred ---------CCCEEEEEECCC
T ss_conf ---------873499994687
No 191
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.45 E-value=0.00012 Score=53.23 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=28.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 5884073321769999999871853131012
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
|++.|++|||||.+|+.||+.++.+|+..|.
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCC
T ss_conf 8999189999999999999971995641543
No 192
>PRK00625 shikimate kinase; Provisional
Probab=97.45 E-value=0.00013 Score=52.97 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=30.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHH
Q ss_conf 35884073321769999999871853131012
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADA 146 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vda 146 (424)
||.|||+-|||||-+.|.||+.++.||+=.|.
T Consensus 2 nI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 29998999998899999999993999577499
No 193
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=97.43 E-value=0.00027 Score=50.66 Aligned_cols=143 Identities=25% Similarity=0.445 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH---HCCCE
Q ss_conf 998789999974203085999999999998658875212101355225683588407332176999999987---18531
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARI---IDVPF 141 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~---l~~PF 141 (424)
.|.+.+=.......|||..-|-|.|=-.+ ++.- . .-|-+|+-|=||+||=.+|+++=.. .+.||
T Consensus 200 ~~~~~~~~~~~~~~i~G~Spam~~v~~~~----~~vA---~------~nSTVLlRGESGTGKEl~A~AIH~~SpR~~~PF 266 (574)
T TIGR01817 200 EPEAARRRSGKEDGIVGKSPAMRQVVDQI----KVVA---R------SNSTVLLRGESGTGKELIAKAIHELSPRAKRPF 266 (574)
T ss_pred CCCHHHHHCCCCCCCCCCCHHHHHHHHHH----HHHC---C------CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 55412331234474012478999999886----5201---3------176678505657443344423404664557885
Q ss_pred EEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC-
Q ss_conf 31012211111----1035563303577887654227765422333223332002333333443210256898875310-
Q gi|254780271|r 142 TMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIM- 216 (424)
Q Consensus 142 ~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkil- 216 (424)
||+.|-.|.|. -.-|..=+- -.-=+..-.+-=|.|..|.+|||||=-|++. -|=-||++|
T Consensus 267 VK~NCAALse~lLESELFGHEKGA-FTGA~~~RkGRFElAdGGTLFLDEIGEISPa--------------FQAKLLRVLQ 331 (574)
T TIGR01817 267 VKLNCAALSETLLESELFGHEKGA-FTGAVAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLLRVLQ 331 (574)
T ss_pred EEEECCCCCCCHHHHHHHCCCCHH-HHHHHHHCCCCEEECCCCCCCCCCCCCCCHH--------------HHHHHHHHHH
T ss_conf 450064477611245451343014-6888751777533027883200001467856--------------8889988752
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEECCH
Q ss_conf 587010256556432224302431000
Q gi|254780271|r 217 EGTIASVPPQGGRKHPQQEFLQVDTTN 243 (424)
Q Consensus 217 eg~~~~v~~~~grk~~~~~~~~Idt~n 243 (424)
||.--.| ||. .++.||..=
T Consensus 332 EGEFERV---GG~-----~TlKVdVRl 350 (574)
T TIGR01817 332 EGEFERV---GGN-----RTLKVDVRL 350 (574)
T ss_pred CCCEEEE---CCC-----EEEEEEEEE
T ss_conf 1002532---787-----248873678
No 194
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.43 E-value=0.00037 Score=49.68 Aligned_cols=23 Identities=52% Similarity=0.641 Sum_probs=16.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 68358840733217699999998
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk 135 (424)
++-|.|+||||||||-.+=.||-
T Consensus 194 ~~vi~lvGPTGVGKTTTiAKLAa 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 72799977888757889999999
No 195
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00016 Score=52.24 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEE-HHHHHHH-HHHH---CCCC--CCCHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871853131-0122111-1110---3556--3303577887654-2277654223332
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTM-ADATTLT-EAGY---VGED--VENIILKLLQAAD-YNVERAQRGIVYI 184 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~-vdaT~~T-E~GY---vG~D--vesii~~L~~~a~-~~v~~a~~~iv~i 184 (424)
+.-.||.||-|+|||.+|+.+|+.++-+-.. .+..... ..-+ .+.+ ++. ++++++... .......+.+..+
T Consensus 20 sHAYLF~G~~G~Gk~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~id~~~~~i~~~~-i~~~i~~~~~~~~~~~~~Kv~II 98 (303)
T PRK07132 20 SHSFLLKSNYNNDLDESILYFLNKFNNLQSLNLNLEELPYNIFLFDIFDEDLSKEE-FLSAIEKFSFSSFVSNQKKILII 98 (303)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHH-HHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 61688678998679999999999972998788875456532304133222001688-99999999736655687069998
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 233320023333334432102568988753105870
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
||+++.+.. .+|+|||.+|..-
T Consensus 99 dea~~lt~~--------------A~NaLLKtLEEPp 120 (303)
T PRK07132 99 KNIEKTSNS--------------SLNALLKTIEEPS 120 (303)
T ss_pred ECHHHCCHH--------------HHHHHHHHCCCCC
T ss_conf 165533999--------------9999998703898
No 196
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0016 Score=45.25 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=105.7
Q ss_pred HHHHHCCCHHHH--HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHHCCCEEE---HHH
Q ss_conf 974203085999--99-99999986588752121013552256835884-073321769999999871853131---012
Q gi|254780271|r 74 VLDEYVIGQGQA--KK-VLAVAVHNHYKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARIIDVPFTM---ADA 146 (424)
Q Consensus 74 ~Ld~yVIGQ~~A--Kk-avAvAv~nh~rR~~~~~~~~~~ei~~~NILli-GPTGvGKTelAr~LAk~l~~PF~~---vda 146 (424)
-.|.||+|-... -. +.+|| ..+..... .+=|=||| ||+|.|||.|.++++..+.-|-.+ +.+
T Consensus 109 tFd~FVvG~~N~lA~~aa~~va--------~~~~~~~g---~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvta 177 (455)
T PRK12422 109 TFANFLVTPENDLPFRILQEFA--------KVSEQGKG---FPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSS 177 (455)
T ss_pred CCCCEEECCCCHHHHHHHHHHH--------HCCCCCCC---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 3558331586099999999998--------37553588---767875887899997899999999985379986999749
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 21111110355633035778876542277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 147 TTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 147 T~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
..||. .|+ .++-..-+ ....-+....-++++|.|.-++.+ ++.|+.|+..+..-..
T Consensus 178 e~F~~-~~v----~ai~~~~~--~~Fr~~yr~~DvLLIDDIQfl~gK------------~~tqeEff~tfN~L~~----- 233 (455)
T PRK12422 178 ELFTE-HLV----SAIRSGEM--QRFRSFYRNVDALFIEDIEVFSGK------------GATQEEFFHTFNSLHT----- 233 (455)
T ss_pred HHHHH-HHH----HHHHCCCH--HHHHHHHHCCCEEEEEHHHHHHCC------------HHHHHHHHHHHHHHHH-----
T ss_conf 99999-999----99975889--999999963887763147887284------------8899999999999998-----
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
..-.+|-|++- .|.+|. ||-+-|..|
T Consensus 234 -------~~KQIVitsDr---------------------------------------------~P~el~--~l~~RL~SR 259 (455)
T PRK12422 234 -------EGKLIVISSSY---------------------------------------------APGDLK--AMEERLISR 259 (455)
T ss_pred -------CCCEEEEECCC---------------------------------------------CHHHHH--HHHHHHHHH
T ss_conf -------59969996898---------------------------------------------957651--268999988
Q ss_pred C--CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7--84267211105789999874267799999999874498999968999999995510678742368999999677740
Q gi|254780271|r 307 L--PVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMF 384 (424)
Q Consensus 307 l--PiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimF 384 (424)
| ...|.+++.+.|....||.. ..+..|+ .++++++++||+.- ..-.|.|...+.++..-++|
T Consensus 260 f~~GL~v~I~~Pd~etr~~Il~~-----------k~~~~~~--~l~~ev~~~iA~~i---~~niReLeGal~~l~~~~~~ 323 (455)
T PRK12422 260 FEWGIAIPIHPLTREGLRSFLMR-----------QAEQLSI--RIEETALDFLIQAL---SSNVKTLLHALTLLAKRVAY 323 (455)
T ss_pred HHCCEEECCCCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 63761321689998999999999-----------9987188--88446899999997---55179999999999999998
Q ss_pred C
Q ss_conf 2
Q gi|254780271|r 385 E 385 (424)
Q Consensus 385 e 385 (424)
.
T Consensus 324 ~ 324 (455)
T PRK12422 324 K 324 (455)
T ss_pred H
T ss_conf 7
No 197
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.42 E-value=0.00015 Score=52.45 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 683588407332176999999987185313101
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
.+-|+..|++|||||.+++.||+.++.||+-.|
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegD 35 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGD 35 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 857999828989989999999999598776234
No 198
>KOG1808 consensus
Probab=97.40 E-value=0.00051 Score=48.71 Aligned_cols=118 Identities=30% Similarity=0.423 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH---HHHHHHH-H-HCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_conf 683588407332176999999987185313101---2211111-1-035563303577---8876542277654223332
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD---ATTLTEA-G-YVGEDVENIILK---LLQAADYNVERAQRGIVYI 184 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd---aT~~TE~-G-YvG~Dvesii~~---L~~~a~~~v~~a~~~iv~i 184 (424)
+.-||+.||||+|||=|..-||+.++--|+..- -|.+.|. | |+-.+-+.+..+ |++++.. --.+++
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~------G~~~vl 513 (1856)
T KOG1808 440 KFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN------GDWIVL 513 (1856)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHEECCCCCEEEEHHHHHHHHHH------CCEEEE
T ss_conf 99867754767681159999999854673420024633399998665007889725534689999870------877984
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEECCCCCCCCCCCCCEEEEECCHHHHHHHC
Q ss_conf 2333200233333344321025689887531058-70102565564322243024310001232200
Q gi|254780271|r 185 DEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG-TIASVPPQGGRKHPQQEFLQVDTTNILFICGG 250 (424)
Q Consensus 185 DEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg-~~~~v~~~~grk~~~~~~~~Idt~nilfi~~g 250 (424)
||+.-+.. +|..+|.++++. ....+|....--+++.++..+.|.|..-..+|
T Consensus 514 D~lnla~~--------------dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~g 566 (1856)
T KOG1808 514 DELNLAPH--------------DVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGG 566 (1856)
T ss_pred CCCCCCCH--------------HHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHCCCCCCCCH
T ss_conf 02012406--------------789999840454041256344323224701234543077666531
No 199
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.38 E-value=0.00015 Score=52.37 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 683588407332176999999987185313101
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
+.=|+..|++|||||.|++.||+.++.||+-.|
T Consensus 8 ~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegD 40 (177)
T PRK11545 8 HHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGD 40 (177)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 759999847989999999999998199855365
No 200
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00042 Score=49.34 Aligned_cols=24 Identities=46% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 568358840733217699999998
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk 135 (424)
..+-|.|+||||||||-..=.||.
T Consensus 209 ~~~vvalVGPTGVGKTTTiAKLAA 232 (412)
T PRK05703 209 QGGVVALVGPTGVGKTTTLAKLAA 232 (412)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 673699988888756769999999
No 201
>KOG0991 consensus
Probab=97.34 E-value=0.00046 Score=49.00 Aligned_cols=115 Identities=30% Similarity=0.361 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 98789999974203085999999999998658875212101355225683588407332176999999987185313101
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
..|..+.+ |||-++.--.++|-.+ +-.-.|+++-||.|+|||.-+..||+.|=.|-.+--
T Consensus 21 YrP~~l~d-----IVGNe~tv~rl~via~---------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991 21 YRPSVLQD-----IVGNEDTVERLSVIAK---------------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred HCCHHHHH-----HHCCHHHHHHHHHHHH---------------CCCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHH
T ss_conf 08529988-----2177989999999997---------------289986675279998616489999999838066657
Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 22111111035563-3035778876542277--654223332233320023333334432102568988753105
Q gi|254780271|r 146 ATTLTEAGYVGEDV-ENIILKLLQAADYNVE--RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217 (424)
Q Consensus 146 aT~~TE~GYvG~Dv-esii~~L~~~a~~~v~--~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkile 217 (424)
.-++.-..--|=|| -+-|.-. |-..|. ...+.||.+||.|- ...|.||+|-+.||
T Consensus 81 vLELNASdeRGIDvVRn~IK~F---AQ~kv~lp~grhKIiILDEADS--------------MT~gAQQAlRRtME 138 (333)
T KOG0991 81 VLELNASDERGIDVVRNKIKMF---AQKKVTLPPGRHKIIILDEADS--------------MTAGAQQALRRTME 138 (333)
T ss_pred HHHCCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCEEEEEEECCCH--------------HHHHHHHHHHHHHH
T ss_conf 6320576554608999999999---8720348998524899615220--------------20689999999999
No 202
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.33 E-value=0.00017 Score=52.04 Aligned_cols=26 Identities=46% Similarity=0.692 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
...||+|.||||+|||.||-.|+..+
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~ 71 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQA 71 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58768998999987899999999999
No 203
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=97.33 E-value=0.00031 Score=50.26 Aligned_cols=215 Identities=21% Similarity=0.343 Sum_probs=124.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 835884073321769999999871---853131012211111----1035563303577887654227765422333223
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTEA----GYVGEDVENIILKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE~----GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
+-||.||==|+||=+||.||.=+. +-|||+++|..+.|. ---|.+-+.= .---..-.+-=|+|.-|.+|+||
T Consensus 23 rPVLiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGHEaGAF-TGA~~rh~GRFERAdGGTLFLDE 101 (349)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGHEAGAF-TGAKKRHEGRFERADGGTLFLDE 101 (349)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCH-HHHCCCCCCCCEECCCCCCHHHH
T ss_conf 86688614674689999885332465548862661012782555566531001001-30304688985443688738888
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf 33200233333344321025689887531058701025655643222430243100012322000467898876412343
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKA 266 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~ 266 (424)
+=-.... ||.-||+++|-+. ..--||.+.-+.+-+.|=-+|- .|-.....-
T Consensus 102 lAtas~~--------------VQEKLLRViEYG~--fERVGG~~~l~vDVRlvaATN~---------DLP~lA~~G---- 152 (349)
T TIGR02974 102 LATASLA--------------VQEKLLRVIEYGE--FERVGGSQTLKVDVRLVAATNA---------DLPALAAEG---- 152 (349)
T ss_pred HHCCCHH--------------HHHHHHHHHCCCC--EEECCCCCEEEECCEEEECCCC---------CHHHHHHCC----
T ss_conf 7142167--------------6786612010130--3301786047735136762141---------369898658----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 33211110000000168999641056777522068987207842672111057899998742677999999998744-98
Q gi|254780271|r 267 SIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDME-DV 345 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~e-gV 345 (424)
.|. .++|.-..+ |.+ .+|=|.-|-.- |+ .|=..|---|..| +.
T Consensus 153 --~FR-----------aDLLDRLAF-DVi---~LPPLR~R~~D--------------I~-----lLAe~FA~~Ma~EL~~ 196 (349)
T TIGR02974 153 --RFR-----------ADLLDRLAF-DVI---TLPPLRERQED--------------IM-----LLAEHFAIRMARELGL 196 (349)
T ss_pred --CCC-----------CHHHHHHHH-HHC---CCCCCCCCCCC--------------HH-----HHHHHHHHHHHHHHCC
T ss_conf --984-----------014554456-550---79788887232--------------78-----9999999999997078
Q ss_pred E--EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECH
Q ss_conf 9--99968999999995510678742368999999677740276789841999837
Q gi|254780271|r 346 E--LVFHEDALREIARCAIAHKTGARGLRSILEKILLDTMFELPMLKGVSSVIISD 399 (424)
Q Consensus 346 ~--L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLedimFe~P~~~~~~~v~Id~ 399 (424)
+ .-||+.|.+.|-...|==|+ |=||.++|+-+--...+. .-+..|+||-
T Consensus 197 ~~F~GFt~~A~~~L~~Y~WPGNv--RELkNvvERsVyR~~~~~---~~i~~i~~dP 247 (349)
T TIGR02974 197 PLFPGFTPQAREQLLEYHWPGNV--RELKNVVERSVYRHGREE---APIEEIIIDP 247 (349)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHCCCCC---CCHHHEEECC
T ss_conf 65511438999999706888852--124446766653058766---4201201077
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.0013 Score=45.86 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 987899999742030859999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
..|+-...-.|.|.+--+..++|++.|.+ |.- + ... ..+++||.||.|+|||.||-.+|+.+
T Consensus 59 I~~~~~~~~Feny~~~~~~q~~al~~a~~--y~e-n-f~~------~~~gLlF~G~~GTGKThLA~aIan~L 120 (242)
T PRK07952 59 IRPLHQNCSFENYRVECEGQMNALSKARQ--YVE-E-FDG------NIASFIFSGKPGTGKNHLAAAICNEL 120 (242)
T ss_pred CCHHHHCCEEECEECCCHHHHHHHHHHHH--HHH-H-HCC------CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98577288421201587778999999999--998-6-543------88717997899997899999999999
No 205
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00031 Score=50.19 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
Q ss_conf 6835884073321769999999871853131012211111103556330
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVEN 161 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dves 161 (424)
|+=|+++|||+||||-||=.||+.++++.+-+|.-.. |-|=|+.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv----Yr~mdIGT 47 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV----YRGLDIGT 47 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHH----CCCCCCCC
T ss_conf 6379998988757789999999982992893023553----18886307
No 206
>KOG0736 consensus
Probab=97.22 E-value=0.0026 Score=43.73 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=59.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 35884073321769999999871853131012211111103556330357788765422776542233322333200233
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKS 194 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~ 194 (424)
-+|+-||+|||||.+.|..|+.++.++..+|+.+++-. ..+-..--+.+-....++.+..++|+--.|-+....
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~------s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE------SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHC------CCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECC
T ss_conf 79986799987579999999983872570138988643------633137899999998752686289872242455337
Q ss_pred CCCCCCCCCCHHHHHHHHHH
Q ss_conf 33334432102568988753
Q gi|254780271|r 195 DNPSITRDVSGEGVQQALLK 214 (424)
Q Consensus 195 ~~~~~~~dvs~~gvq~~LLk 214 (424)
++ ..|.-.-.+.+.++.
T Consensus 507 dg---ged~rl~~~i~~~ls 523 (953)
T KOG0736 507 DG---GEDARLLKVIRHLLS 523 (953)
T ss_pred CC---CHHHHHHHHHHHHHH
T ss_conf 77---442779999999972
No 207
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.21 E-value=0.00027 Score=50.61 Aligned_cols=62 Identities=37% Similarity=0.513 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH-HHHHC--CC
Q ss_conf 998789999974203085999999999998658875212101355225683588407332176999999-98718--53
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTL-ARIID--VP 140 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~L-Ak~l~--~P 140 (424)
+-+|--=|=-||+|| .-..++-|=|.+.+-. -..++|||-+|=||+|||-||.+| |++.. .|
T Consensus 105 IRkkA~~vfTLDdYV-----~~gimtaaQ~d~l~~A---------v~ar~NIlv~GGTGSGKTTLaNAlla~I~~l~~P 169 (315)
T TIGR02782 105 IRKKAVRVFTLDDYV-----EAGIMTAAQRDVLREA---------VAARKNILVVGGTGSGKTTLANALLAEIAKLNDP 169 (315)
T ss_pred HCCCCCCCCCCHHHH-----HHCCCCHHHHHHHHHH---------HHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 110224104707776-----4044557899999999---------9712988998145885799999999988521699
No 208
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.0014 Score=45.75 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=21.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 2256835884073321769999999871
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
+-.|+.|+|+||||||||-.+=-||..+
T Consensus 72 ~~~~~vI~lvG~~G~GKTTT~AKLA~~~ 99 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998189998889898899999999999
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.17 E-value=0.00036 Score=49.79 Aligned_cols=25 Identities=60% Similarity=0.751 Sum_probs=18.1
Q ss_pred CCCCEEEEECCCCCHHH-HHHHHHHH
Q ss_conf 56835884073321769-99999987
Q gi|254780271|r 112 AKSNILLVGPTGCGKTY-LAQTLARI 136 (424)
Q Consensus 112 ~~~NILliGPTGvGKTe-lAr~LAk~ 136 (424)
.+++|.|+||||||||- ||+--|++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 68579998998875887999999999
No 210
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=97.16 E-value=0.00082 Score=47.25 Aligned_cols=140 Identities=26% Similarity=0.388 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-------EEEHHHHHHHHHHHCC------CCCCC-----------------
Q ss_conf 56835884073321769999999871853-------1310122111111035------56330-----------------
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVP-------FTMADATTLTEAGYVG------EDVEN----------------- 161 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~P-------F~~vdaT~~TE~GYvG------~Dves----------------- 161 (424)
.+.=.||-||.|+||..+|+.+|+.+.-. =-.+..=...+.|=|- .+-.+
T Consensus 13 ~~HA~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~~~Cg~C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~~g~a~ 92 (216)
T TIGR00678 13 LAHAYLFTGPEGVGKELLALALAKALLCEPRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGEEGSAK 92 (216)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC
T ss_conf 88612544488874899999999998077857788888588899987079982378742347777776458976256421
Q ss_pred ------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf ------3----577887654227765422333223332002333333443210256898875310587010256556432
Q gi|254780271|r 162 ------I----ILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKH 231 (424)
Q Consensus 162 ------i----i~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~ 231 (424)
| ||+|.+.....--...+.||+|+..|+.... --|+|||.||.
T Consensus 93 ~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~mn~~--------------AANALLKtLEE------------- 145 (216)
T TIGR00678 93 RRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE------------- 145 (216)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHH--------------HHHHHHHHEEC-------------
T ss_conf 136787872789999999860642147517997673232589--------------89865101012-------------
Q ss_pred CCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEE
Q ss_conf 22430243100012322000467898876412343332111100000001689996410567775220689872078426
Q gi|254780271|r 232 PQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLA 311 (424)
Q Consensus 232 ~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV 311 (424)
|..+.+.|..++- - .|. .+.|=.+-|= .++
T Consensus 146 Pp~~t~fiL~~~~-------~-------------------------------------DP~-----~lLpTI~SRC-q~~ 175 (216)
T TIGR00678 146 PPPNTLFILITHS-------P-------------------------------------DPE-----RLLPTIRSRC-QVL 175 (216)
T ss_pred CCCCEEEEEECCC-------C-------------------------------------CHH-----HHCCCCCCCE-EEE
T ss_conf 7987079885088-------8-------------------------------------843-----3221110320-158
Q ss_pred EECCCCHHHHHHHHHHH
Q ss_conf 72111057899998742
Q gi|254780271|r 312 TLEDLDENSLIRILSEP 328 (424)
Q Consensus 312 ~L~~Lt~edl~rILtep 328 (424)
.|.+|+.+++.++|++.
T Consensus 176 ~f~~l~~~~~~~~L~~~ 192 (216)
T TIGR00678 176 PFPPLSEEALLQWLIEQ 192 (216)
T ss_pred EECCCCHHHHHHHHHHC
T ss_conf 62599889999999970
No 211
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.13 E-value=0.0058 Score=41.31 Aligned_cols=19 Identities=58% Similarity=0.816 Sum_probs=14.0
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 5884073321769999999
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLA 134 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LA 134 (424)
+.|+||||||||-..=.||
T Consensus 179 ~alVGPTGVGKTTTiAKLA 197 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLA 197 (404)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8986688876375899999
No 212
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.12 E-value=0.00058 Score=48.34 Aligned_cols=25 Identities=44% Similarity=0.542 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l 137 (424)
|.=|+|+||||||||-.+=.||..+
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~ 25 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYL 25 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699998999998899999999999
No 213
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0023 Score=44.07 Aligned_cols=182 Identities=20% Similarity=0.269 Sum_probs=85.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
Q ss_conf 97420308599999999999865887521210135522568358-84073321769999999871853131012211111
Q gi|254780271|r 74 VLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA 152 (424)
Q Consensus 74 ~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NIL-liGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~ 152 (424)
-.|.||+|-... -|.|+| ..|.- .+. + +.|-| +-||+|+|||.|++..+..+..-. -.+
T Consensus 85 tFdnFv~g~~N~-~A~aa~--~~va~---~~g--~----~~nplfi~G~~GlGKTHLl~Aign~~~~~~--------~~a 144 (408)
T COG0593 85 TFDNFVVGPSNR-LAYAAA--KAVAE---NPG--G----AYNPLFIYGGVGLGKTHLLQAIGNEALANG--------PNA 144 (408)
T ss_pred CHHHEEECCCHH-HHHHHH--HHHHH---CCC--C----CCCCEEEECCCCCCHHHHHHHHHHHHHHHC--------CCC
T ss_conf 554220477449-999999--99875---668--8----689579987999978999999999998629--------986
Q ss_pred HHCCCCCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 10355633035778876542------277654223332233320023333334432102568988753105870102565
Q gi|254780271|r 153 GYVGEDVENIILKLLQAADY------NVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQ 226 (424)
Q Consensus 153 GYvG~Dvesii~~L~~~a~~------~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~ 226 (424)
.|+.-..+.-..+.+.+.-. .-.. ....+++|.++-++.+ ++.|..+.-++.- +...
T Consensus 145 ~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk------------~~~qeefFh~FN~----l~~~ 207 (408)
T COG0593 145 RVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGK------------ERTQEEFFHTFNA----LLEN 207 (408)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHCCC------------HHHHHHHHHHHHH----HHHC
T ss_conf 488504899899999998850488888764-2673555138675677------------1579999999998----8850
Q ss_pred CCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHC
Q ss_conf 56432224302431000123220004678988764123433321111000000016899964105677752206898720
Q gi|254780271|r 227 GGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGR 306 (424)
Q Consensus 227 ~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GR 306 (424)
.. ..+.|++- .|..|. ++-|-|..|
T Consensus 208 -------~k-qIvltsdr---------------------------------------------~P~~l~--~~~~rL~SR 232 (408)
T COG0593 208 -------GK-QIVLTSDR---------------------------------------------PPKELN--GLEDRLRSR 232 (408)
T ss_pred -------CC-EEEEECCC---------------------------------------------CCHHHC--CCCHHHHHH
T ss_conf -------88-79997078---------------------------------------------832211--035889989
Q ss_pred CC--CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 78--4267211105789999874267799999999874498999968999999995
Q gi|254780271|r 307 LP--VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARC 360 (424)
Q Consensus 307 lP--iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~ 360 (424)
|- .++.+++++.+....||.. .++ .-.+.++++++.+||..
T Consensus 233 ~~~Gl~~~I~~Pd~e~r~aiL~k-----------ka~--~~~~~i~~ev~~~la~~ 275 (408)
T COG0593 233 LEWGLVVEIEPPDDETRLAILRK-----------KAE--DRGIEIPDEVLEFLAKR 275 (408)
T ss_pred HHCEEEEEECCCCHHHHHHHHHH-----------HHH--HCCCCCCHHHHHHHHHH
T ss_conf 86305775279888999999999-----------998--65888887999999997
No 214
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.08 E-value=0.0075 Score=40.53 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=107.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHHHHHHHHHCCC-CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35884073321769999999871--85313101221111110355-63303577-8876542277654223332233320
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII--DVPFTMADATTLTEAGYVGE-DVENIILK-LLQAADYNVERAQRGIVYIDEVDKI 190 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT~~TE~GYvG~-Dvesii~~-L~~~a~~~v~~a~~~iv~iDEidKi 190 (424)
-+|+-|+.|++|.-+++.|+.++ +.||+++=- ..||-..+|- |++.-+.. -.....+-..++..|++|+||++..
T Consensus 27 Gvlirg~~Gtakst~~r~l~~llp~~~p~~~lPl-~~tedrl~G~lDi~~tL~~G~~v~~~GLLa~A~~gvLyvdevnll 105 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPP-GIADDRLLGGLDLAATLRAGRPVAERGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC-CCCHHHHCCCCCHHHHHHCCCEECCCCHHHCCCCCEEEEECHHHC
T ss_conf 1899779995799999999975689998465699-997415147125999997689852575333036998998514737
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 02333333443210256898875310587010256556432224302431000123220004678988764123433321
Q gi|254780271|r 191 SRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGF 270 (424)
Q Consensus 191 ~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~ 270 (424)
... +...|+..++.+...+.-.|-.......+..|-|.+ |.-.
T Consensus 106 ~d~--------------lv~~Ll~a~~~G~~~vEReGiS~~~parf~LIa~de------g~e~----------------- 148 (584)
T PRK13406 106 EPG--------------TAARLAAALDAGEVAIERDGLALRMPARFGLVALDE------GAEE----------------- 148 (584)
T ss_pred CHH--------------HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC------CCCC-----------------
T ss_conf 888--------------999999998548740025876635665058999467------8876-----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 11100000001689996410567775220689872078426721110578999987426779999999987449899996
Q gi|254780271|r 271 SAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFH 350 (424)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~Ft 350 (424)
++. .-|-|.-||-..+.++.+...+.......+ .-+..-+++| -+++++
T Consensus 149 ------------de~-------------~~~~l~dRla~~vd~~~~~~~~~~~~~~~~--~~i~~Ar~~L----~~V~i~ 197 (584)
T PRK13406 149 ------------DER-------------APAALADRLAFHLDLDGLALRDTREFPIDA--DDIAAARARL----AAVRVP 197 (584)
T ss_pred ------------CCC-------------HHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHC----CCCCCC
T ss_conf ------------431-------------107888765070681676666401111236--8999999867----866669
Q ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHH
Q ss_conf 8999999995510678-742368999
Q gi|254780271|r 351 EDALREIARCAIAHKT-GARGLRSIL 375 (424)
Q Consensus 351 deAi~~IA~~A~~~ni-GAR~LrtIi 375 (424)
++.++.|+..|..-++ |-|+.-..+
T Consensus 198 d~~~~~l~~~a~~~gv~g~Ra~i~~~ 223 (584)
T PRK13406 198 PEAIEALCAAAAALGIASLRAPLLAL 223 (584)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999999983998620999999
No 215
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.08 E-value=0.00055 Score=48.49 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=31.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf 3588407332176999999987185313101221
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATT 148 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~ 148 (424)
||.||||-|+|||-+.|.||+.|+.||+=.|.--
T Consensus 2 ~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~~I 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRISEVLDLQFIDMDEEI 35 (488)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH
T ss_conf 4999899999877999999998397956477999
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.00043 Score=49.23 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH
Q ss_conf 6835884073321769999999871---8531310122111
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT 150 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T 150 (424)
..|+||.||||+|||.||-.+|+.+ +...+-+-|+.|.
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~ 223 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI 223 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 88669889999988999999999999879949996299999
No 217
>KOG0478 consensus
Probab=97.07 E-value=0.00019 Score=51.63 Aligned_cols=92 Identities=35% Similarity=0.456 Sum_probs=58.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCE-EE---HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8358840733217699999998718531-31---0122111111035563303577887654227765422333223332
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPF-TM---ADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF-~~---vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidK 189 (424)
.||||+|-.|.||+-|-+..++++.--- +- .-|.-+| -||-+|+++ +.|+.++.-.| .+-.|+-+|||+||
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLT--ayVtrd~dt--kqlVLesGALV-LSD~GiCCIDEFDK 537 (804)
T KOG0478 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLT--AYVTKDPDT--RQLVLESGALV-LSDNGICCIDEFDK 537 (804)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHCCE--EEEEECCCC--CEEEEECCCEE-ECCCCEEECHHHHH
T ss_conf 22899469986789999999974775404058763022003--567765765--54665048489-72896577112333
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECC
Q ss_conf 00233333344321025689887531058701025
Q gi|254780271|r 190 ISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVP 224 (424)
Q Consensus 190 i~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~ 224 (424)
.... .+..|+++||--.++++
T Consensus 538 M~dS--------------trSvLhEvMEQQTvSIA 558 (804)
T KOG0478 538 MSDS--------------TRSVLHEVMEQQTLSIA 558 (804)
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHH
T ss_conf 3277--------------88999999987631174
No 218
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=97.05 E-value=0.00048 Score=48.87 Aligned_cols=34 Identities=32% Similarity=0.594 Sum_probs=30.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 5884073321769999999871853131012211
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~ 149 (424)
|.+.|||+||||-||=.||+-++|-.+-+|--..
T Consensus 2 i~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qi 35 (307)
T TIGR00174 2 IVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQI 35 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHH
T ss_conf 6774088554778999988768957874350232
No 219
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=97.05 E-value=0.0056 Score=41.44 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=29.9
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 89872078426721110578999987426779999999987449899996899999999
Q gi|254780271|r 301 PEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359 (424)
Q Consensus 301 PEl~GRlPiiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~ 359 (424)
.-|-||... +.|+||+.++....+. ..|+..|+ .++++.++++-.
T Consensus 167 ~plygR~~~-i~l~p~~~~~~~efl~-----------~~f~e~~~--~~~~~~~~~iy~ 211 (223)
T pfam01637 167 SPLYGRHRW-ALLKPFDFETAWNFLR-----------EGFEELYE--PGPKEEFEEVWR 211 (223)
T ss_pred CCCCCCCCE-EEECCCCHHHHHHHHH-----------HHHHHHCC--CCCHHHHHHHHH
T ss_conf 653575022-7726899899999999-----------99998478--999899999999
No 220
>KOG2680 consensus
Probab=97.04 E-value=0.0013 Score=45.88 Aligned_cols=63 Identities=30% Similarity=0.506 Sum_probs=48.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEHHHHH
Q ss_conf 420308599999999999865887521210135522568358840733217699999998718--5313101221
Q gi|254780271|r 76 DEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID--VPFTMADATT 148 (424)
Q Consensus 76 d~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~--~PF~~vdaT~ 148 (424)
.+-.|||-.|.||..|-+ +-++.. .|.-.-||+-||.|+|||-||--+|+-|+ .||.-.-+|.
T Consensus 39 s~GmVGQ~~AR~Aagvi~----kmi~eg------kiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSE 103 (454)
T KOG2680 39 SEGMVGQVKARKAAGVIL----KMIREG------KIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSE 103 (454)
T ss_pred CCCCHHHHHHHHHHHHHH----HHHHCC------CCCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCE
T ss_conf 666311588888767999----998728------63213899724898884410000245407887503650222
No 221
>PRK09087 hypothetical protein; Validated
Probab=97.03 E-value=0.0009 Score=46.99 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 99878999997420308599999999999865887521210135522568-3588407332176999999987185313
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKS-NILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~-NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
++-|..-..-+|.|+||...+ .|+++-.+|-- . |+ -+.+.||.|||||.|++..++..++.++
T Consensus 10 l~l~~~~~~~~dnF~vs~~N~---~a~~~l~~~~~-----w-------~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~ 73 (226)
T PRK09087 10 LNFSHQPGYGRDDLVVTESNR---AAVSLVDRWPN-----W-------PSPVVVLAGPVGSGKTHLASIWREKADALLV 73 (226)
T ss_pred ECCCCCCCCCCCCEEECCCHH---HHHHHHHHCCC-----C-------CCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 589998778733647757699---99999984726-----7-------7775899899999886999999998099683
No 222
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.03 E-value=0.00077 Score=47.46 Aligned_cols=23 Identities=52% Similarity=0.606 Sum_probs=18.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35884073321769999999871
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l 137 (424)
=|+|+||||||||-..=.||..+
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999998899999999999
No 223
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=97.00 E-value=0.0039 Score=42.56 Aligned_cols=64 Identities=28% Similarity=0.414 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 26998789999974203085999999999--9986588752121013552256835884073321769999999871
Q gi|254780271|r 63 EGIPNPQEILRVLDEYVIGQGQAKKVLAV--AVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 63 ~~~~tP~eI~~~Ld~yVIGQ~~AKkavAv--Av~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
..++.-..|....-.+=||-..|+.+++- .+++|=++. -..|+|++||||.|||.|+++.++.-
T Consensus 20 ~~ls~~eRI~~i~~~rWIgY~~A~~~L~~Le~Ll~~P~~~-----------Rmp~lLlvGdsnnGKT~Iv~rF~~~h 85 (302)
T pfam05621 20 ARLPADERIQRIRADRWIGYPRAVEALNRLEALYAWPNKQ-----------RMPNLLLVGPTNNGKSMIVEKFRRAH 85 (302)
T ss_pred HCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC-----------CCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 7599899999975785327789999999999998468646-----------88755887079887899999999967
No 224
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.94 E-value=0.0022 Score=44.31 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=52.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68358840733217699999998718531310122111111035563303577887654227
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNV 174 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v 174 (424)
-++|+++||--+|||-|+|.||+..+.|++.-=|-.|.+.-+.|.+..--..|+...|.+..
T Consensus 231 vKkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ~ 292 (411)
T PRK08099 231 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGHA 292 (411)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 36899989998888999999999978995189899999997189745688889999999999
No 225
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.92 E-value=0.0017 Score=45.02 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=63.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEHH
Q ss_conf 42030859999999999986588752121---------013552256835884073321769999999871853-13101
Q gi|254780271|r 76 DEYVIGQGQAKKVLAVAVHNHYKRLAHSS---------KSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-FTMAD 145 (424)
Q Consensus 76 d~yVIGQ~~AKkavAvAv~nh~rR~~~~~---------~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-F~~vd 145 (424)
.--|.|-++-||.+.-.+.---+...... ...+-+| ||||+|-.|++|.-|.+-.+++.--- |+-.
T Consensus 450 APSI~~~~dvKkgillqLFGg~~k~~~~~~~~~~~~~~~~~RgdI---niLl~GDPgtaKSQlL~yv~~iaPRgvytsG- 525 (916)
T PTZ00111 450 APSIKARNNVKIGLLCQLFSCNANSSDNNKSPDACYKVDNFRGII---NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSG- 525 (916)
T ss_pred CCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE---EEEEECCCCCCHHHHHHHHHHHCCCEEEECC-
T ss_conf 862115226999999998488754567787765444444434540---5999579960189999999972874267459-
Q ss_pred HHHHHHHH---HCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22111111---035-5633035778876542277654223332233320023
Q gi|254780271|r 146 ATTLTEAG---YVG-EDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRK 193 (424)
Q Consensus 146 aT~~TE~G---YvG-~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~ 193 (424)
.--|-+| ||- +|.++- +++-.+ +..-.+-.|+.+|||+||....
T Consensus 526 -kgsSavGLTA~v~~~d~~tg--~~~LEa-GALVLaD~GvccIDEFDKM~~~ 573 (916)
T PTZ00111 526 -KSSSSVGLTASIKFNESDNG--RAMIQP-GAVVLANGGVCCIDELDKCHNE 573 (916)
T ss_pred -CCCCCCCCEEEEEECCCCCC--CEEEEC-CCEEECCCCEEEEEHHHCCCHH
T ss_conf -86542264689983268878--689854-8089727987996222036856
No 226
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.90 E-value=0.012 Score=39.20 Aligned_cols=213 Identities=20% Similarity=0.287 Sum_probs=117.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHHC-------C-C
Q ss_conf 99999742030859999999999986588752121013552256835884-0733217699999998718-------5-3
Q gi|254780271|r 70 EILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLV-GPTGCGKTYLAQTLARIID-------V-P 140 (424)
Q Consensus 70 eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILli-GPTGvGKTelAr~LAk~l~-------~-P 140 (424)
++.....+|+-+-++-.+-+---+..-.+ .. .-.++|.| |..|+|||...+..-+.|. . |
T Consensus 260 k~~~~vpe~lpcRe~E~~~I~~Fie~~i~-----q~------GtG~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~ 328 (650)
T PTZ00112 260 KLQLVVPEYILGREKEAKEIRTFLETGIK-----QG------GTGQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPW 328 (650)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCC-----CC------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 10125774477707899999999986411-----68------86656999789999800369999999999997089998
Q ss_pred --EEEHHHHHHHHHH--H-------CCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf --1310122111111--0-------355633035--77887654227765422333223332002333333443210256
Q gi|254780271|r 141 --FTMADATTLTEAG--Y-------VGEDVENII--LKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEG 207 (424)
Q Consensus 141 --F~~vdaT~~TE~G--Y-------vG~Dvesii--~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~g 207 (424)
|+-+.+-++|++. | .|....+-. .++++.--. ......++++||.|-+..+
T Consensus 329 F~fVEINGMkLt~P~qaY~~L~e~Ltg~k~~~~~~A~~lL~k~F~--~~r~p~VlLvDELD~LvTk-------------- 392 (650)
T PTZ00112 329 FNLFEINGVNLVHPNAAYRVFYKKLFNKKPPNALNSYKELDKLFN--NNRTPSILIVDEADYIVTK-------------- 392 (650)
T ss_pred CEEEEECCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCCCEEEEECHHHHHHHC--------------
T ss_conf 159997363779878899999999848988867899999999826--8997189997157777636--------------
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89887531058701025655643222430243100012322000467898876412343332111100000001689996
Q gi|254780271|r 208 VQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLR 287 (424)
Q Consensus 208 vq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (424)
-|+.|.-+++= | .++....+.|-..|.
T Consensus 393 kQ~VlYNLFdW-----P-----T~~~SkLIVIaIANT------------------------------------------- 419 (650)
T PTZ00112 393 TQKVLFTLFDW-----P-----TKKNSKLILIIISNT------------------------------------------- 419 (650)
T ss_pred CCCEEEECCCC-----C-----CCCCCEEEEEEEEEC-------------------------------------------
T ss_conf 77457773668-----8-----988870799998506-------------------------------------------
Q ss_pred HHHHHHHHHHCHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf 410567775220689872078-4267211105789999874267799999999874498999968999999995510678
Q gi|254780271|r 288 NLESEDLVKFGLIPEFIGRLP-VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKT 366 (424)
Q Consensus 288 ~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~ni 366 (424)
+||=.. |+|-.+.||. .|+.|.|-+.++|.+|+..- | .+++ .|.++|++..|++-+.-.-
T Consensus 420 ----MDLPER-L~~RVsSRLGltRltF~PYt~~QL~eII~sR----------L---~~~~-~f~~dAIQl~ARKVAavSG 480 (650)
T PTZ00112 420 ----MDLPYK-MKPSCRSRLAFGRLVFSPYKYQQIEKVIKER----------L---ENCE-IIDHTALQLCARRVTNYSG 480 (650)
T ss_pred ----CCCCHH-HHHHHHHHCCCCEECCCCCCHHHHHHHHHHH----------H---CCCC-CCCHHHHHHHHHHHHHHCC
T ss_conf ----786065-6666555228850043998999999999998----------6---2677-7887899999888875031
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 742368999999677
Q gi|254780271|r 367 GARGLRSILEKILLD 381 (424)
Q Consensus 367 GAR~LrtIiE~iLed 381 (424)
-|||--.|+-+.++.
T Consensus 481 DARRALdICRRAvE~ 495 (650)
T PTZ00112 481 DMRKALQICKLAFEN 495 (650)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 489999999999973
No 227
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.90 E-value=0.00078 Score=47.40 Aligned_cols=27 Identities=48% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
..+|||..||||+|||.+.+.|+..++
T Consensus 24 ~~~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 599899989999989999999996133
No 228
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00082 Score=47.26 Aligned_cols=27 Identities=44% Similarity=0.859 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 835884073321769999999871853
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
.+|+++||+|+|||.+|+.||+.++.|
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 979998999998899999999976997
No 229
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=96.90 E-value=0.0016 Score=45.19 Aligned_cols=135 Identities=28% Similarity=0.456 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-------CCCE--------EE
Q ss_conf 30859999999999986588752121013552256835884073321769999999871-------8531--------31
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-------DVPF--------TM 143 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-------~~PF--------~~ 143 (424)
|||||+.|+||=... + +..|. =+|.-|.=|+||+-.||.|+.+| +-|| -.
T Consensus 6 iVGQe~LK~ALLL~A------v-------~P~iG--GVLirG~KGTAKSTaaR~L~~LLP~i~~v~gC~f~cdP~~P~~~ 70 (688)
T TIGR02442 6 IVGQEDLKLALLLNA------V-------NPRIG--GVLIRGEKGTAKSTAARGLAALLPDIDVVAGCPFSCDPDDPEEW 70 (688)
T ss_pred CCCHHHHHHHHHHEE------E-------CCCCC--EEEEECCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 214279865321002------5-------26637--07887788862789888487616023664047888777887040
Q ss_pred H-HHHHHHH-HH----------------------HCCC-CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0-1221111-11----------------------0355-6330357788-765422776542233322333200233333
Q gi|254780271|r 144 A-DATTLTE-AG----------------------YVGE-DVENIILKLL-QAADYNVERAQRGIVYIDEVDKISRKSDNP 197 (424)
Q Consensus 144 v-daT~~TE-~G----------------------YvG~-Dvesii~~L~-~~a~~~v~~a~~~iv~iDEidKi~~~~~~~ 197 (424)
+ +|..-++ .| -||. |++.-+..-. ....+-...|.+||+||||+--+.-.
T Consensus 71 C~~C~~~~~~~G~~~~~~~~~~~V~LPlgATEDRVvG~LDi~~al~~G~~~FqPGLLA~AhrGiLYiDEVNLLdDh---- 146 (688)
T TIGR02442 71 CEECRRKLEEQGTLPSEQRPVPFVNLPLGATEDRVVGSLDIERALKEGEKAFQPGLLAEAHRGILYIDEVNLLDDH---- 146 (688)
T ss_pred CHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCHHHHCCCCHHHHCCCEEEEEEECCCCCH----
T ss_conf 0676755520477531358735886587752332213054899987185660788617546871678520014414----
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC-CCCCCCEEEEECCH
Q ss_conf 34432102568988753105870102565564-32224302431000
Q gi|254780271|r 198 SITRDVSGEGVQQALLKIMEGTIASVPPQGGR-KHPQQEFLQVDTTN 243 (424)
Q Consensus 198 ~~~~dvs~~gvq~~LLkileg~~~~v~~~~gr-k~~~~~~~~Idt~n 243 (424)
+=+.||--..-+...|.-.|-- .|| -.++.|=|.|
T Consensus 147 ----------lVD~lLDaaA~G~n~VEREG~S~~Hp-arf~L~GTMN 182 (688)
T TIGR02442 147 ----------LVDVLLDAAAMGVNRVEREGLSVSHP-ARFVLIGTMN 182 (688)
T ss_pred ----------HHHHHHHHHHCCCEEEEECCCCHHCH-HHHHHHCCCC
T ss_conf ----------77899998764800676357430011-4553220378
No 230
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0047 Score=41.99 Aligned_cols=24 Identities=50% Similarity=0.671 Sum_probs=17.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 568358840733217699999998
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk 135 (424)
.++=|.|+||||||||-..=-||.
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa 196 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 762899989988757879999999
No 231
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.88 E-value=0.00077 Score=47.44 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.++|||..|+||+|||.+++.|+..+.
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 487199988889889999999983589
No 232
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0026 Score=43.74 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=15.7
Q ss_pred CCEEEEECCCCCHHHH-HHHHHH
Q ss_conf 8358840733217699-999998
Q gi|254780271|r 114 SNILLVGPTGCGKTYL-AQTLAR 135 (424)
Q Consensus 114 ~NILliGPTGvGKTel-Ar~LAk 135 (424)
.-|-|+||||||||-. |+--|+
T Consensus 242 q~IALVGPTGVGKTTTIAKLAAr 264 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 17999899998889999999999
No 233
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.86 E-value=0.00095 Score=46.81 Aligned_cols=29 Identities=45% Similarity=0.579 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 56835884073321769999999871853
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
.+.|||..||||+|||.+.+.|...+..+
T Consensus 138 ~~~~ilIsG~TGSGKTT~l~all~~i~~~ 166 (283)
T pfam00437 138 ARGNILVSGGTGSGKTTLLYALLNEINTD 166 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 19759998899998899999999840877
No 234
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.85 E-value=0.0058 Score=41.34 Aligned_cols=167 Identities=18% Similarity=0.315 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHCCHHCCCCCCHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 99998987421000000269987899999-74203085999999999998658875212101355225683588407332
Q gi|254780271|r 46 CMDIIREENKSSITKSHEGIPNPQEILRV-LDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGC 124 (424)
Q Consensus 46 ~~~i~~~e~~~~~~~~~~~~~tP~eI~~~-Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGv 124 (424)
|...+..+......+....+--|++|... |+.+.+-......|+.-|. .+-.-- .+ + -..+-+++-||-||
T Consensus 97 c~~~~~~~~~~~~~~~i~s~~mpk~i~~as~~d~~~~d~~R~~a~~~a~--~F~~~y-~~---~--~~~kGlyl~G~~G~ 168 (306)
T PRK08939 97 TPEKIEADEERAIEERIQSIYMPKDLLQATLADIDLDDLDRLDALMAAL--DFLEAY-KP---G--EKVKGLYLYGDFGV 168 (306)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHHHHH--HHHHHH-CC---C--CCCCEEEEECCCCC
T ss_conf 8999999999999998776357799980989864889778999999999--999973-76---9--88877889899999
Q ss_pred CHHHHHHHHHHHH---CCCEEEHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1769999999871---853131012211111---1035563303577887654227765422333223332002333333
Q gi|254780271|r 125 GKTYLAQTLARII---DVPFTMADATTLTEA---GYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPS 198 (424)
Q Consensus 125 GKTelAr~LAk~l---~~PF~~vdaT~~TE~---GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~ 198 (424)
|||.||-.+|..+ +.+.+.+-+..|..- .| +.+ + ..+.++. ++ .--++.+|.+-.
T Consensus 169 GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~-~d~--s-~~~~i~~----~k--~~~vLiLDDiGa--------- 229 (306)
T PRK08939 169 GKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAI-SDG--S-VKEKIDA----VK--EAPVLMLDDIGA--------- 229 (306)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH-CCC--C-HHHHHHH----HH--CCCEEEEECCCC---------
T ss_conf 899999999999998699299987599999999986-489--8-8999999----84--499899844465---------
Q ss_pred CCCCCCHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 443210256898875-31058701025655643222430243100012322000467898876
Q gi|254780271|r 199 ITRDVSGEGVQQALL-KIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIS 260 (424)
Q Consensus 199 ~~~dvs~~gvq~~LL-kileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~ 260 (424)
+-..+.+...+| -|++.... .+.-++-|||. .+.+|+....
T Consensus 230 ---E~~t~W~rd~vl~~IL~~Rm~------------~~lPTffTSN~------~~~eLe~~l~ 271 (306)
T PRK08939 230 ---EQMSSWVRDEVLGVILQYRMQ------------EELPTFFTSNF------DFDELEHHLA 271 (306)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHH------------CCCCEEEECCC------CHHHHHHHHH
T ss_conf ---426777899899999999997------------49997997799------9999999986
No 235
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.0043 Score=42.19 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=45.3
Q ss_pred CCCCHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6998789---9999742030859999999999986588752121013552256835884073321769999999871853
Q gi|254780271|r 64 GIPNPQE---ILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 64 ~~~tP~e---I~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
.+.|-.| ++.+|=+- ++-+.||| |--|||++.... |.=||+=|+||||||.||.-||.-|+.+
T Consensus 51 ~~v~~~eir~~~~~l~~k-~~~e~a~r------Y~lwR~ir~~~~-------p~IILIGGasGVGkStIA~ElA~rLgI~ 116 (299)
T COG2074 51 RLVTKDEIREVYQKLLEK-GDPEVAKR------YLLWRRIRKMKR-------PLIILIGGASGVGKSTIAGELARRLGIR 116 (299)
T ss_pred EEEEHHHHHHHHHHHHHH-CCHHHHHH------HHHHHHHHCCCC-------CEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 276199999999999873-28799999------999999861578-------7599961788777257999999972986
Q ss_pred EEE
Q ss_conf 131
Q gi|254780271|r 141 FTM 143 (424)
Q Consensus 141 F~~ 143 (424)
-++
T Consensus 117 ~vi 119 (299)
T COG2074 117 SVI 119 (299)
T ss_pred EEE
T ss_conf 100
No 236
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=96.81 E-value=0.00096 Score=46.78 Aligned_cols=29 Identities=45% Similarity=0.834 Sum_probs=22.8
Q ss_pred CCCCCC---EEEE-ECCCCCHHHHHHHHHHHHC
Q ss_conf 225683---5884-0733217699999998718
Q gi|254780271|r 110 ELAKSN---ILLV-GPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N---ILli-GPTGvGKTelAr~LAk~l~ 138 (424)
|-.|+- |||| ||+|||||...+-|||.+.
T Consensus 111 e~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg 143 (670)
T TIGR00602 111 ESAKKRGGSILLITGPSGCGKSTTIKILSKELG 143 (670)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 045667753788417558844789999988864
No 237
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=96.80 E-value=0.045 Score=35.10 Aligned_cols=208 Identities=20% Similarity=0.297 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CEEEHHHHHHHHHHHCCC
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185-313101221111110355
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV-PFTMADATTLTEAGYVGE 157 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~-PF~~vdaT~~TE~GYvG~ 157 (424)
.+|-+.-|.+|---..+-.+. ....|+||-|.-|+||+-+.|.|-..... -.-.++..+ +
T Consensus 30 L~Gie~Qk~~l~~NT~~F~~G-----------~pAnnvLLwG~RGtGKSSlVKall~~~~~~gLrlIEv~k--------~ 90 (248)
T pfam05673 30 LVGIDRQKEALLRNTEQFLAG-----------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVDK--------D 90 (248)
T ss_pred HCCHHHHHHHHHHHHHHHHCC-----------CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECH--------H
T ss_conf 349399999999999999808-----------986136767689898889999999986314956999878--------8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEE
Q ss_conf 63303577887654227765422333223332002333333443210256898875310587010256556432224302
Q gi|254780271|r 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFL 237 (424)
Q Consensus 158 Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~ 237 (424)
|. ..+-+++... -....+=|||+|.+-=- .++.-...|-.+|||+...-| .+.+
T Consensus 91 ~L-~~Lp~i~~~l---~~~~~kFIiF~DDLSFe-------------~~d~~yk~LKs~LeG~l~~~p---------~Nvl 144 (248)
T pfam05673 91 DL-GDLPDIVDLL---RGRPYRFILFCDDLSFE-------------EGESSYKALKSVLEGGLEARP---------DNVL 144 (248)
T ss_pred HH-CCHHHHHHHH---HCCCCCEEEEECCCCCC-------------CCCHHHHHHHHHHCCCCCCCC---------CEEE
T ss_conf 87-2199999999---64997579996355767-------------897369999999657644688---------7389
Q ss_pred EEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCC
Q ss_conf 43100012322000467898876412343332111100000001689996410567775220689872078426721110
Q gi|254780271|r 238 QVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLD 317 (424)
Q Consensus 238 ~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt 317 (424)
..-|||---++. ..+. +..........+...+ - --|--||.+.+.|.+.+
T Consensus 145 iYaTSNRRHLi~-----------e~~~--------d~~~~~ei~~~d~~eE-----k------lSLsDRFGL~l~F~~~~ 194 (248)
T pfam05673 145 IYATSNRRHLIP-----------EYMS--------DNEGDGEIHPGDAVEE-----K------LSLSDRFGLWLGFHPFD 194 (248)
T ss_pred EEEECCCHHCCC-----------HHHC--------CCCCCCCCCCCHHHHH-----H------HHHHHHCCEEEEECCCC
T ss_conf 998427000363-----------3323--------4777443672557774-----5------34898677178507999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 5789999874267799999999874498999968999999995510678742368999
Q gi|254780271|r 318 ENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSIL 375 (424)
Q Consensus 318 ~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIi 375 (424)
.+++..|+ +.|.+. .|+.+ +++.++.-| ..+...-|.|-=|+.-
T Consensus 195 q~~YL~IV--------~~~~~~---~~~~~--~~e~l~~~A-l~wa~~rg~rSGR~A~ 238 (248)
T pfam05673 195 QDEYLAIV--------RGYAAR---LGLPL--DEEELRREA-LQWALTRGGRSGRTAR 238 (248)
T ss_pred HHHHHHHH--------HHHHHH---CCCCC--CHHHHHHHH-HHHHHHCCCCCHHHHH
T ss_conf 99999999--------999998---29999--989999999-9999983898588799
No 238
>PRK06217 hypothetical protein; Validated
Probab=96.75 E-value=0.0016 Score=45.25 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 8358840733217699999998718531310122111111
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG 153 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~G 153 (424)
+.|+.+|.+|+|||.||++||+.++.|++-.|. -|=+.+
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~-~~W~p~ 40 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD-FFWLPT 40 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC-CEECCC
T ss_conf 679997899887899999999975989686455-535689
No 239
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=96.74 E-value=0.00094 Score=46.84 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=24.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC-----CCEEEHH
Q ss_conf 58840733217699999998718-----5313101
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID-----VPFTMAD 145 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~-----~PF~~vd 145 (424)
|.++|+.|||||.+|..||+.++ ++|+=-|
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yieGD 35 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYIEGD 35 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 96760278628899999999854315788756886
No 240
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0017 Score=45.14 Aligned_cols=99 Identities=30% Similarity=0.490 Sum_probs=67.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56835884073321769999999871853131012211111103556330357788765422776542233322333200
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
.++.+++-||.|+|||.+++.+|.. +++| ..--...-..+|+|...... +.+.+.+. ....+++++|+++.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~a~----~~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRL-RELFEEAE----KLAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHC-CCCC-CCCCCCHHHHHHCCHHHHHH-HHHHHHHH----HCCCCEEEECCCCCCC
T ss_conf 6421000368876503665676512-5410-13565224322205108999-99989998----6397636404433212
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 23333334432102568988753105870
Q gi|254780271|r 192 RKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 192 ~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
+.... .....+..+...|+..+++..
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~~~ 115 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDGLK 115 (494)
T ss_pred CCCCC---CCCHHHHHHHHHHHHHHHCCC
T ss_conf 34444---421045789998998764246
No 241
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=96.70 E-value=0.0016 Score=45.26 Aligned_cols=34 Identities=32% Similarity=0.317 Sum_probs=30.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 5884073321769999999871853131012211
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~ 149 (424)
.|..||||+|||.+|=.||+-.+.|.+-+|.-..
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~Q~ 37 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKETGWPVIVLDRVQC 37 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 8997887777169999999995997796203443
No 242
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.69 E-value=0.0013 Score=45.83 Aligned_cols=27 Identities=44% Similarity=0.732 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.++|||..|+||+|||.++++|..++.
T Consensus 161 ~r~NIlIsGgTGSGKTTllnALl~~IP 187 (343)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (343)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 698899988898619999999996289
No 243
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.68 E-value=0.0016 Score=45.32 Aligned_cols=23 Identities=48% Similarity=0.543 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 83588407332176999999987
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~ 136 (424)
+-|++-|+||||||+|-+.|++.
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976
No 244
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.054 Score=34.53 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHCC------CCCCCH----HHHHHHHHHH-HHH
Q ss_conf 56835884073321769999999871-----8531310122111111035------563303----5778876542-277
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-----DVPFTMADATTLTEAGYVG------EDVENI----ILKLLQAADY-NVE 175 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-----~~PF~~vdaT~~TE~GYvG------~Dvesi----i~~L~~~a~~-~v~ 175 (424)
.|+-+|+.|++||||--++..+|+.+ +.|=-.+..=.....|-+- .+-.++ ++++...... ..+
T Consensus 7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l~~~s~e 86 (262)
T PRK05818 7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 86 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98505664487764699999999986228999999888627867558999779971664557798999999998211400
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6542233322333200233333344321025689887531058
Q gi|254780271|r 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEG 218 (424)
Q Consensus 176 ~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg 218 (424)
...+.|+.++.+|+.. +..+|+|||.+|.
T Consensus 87 ~~g~KV~II~~Ae~Mt--------------~~AANALLKtLEE 115 (262)
T PRK05818 87 SNGKKIYIIYGIEKLN--------------KQSANSLLKLIEE 115 (262)
T ss_pred CCCCEEEEECCHHHHC--------------HHHHHHHHHHHCC
T ss_conf 2884899987778749--------------9999999986128
No 245
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.67 E-value=0.075 Score=33.54 Aligned_cols=44 Identities=41% Similarity=0.567 Sum_probs=34.4
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 22568358840733217699999998718531310122111111
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAG 153 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~G 153 (424)
-+.|.-+||+|-||||||.+.+-||.++.--.....|..=||.|
T Consensus 1170 l~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~g 1213 (4600)
T COG5271 1170 LVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENG 1213 (4600)
T ss_pred HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 52368548996147543578999999999999998876503456
No 246
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.0052 Score=41.67 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=52.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCC-------CEEEHHHHHHHH------HHHCCCCCCCH----HHHHHHHHHHHHH
Q ss_conf 683588407332176999999987185-------313101221111------11035563303----5778876542277
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDV-------PFTMADATTLTE------AGYVGEDVENI----ILKLLQAADYNVE 175 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~-------PF~~vdaT~~TE------~GYvG~Dvesi----i~~L~~~a~~~v~ 175 (424)
+.-.||.| |+||+.+|+.+|+.+.. |--.+..-...+ +-++..+-.+| ||.+.......--
T Consensus 24 ~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C~~i~~~~hpDv~~i~~~~~~I~vd~IR~l~~~~~~~~~ 101 (290)
T PRK07276 24 NHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSCRLIEQGDFSDVTVIEPQGQVIKTDTIRELTANFSQSGY 101 (290)
T ss_pred CEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 50542169--8687999999999981899999898988999999876999871377167775768899999999844561
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 65422333223332002333333443210256898875310587
Q gi|254780271|r 176 RAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGT 219 (424)
Q Consensus 176 ~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~ 219 (424)
...+.|+.+|+.|+... ..+|+|||.+|..
T Consensus 102 ~g~~KV~II~~Ad~mt~--------------~AaNaLLK~LEEP 131 (290)
T PRK07276 102 EGKRQVFIIKDADKMHV--------------NAANSLLKVIEEP 131 (290)
T ss_pred CCCEEEEEECCHHHCCH--------------HHHHHHHHHHCCC
T ss_conf 37827999776565299--------------9999999970389
No 247
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=96.58 E-value=0.0035 Score=42.89 Aligned_cols=229 Identities=26% Similarity=0.395 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----------CCCEEEHHHHH
Q ss_conf 0859999999999986588752121013552256835884073321769999999871-----------85313101221
Q gi|254780271|r 80 IGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII-----------DVPFTMADATT 148 (424)
Q Consensus 80 IGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l-----------~~PF~~vdaT~ 148 (424)
+||+-+=-.|=-- -..|-| .++-+|.-|-||+||=+.||.|-+-. +.||+=+.|-.
T Consensus 322 ~G~s~~Me~VR~~-v~lYAr------------s~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGA 388 (658)
T TIGR02329 322 LGESAAMEQVRAL-VRLYAR------------SAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGA 388 (658)
T ss_pred CCCCCCHHHHHHH-HHHHCC------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCH
T ss_conf 3898213899999-985268------------865067514777228999999759998746665013378846874746
Q ss_pred HHHH-------HHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 1111-------103-55633035778876542277654223332233320023333334432102568988753105870
Q gi|254780271|r 149 LTEA-------GYV-GEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTI 220 (424)
Q Consensus 149 ~TE~-------GYv-G~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~ 220 (424)
++|. ||- |-=-+ .+-.+ -.+-+|-|+.|.+|+|||=..= -| .|-=||++||...
T Consensus 389 i~EsLLEaELFGYeeGAFTG---aRrGG-~~GL~E~Ah~GTLFLDEIGEmP----LP----------LQtRLLRVLeEre 450 (658)
T TIGR02329 389 IAESLLEAELFGYEEGAFTG---ARRGG-RTGLIEAAHRGTLFLDEIGEMP----LP----------LQTRLLRVLEERE 450 (658)
T ss_pred HHHHHHHHHHCCCCCCCCCC---CCCCC-CCCHHHHHCCCCEEEHHHCCCC----CH----------HHHHHHHHHHCCC
T ss_conf 56888877642676665016---77677-6122220057951001003578----61----------4677777651221
Q ss_pred E-ECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 1-025655643222430243100012322000467898876412343332111100000001689996410567775220
Q gi|254780271|r 221 A-SVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 (424)
Q Consensus 221 ~-~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gl 299 (424)
+ .| |. ...+.||..=| | -....|+..+..- .| ..+....=.+|+- -
T Consensus 451 V~Rv----G~----~~P~~VDvRvv---a-Ath~~L~~~v~~G------rF-----R~DLfYRL~~Lri----------~ 497 (658)
T TIGR02329 451 VVRV----GG----TEPVPVDVRVV---A-ATHCALETAVQQG------RF-----RRDLFYRLSILRI----------D 497 (658)
T ss_pred EEEC----CC----CCCCEEEEEEE---E-CCCHHHHHHHHCC------CC-----CHHHHHHHHHHHH----------C
T ss_conf 4761----78----75402444343---3-1222258798578------82-----4228999999851----------4
Q ss_pred HHHHHHCCCCEEEECCCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHH-CCC----CCHHHHH
Q ss_conf 68987207842672111057899998-74267799999999874498999968999999995510-678----7423689
Q gi|254780271|r 300 IPEFIGRLPVLATLEDLDENSLIRIL-SEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIA-HKT----GARGLRS 373 (424)
Q Consensus 300 iPEl~GRlPiiV~L~~Lt~edl~rIL-tepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~-~ni----GAR~Lrt 373 (424)
+|=|..|-.-|..| -.+=+.+=+ .||+ . -..|=+|+.+.+.+|..+-- ..+ --|=||+
T Consensus 498 lPpLR~R~~Di~~L---a~~~l~~~~rrePr--------~-----~l~~P~s~~~~q~L~~~~~~L~~y~WpGNvRELrn 561 (658)
T TIGR02329 498 LPPLRERPDDILPL---AAEYLKQALRREPR--------A-----ALALPLSEAALQELAAVEDALQRYAWPGNVRELRN 561 (658)
T ss_pred CCCCCCCHHHHHHH---HHHHHHHHHCCCCH--------H-----HHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 78766864459999---99999875322515--------7-----65188638999887437889861689984378877
Q ss_pred HHHHHHHHHH-HCCCC
Q ss_conf 9999967774-02767
Q gi|254780271|r 374 ILEKILLDTM-FELPM 388 (424)
Q Consensus 374 IiE~iLedim-Fe~P~ 388 (424)
+||++-...+ -|+-.
T Consensus 562 l~ERl~~~l~dtda~~ 577 (658)
T TIGR02329 562 LVERLALYLSDTDAEP 577 (658)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999988864035563
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.002 Score=44.57 Aligned_cols=38 Identities=32% Similarity=0.546 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHH
Q ss_conf 56835884073321769999999871---853131012211
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTL 149 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~ 149 (424)
.+.|++|.||+|||||.||-.+|.-+ +.+...+.++.|
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el 144 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL 144 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_conf 58828998999987999999999999983984999885999
No 249
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.57 E-value=0.0022 Score=44.32 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=26.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 35884073321769999999871853131
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
||+|+||.|+||+..|+.||+.++.|.+-
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiS 30 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHIN 30 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 79998999998799999999987990687
No 250
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.55 E-value=0.0022 Score=44.20 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=25.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 3588407332176999999987185313
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
||+|+||.|+||+..|+.||+.++.+.+
T Consensus 2 ~iillG~PGsGKgTqa~~la~~~~~~~i 29 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 7999899999879999999998699178
No 251
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.55 E-value=0.0022 Score=44.23 Aligned_cols=32 Identities=38% Similarity=0.638 Sum_probs=23.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHHH
Q ss_conf 5884073321769999999871-85313101221
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII-DVPFTMADATT 148 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT~ 148 (424)
|.++||+|||||.|+++|.+.. +..|+ +-.|+
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~-vs~TT 36 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFS-ISATT 36 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEE-EECCC
T ss_conf 9998999889999999999768994488-70446
No 252
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.49 E-value=0.0012 Score=46.05 Aligned_cols=22 Identities=45% Similarity=0.886 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 8358840733217699999998
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk 135 (424)
+-|+||||||||||-|.+.|--
T Consensus 1 Kr~~f~G~~gCGKTTL~q~L~g 22 (144)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQG 22 (144)
T ss_pred CEEEEEECCCCCHHHHHHHCCC
T ss_conf 9178871588874435431168
No 253
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.47 E-value=0.001 Score=46.63 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=16.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 35884073321769999999871853
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
=||..||||||||=--=|==.+||-|
T Consensus 328 MvLVTGPTGSGKTVSLYTaLniLN~~ 353 (577)
T TIGR02538 328 MVLVTGPTGSGKTVSLYTALNILNTE 353 (577)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 28862665984168787631125776
No 254
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.42 E-value=0.0025 Score=43.92 Aligned_cols=33 Identities=33% Similarity=0.716 Sum_probs=25.4
Q ss_pred CCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHC
Q ss_conf 135522568358-840733217699999998718
Q gi|254780271|r 106 SSNVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 106 ~~~~ei~~~NIL-liGPTGvGKTelAr~LAk~l~ 138 (424)
+.+-.|.+.-++ |+||+|||||.+-|.+|-+..
T Consensus 23 ~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2144544886899989988888999999967778
No 255
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.42 E-value=0.0023 Score=44.17 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 835884073321769999999871853
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
+-|-.+||||||||-|+.+|+.+++-.
T Consensus 388 ~r~Ai~G~SG~GKsTLL~~L~G~l~P~ 414 (566)
T TIGR02868 388 ERVAILGPSGSGKSTLLATLAGLLDPL 414 (566)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 608986688765789999998402899
No 256
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.0028 Score=43.53 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
...|++|.|++|+|||.||-.+|+-|
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~L 140 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANEL 140 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76627997289898899999999999
No 257
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.36 E-value=0.0043 Score=42.24 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf 5683588407332176999999987185313101221
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATT 148 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~ 148 (424)
.+.-|-|||.-|+|||-+.|.||+.++.||+-.|.--
T Consensus 132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~~I 168 (304)
T PRK08154 132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELNREI 168 (304)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH
T ss_conf 7784798899999888999999999598977877999
No 258
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.35 E-value=0.0035 Score=42.86 Aligned_cols=27 Identities=44% Similarity=0.728 Sum_probs=23.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 588407332176999999987185313
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
|+|+||.|+|||..|+.||+.++.+.+
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~i 28 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 899899999879999999999798467
No 259
>PRK02496 adk adenylate kinase; Provisional
Probab=96.35 E-value=0.0035 Score=42.86 Aligned_cols=27 Identities=33% Similarity=0.708 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 835884073321769999999871853
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
++|+|+||.|+||+..|+.||+.++.+
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~ 28 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIP 28 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 189997999999899999999996997
No 260
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.0054 Score=41.56 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5884073321769999999871
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l 137 (424)
|+|+||||||||-.+=-||..+
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l 230 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999897899999999999
No 261
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.32 E-value=0.0022 Score=44.24 Aligned_cols=20 Identities=60% Similarity=0.913 Sum_probs=16.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35884073321769999999871
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l 137 (424)
=||..||||||||- |||-+.
T Consensus 129 LiLVTGPTGSGKST---TlAsmI 148 (350)
T TIGR01420 129 LILVTGPTGSGKST---TLASMI 148 (350)
T ss_pred CEEEECCCCCCHHH---HHHHHH
T ss_conf 38987688986789---999999
No 262
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.29 E-value=0.0083 Score=40.24 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=40.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9997420308599999999999865887521210135522568358840733217699999998718
Q gi|254780271|r 72 LRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 72 ~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+.+-|..++|++++--.+--.++.--+|. +..+.=+||.||.|+||+.|++.|-+.+.
T Consensus 46 y~~F~d~~fG~e~~i~~~V~~~k~AA~g~---------~~~k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGL---------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 50110131164899999999999998446---------71256999988998877999999999999
No 263
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.29 E-value=0.0035 Score=42.86 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
.++|||..|+||+|||.+.+.|...+
T Consensus 143 ~r~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 18968999177775689999999864
No 264
>KOG1969 consensus
Probab=96.28 E-value=0.0037 Score=42.70 Aligned_cols=36 Identities=36% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHCCCEEEHHHH
Q ss_conf 56835-8840733217699999998718531310122
Q gi|254780271|r 112 AKSNI-LLVGPTGCGKTYLAQTLARIIDVPFTMADAT 147 (424)
Q Consensus 112 ~~~NI-LliGPTGvGKTelAr~LAk~l~~PF~~vdaT 147 (424)
.++-| ||-||-|-|||-||.-+|+-.+-.-+-+.|+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINAS 360 (877)
T KOG1969 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINAS 360 (877)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8400687536887872479999998628548873255
No 265
>CHL00179 consensus
Probab=96.25 E-value=0.0046 Score=42.02 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHCC-------------CCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 99999999998658875212-------------10135522-56835884073321769999999871853131012211
Q gi|254780271|r 84 QAKKVLAVAVHNHYKRLAHS-------------SKSSNVEL-AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149 (424)
Q Consensus 84 ~AKkavAvAv~nh~rR~~~~-------------~~~~~~ei-~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~ 149 (424)
-|-|-|=-|-|...--.|.. +-..+--+ ..+-||+|||.|+|..+|.+.||.-..+||+++--.+|
T Consensus 1557 LAErrIFLA~yQtIt~Sq~~~~~n~~~fps~gkPfsL~L~lspSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~ 1636 (2262)
T CHL00179 1557 LAERRIFLAHYQTITYSQTPCGANSSHFPSHGKPFSLRLALPPSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKF 1636 (2262)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHH
T ss_conf 88899999998788606654576766686689873100277876762797877666689998876425375189517776
Q ss_pred --HHHHHCCCC
Q ss_conf --111103556
Q gi|254780271|r 150 --TEAGYVGED 158 (424)
Q Consensus 150 --TE~GYvG~D 158 (424)
-..||...|
T Consensus 1637 L~~~~~~~~~~ 1647 (2262)
T CHL00179 1637 LDDNKGYLIDD 1647 (2262)
T ss_pred HCCCCCCCCCC
T ss_conf 33586544564
No 266
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.18 E-value=0.0041 Score=42.40 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
.++|||..|+||+|||.+++.|...+
T Consensus 148 ~r~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 148 AHRNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 28758998588865689999998632
No 267
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.17 E-value=0.025 Score=36.83 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 878999997420308---59999999999986588752121013552256835884073321769999999871853131
Q gi|254780271|r 67 NPQEILRVLDEYVIG---QGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 67 tP~eI~~~Ld~yVIG---Q~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
+-.++.+.+-+..+- .+-|+ -|--|+|++.... ++ =||+-|.|||||..||--||..|+.|=+.
T Consensus 56 ~~~el~~~v~~~l~~~~~~~~a~------rY~~~r~~r~~~~----pl---iILigGtsGvGKSTlA~~LA~rLgI~~vi 122 (306)
T PRK04220 56 TKEELRRRVYYKLIEKDYEEIAE------KYLLWRRIRKSKE----PI---IILIGGASGVGTSTIAFELASRLGIRSVI 122 (306)
T ss_pred CHHHHHHHHHHHHHHHCCHHHHH------HHHHHHHHHCCCC----CE---EEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 59999999999999844099999------9999999853699----87---99985899887899999999970988342
No 268
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.17 E-value=0.0054 Score=41.53 Aligned_cols=25 Identities=48% Similarity=0.599 Sum_probs=21.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 2568358840733217699999998
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk 135 (424)
+..+-+++-|+||||||+|-+.|++
T Consensus 135 l~~~~~vl~G~TG~GKT~lL~~L~~ 159 (333)
T PRK11784 135 LEEPLVVLGGMTGSGKTRLLQALAN 159 (333)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 5468599867888778999999997
No 269
>CHL00026 ycf2 Ycf2
Probab=96.14 E-value=0.0052 Score=41.65 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=36.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf 568358840733217699999998718531310122111
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLT 150 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~T 150 (424)
.++-||+|||.|+|..+|.+.||.-..+||+++-..+|-
T Consensus 1629 pSkGILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL 1667 (2286)
T CHL00026 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 767527978876666899998774263740896389984
No 270
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.12 E-value=0.0051 Score=41.70 Aligned_cols=26 Identities=42% Similarity=0.706 Sum_probs=21.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCE
Q ss_conf 58840733217699999998718531
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPF 141 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF 141 (424)
|.++||+|||||.|+++|.+.....|
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf 99999998899999999985198776
No 271
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=96.11 E-value=0.0023 Score=44.18 Aligned_cols=36 Identities=42% Similarity=0.614 Sum_probs=28.2
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCE--EEHHHHHHHHHH
Q ss_conf 840733217699999998718531--310122111111
Q gi|254780271|r 118 LVGPTGCGKTYLAQTLARIIDVPF--TMADATTLTEAG 153 (424)
Q Consensus 118 liGPTGvGKTelAr~LAk~l~~PF--~~vdaT~~TE~G 153 (424)
|+||+|||||.+-|.||=+-...+ ++.|-+..|++-
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vP 38 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVP 38 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC
T ss_conf 97888874799999983458777550775671012157
No 272
>PRK06620 hypothetical protein; Validated
Probab=96.11 E-value=0.009 Score=39.97 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 99742030859999999999986588752121013552256835884073321769999999871853131
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
-..|.|+||-.. ..|+++-.+|-- . ....-..+++++.||+|||||.|++..++..++.++.
T Consensus 13 ~~~~dF~vs~~N---~~A~~~i~~wp~-----~-~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~~ 74 (214)
T PRK06620 13 YHPDEFIVSSSN---DQAYNIIKNWQC-----M-FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred CCCCCEEECCCH---HHHHHHHHHCHH-----C-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 886586876869---999999983630-----2-5668655559998799998899999999982858815
No 273
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.10 E-value=0.005 Score=41.75 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=23.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5884073321769999999871853131
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|..=||-|+|||-+|+.||+-|+-+++-
T Consensus 3 I~ISGpPGSGktTvA~~lA~~Lsl~~iS 30 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEC
T ss_conf 8873589686478999999863983120
No 274
>KOG0477 consensus
Probab=96.05 E-value=0.0063 Score=41.05 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEH
Q ss_conf 987899999742030859999999999986588752121013552256835884073321769999999871853-1310
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVP-FTMA 144 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~P-F~~v 144 (424)
+--..|.+-+---|.|.++-|+|||.|+.----+ .+...-.--.-.|+||+|-.|+||.-.-|-.+|...-. |...
T Consensus 438 ~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~k---n~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTG 514 (854)
T KOG0477 438 PIKERIIASIAPSIYGHEDVKRAVALALFGGVPK---NPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTG 514 (854)
T ss_pred CHHHHHHHHHCCHHHCHHHHHHHHHHHHHCCCCC---CCCCCCEECCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 3888999752824314589999999998568756---8898744514402898469982289999999862753168506
Q ss_pred -HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -12211111103556330357788765422776542233322333200
Q gi|254780271|r 145 -DATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 145 -daT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
-||..-=+-||-+|+-+ +.----.+..=.|-+|+-+|||+||..
T Consensus 515 qGASavGLTa~v~KdPvt---rEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477 515 QGASAVGLTAYVRKDPVT---REWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred CCCCCCCEEEEEEECCCC---CEEEECCCEEEECCCCEEEEEHHHHHC
T ss_conf 775433326887517865---303651672897268537741211204
No 275
>CHL00178 consensus
Probab=96.05 E-value=0.0059 Score=41.26 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-------------CCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 9999999999865887521210-------------13552-256835884073321769999999871853131012211
Q gi|254780271|r 84 QAKKVLAVAVHNHYKRLAHSSK-------------SSNVE-LAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL 149 (424)
Q Consensus 84 ~AKkavAvAv~nh~rR~~~~~~-------------~~~~e-i~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~ 149 (424)
-|-|-|=-|-|...--.|..-. ..+-- -..+-||+|||.|+|..+|.+.||.-..|||+++-..+|
T Consensus 1415 LAErrIFLA~yQtIT~Sq~~c~~n~~~~ps~gkPfsLrL~lspSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~ 1494 (2133)
T CHL00178 1415 LAERRIFLAHYQTITYSQTSCGANSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKF 1494 (2133)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHH
T ss_conf 88899999998787603655566655787789860110277766763797877666689998876425375189507887
Q ss_pred H
Q ss_conf 1
Q gi|254780271|r 150 T 150 (424)
Q Consensus 150 T 150 (424)
-
T Consensus 1495 L 1495 (2133)
T CHL00178 1495 L 1495 (2133)
T ss_pred H
T ss_conf 3
No 276
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.02 E-value=0.0076 Score=40.48 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=25.3
Q ss_pred CCCEEEE-ECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6835884-073321769999999871853131
Q gi|254780271|r 113 KSNILLV-GPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 113 ~~NILli-GPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
++.|+-| ||.|+||+-+|+.||+.|+-+|+-
T Consensus 3 ~~iIIaIDGpagSGKST~ak~lA~~L~~~yld 34 (225)
T PRK00023 3 KAPVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 89789965898678789999999993988764
No 277
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=96.02 E-value=0.0029 Score=43.40 Aligned_cols=41 Identities=29% Similarity=0.565 Sum_probs=30.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH----------HCCCEEEHHHHHHHHH----HHCC
Q ss_conf 588407332176999999987----------1853131012211111----1035
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARI----------IDVPFTMADATTLTEA----GYVG 156 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~----------l~~PF~~vdaT~~TE~----GYvG 156 (424)
++|.||+|||||-|--=+.-+ ++.+.--+...+++++ ||+=
T Consensus 34 ViltGPSGSGKTTLLtLiG~LR~~Q~G~L~vlg~~L~ga~~~~l~~~RR~iGyIF 88 (220)
T TIGR02982 34 VILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELKGASKKELVQVRRNIGYIF 88 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHCCCCHHHHHHHHHHCCCEE
T ss_conf 9843788984688999887625655560478220102678889999987639144
No 278
>PRK08727 hypothetical protein; Validated
Probab=96.01 E-value=0.0077 Score=40.47 Aligned_cols=173 Identities=20% Similarity=0.248 Sum_probs=88.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHH
Q ss_conf 9974203085999999999998658875212101355225683-588407332176999999987185---313101221
Q gi|254780271|r 73 RVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSN-ILLVGPTGCGKTYLAQTLARIIDV---PFTMADATT 148 (424)
Q Consensus 73 ~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~ 148 (424)
.-+|.||.|.+.+- + ++...+.. . +.| +.+.||+|+|||.|++.++..... .-.-.++..
T Consensus 16 ~tfdnFi~~~n~~~---a-~l~~~~~~-----~-------~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~ 79 (233)
T PRK08727 16 QRFDSYIAAPDGLL---A-QLQALAAG-----Q-------SSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCHHHCCCCCHHHH---H-HHHHHHCC-----C-------CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 24212067855999---9-99987438-----8-------8898999899999889999999999982799728844788
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 11111035563303577887654227765422333223332002333333443210256898875310587010256556
Q gi|254780271|r 149 LTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGG 228 (424)
Q Consensus 149 ~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~g 228 (424)
+. + ...+.++. -.....|++|-+|.++.... .-+..++..-...+.
T Consensus 80 ~~-----~-----~~~~~l~~------le~~~ll~iDDid~i~g~~~--------~e~aLFhL~N~~~~~---------- 125 (233)
T PRK08727 80 AA-----G-----RLRDALEA------LEGRSLVALDGVDSIAGQRE--------DEVALFDFHNRARAA---------- 125 (233)
T ss_pred HH-----H-----HHHHHHHH------HCCCCEEEEECCHHCCCCHH--------HHHHHHHHHHHHHHC----------
T ss_conf 53-----2-----02567753------10389789855011269827--------999999999999861----------
Q ss_pred CCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC
Q ss_conf 43222430243100012322000467898876412343332111100000001689996410567775220689872078
Q gi|254780271|r 229 RKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP 308 (424)
Q Consensus 229 rk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP 308 (424)
....+.|++.. ..++ . ...|-|.-||-
T Consensus 126 ------~~~ll~ts~~~------------------------------------P~~l-~----------~~l~DL~SRL~ 152 (233)
T PRK08727 126 ------GITLLYTARQM------------------------------------PDGL-A----------LVLPDLRSRLS 152 (233)
T ss_pred ------CCEEEEECCCC------------------------------------HHHH-C----------CCHHHHHHHHH
T ss_conf ------98389977989------------------------------------5662-3----------10021999996
Q ss_pred --CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
Q ss_conf --42672111057899998742677999999998744989999689999999955
Q gi|254780271|r 309 --VLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCA 361 (424)
Q Consensus 309 --iiV~L~~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A 361 (424)
..+.+++++.+.+..||. ..+...| +...++.+++|+..-
T Consensus 153 ~~~~~~l~~~dD~~~~~iL~-----------~~a~~rg--l~l~~~V~~Yll~r~ 194 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLR-----------DRAQRRG--LALDEAAIDWLLTHG 194 (233)
T ss_pred CCCEEEECCCCHHHHHHHHH-----------HHHHHCC--CCCCHHHHHHHHHHC
T ss_conf 69228857889799999999-----------9999869--999989999999856
No 279
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.0053 Score=41.60 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
..+|.|||||.|||||.+-|-||+.+.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 722469965998870779999999863
No 280
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=95.99 E-value=0.0066 Score=40.92 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 83588407332176999999987185313
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
+=|.++||+|+|||.|+++|.+...--|.
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~ 30 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFG 30 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 86999898999999999999984866734
No 281
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.97 E-value=0.012 Score=39.15 Aligned_cols=88 Identities=30% Similarity=0.471 Sum_probs=61.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHHHHH----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 588407332176999999987---185313101221111----1103556330357788765422776542233322333
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARI---IDVPFTMADATTLTE----AGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVD 188 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~~TE----~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEid 188 (424)
.|.-|-||+||-++||.---. -+.||+-+.|..+-| ....|+-+. -+--.+--|.|..|.|++|||-
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLDeIg 303 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLDEIG 303 (511)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCC------CCCCCCHHHHCCCCEEEEEHHH
T ss_conf 6874488861889999874438455897367644779666767777356888------7776346340269748850033
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCEEEC
Q ss_conf 20023333334432102568988753105-870102
Q gi|254780271|r 189 KISRKSDNPSITRDVSGEGVQQALLKIME-GTIASV 223 (424)
Q Consensus 189 Ki~~~~~~~~~~~dvs~~gvq~~LLkile-g~~~~v 223 (424)
..++. .|--||+.+. |+-..|
T Consensus 304 EmSp~--------------lQaKLLRFL~DGtFRRV 325 (511)
T COG3283 304 EMSPR--------------LQAKLLRFLNDGTFRRV 325 (511)
T ss_pred HCCHH--------------HHHHHHHHHCCCCCCCC
T ss_conf 24998--------------99999998627760003
No 282
>KOG1970 consensus
Probab=95.97 E-value=0.0096 Score=39.80 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=30.6
Q ss_pred CCCCEEEE-ECCCCCHHHHHHHHHHHHCCCEEEH-HHHHHHHHHHCCCC
Q ss_conf 56835884-0733217699999998718531310-12211111103556
Q gi|254780271|r 112 AKSNILLV-GPTGCGKTYLAQTLARIIDVPFTMA-DATTLTEAGYVGED 158 (424)
Q Consensus 112 ~~~NILli-GPTGvGKTelAr~LAk~l~~PF~~v-daT~~TE~GYvG~D 158 (424)
.+++|||+ ||+|||||...+-|||.++.-..-- .-+.+-+.+|.+.+
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~ 156 (634)
T KOG1970 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNE 156 (634)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
T ss_conf 6760799857988871319999998648021230477665665554554
No 283
>KOG3347 consensus
Probab=95.96 E-value=0.0072 Score=40.67 Aligned_cols=45 Identities=33% Similarity=0.526 Sum_probs=33.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH--HHCCCC
Q ss_conf 56835884073321769999999871853131012211111--103556
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA--GYVGED 158 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~--GYvG~D 158 (424)
...|||..|..|||||.+|.+||+..+.+++- ++.|-.- =|.|.|
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~--isd~vkEn~l~~gyD 52 (176)
T KOG3347 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIE--ISDLVKENNLYEGYD 52 (176)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCEEE--HHHHHHHHCCHHCCC
T ss_conf 37887986799988025999999973985674--556776611021023
No 284
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.94 E-value=0.0075 Score=40.54 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=78.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEE-HHHHHHH-HHH-HCCCCCCCHHHHHHHHH---HHHHHHHH-----HHHHH
Q ss_conf 35884073321769999999871853131-0122111-111-03556330357788765---42277654-----22333
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTM-ADATTLT-EAG-YVGEDVENIILKLLQAA---DYNVERAQ-----RGIVY 183 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~-vdaT~~T-E~G-YvG~Dvesii~~L~~~a---~~~v~~a~-----~~iv~ 183 (424)
-|.+.||+|||||.|+++|.+.....|.. +-+|+=. -.| --|.|---+-.+-.+.. +.-+|.++ ||+ .
T Consensus 9 livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~E~dG~dY~Fvs~eeF~~~i~~g~FlE~~~~~g~~YGT-~ 87 (208)
T PRK00300 9 LIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPGEVDGVHYHFVSREEFEEMIENGEFLEWAEVFGNYYGT-P 87 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEECCCCEEC-C
T ss_conf 899999998899999999997299868998974688989987789657996199999998628366789983870352-4
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 22333200233333344321025689887531058701025655643222430243100012322000467898876412
Q gi|254780271|r 184 IDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARG 263 (424)
Q Consensus 184 iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~~~~ 263 (424)
.++++.+.......- -++.-.|+++..-.. + +. -..||.-..++.|.+-+..|.
T Consensus 88 ~~~I~~~~~~G~~vi--ldidvqGa~~lk~~~----------------~--~~------~~IFI~Pps~e~L~~RL~~Rg 141 (208)
T PRK00300 88 REPVEEALAAGKDVL--LEIDWQGAQQVKKKM----------------P--DA------VSIFILPPSLEELERRLRGRG 141 (208)
T ss_pred HHHHHHHHHCCCCEE--EECCHHHHHHHHHHC----------------C--CC------EEEEEECCCHHHHHHHHHHCC
T ss_conf 699999985699879--746789999999859----------------7--75------799982889999999998638
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3433321111000000016899964105677752206898720784267211105--7899998742677999999998
Q gi|254780271|r 264 EKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDE--NSLIRILSEPKNALIKQYQCLF 340 (424)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPiiV~L~~Lt~--edl~rILtepknsLikQy~~Ll 340 (424)
.. . .... ..-+..... . =++.+-|+-++.=+.|++ +++..|+..-+.-...|.+.+.
T Consensus 142 ~e----s----~~~I----~~Rl~~A~~-E-------l~~~~~fD~vIiNddl~~a~~~l~~ii~~e~~~~~~q~~~~~ 200 (208)
T PRK00300 142 TD----S----EEVI----ARRLEAAKE-E-------IAHASEYDYVIVNDDLETALEELKAIIRAERLRRDRQKQRHA 200 (208)
T ss_pred CC----C----HHHH----HHHHHHHHH-H-------HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99----8----8899----999999999-9-------988855999998999999999999999998602687999999
No 285
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.93 E-value=0.024 Score=37.03 Aligned_cols=115 Identities=28% Similarity=0.383 Sum_probs=76.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH-----HHCCCCCCCHHHH---HHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 5884073321769999999871853131012211111-----1035563303577---887654227765422-333223
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEA-----GYVGEDVENIILK---LLQAADYNVERAQRG-IVYIDE 186 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~-----GYvG~Dvesii~~---L~~~a~~~v~~a~~~-iv~iDE 186 (424)
+|+-|||-+|||-+-.-||+..+--|++..--.-|+. -||-.|-+++-++ |+++. .+| -|.+||
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAl-------R~GyWIVLDE 963 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEAL-------RRGYWIVLDE 963 (4600)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCEEECCCCCEEEEHHHHHHHH-------HCCCEEEEEC
T ss_conf 798668887700499999987376079865855434998743035068985654010789988-------5686799610
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CEEECCCCCCCCCCCCCEEEEECCHHHHHHHCC
Q ss_conf 33200233333344321025689887531058-701025655643222430243100012322000
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEG-TIASVPPQGGRKHPQQEFLQVDTTNILFICGGA 251 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg-~~~~v~~~~grk~~~~~~~~Idt~nilfi~~ga 251 (424)
.--+.. .|..+|-+++++ ...-+|....--+|+.++..+-|.|---+-||.
T Consensus 964 LNLApT--------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR 1015 (4600)
T COG5271 964 LNLAPT--------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR 1015 (4600)
T ss_pred CCCCCH--------------HHHHHHHHHHCCCCCEECCCCCEEECCCCCEEEEEECCCCCCCCCH
T ss_conf 246707--------------7999999864466402067755243358873688613898653412
No 286
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=95.92 E-value=0.0078 Score=40.41 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=54.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 835884073321769999999871853131012211111103556-------33035778876542277654-2233322
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGED-------VENIILKLLQAADYNVERAQ-RGIVYID 185 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~D-------vesii~~L~~~a~~~v~~a~-~~iv~iD 185 (424)
|-+=.+||--+|||-|+++||+.+++||+---|-.|-|..-.|+| -..|++.-...-...|+.+. .+|+++|
T Consensus 176 k~V~ilG~eStGKstLv~~lA~~~nt~~~~Eyar~y~e~~~ggDe~~L~~~dY~~~~~G~~~~~~~~v~~a~nq~v~f~D 255 (346)
T TIGR01526 176 KTVAILGGESTGKSTLVNKLAEKLNTTSAWEYAREYVEAKLGGDEIALQYSDYARIVLGQIDYIDAAVRDADNQKVAFID 255 (346)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 58888558886368999999998468871256556666516872145420343787642466777863073237478984
No 287
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=95.91 E-value=0.004 Score=42.44 Aligned_cols=190 Identities=25% Similarity=0.448 Sum_probs=113.9
Q ss_pred CCCCCCE--EEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2256835--884073321769999999871---8531310122111----111035563303577887654227765422
Q gi|254780271|r 110 ELAKSNI--LLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT----EAGYVGEDVENIILKLLQAADYNVERAQRG 180 (424)
Q Consensus 110 ei~~~NI--LliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T----E~GYvG~Dvesii~~L~~~a~~~v~~a~~~ 180 (424)
.|.|||| |++|=+|+||=-+||.|=++. +-|||=+.|..-= |+-.-|..=+- -.--+..-.+.+|.|+.|
T Consensus 160 kvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGA-FTGA~k~T~GKIE~A~~G 238 (451)
T TIGR02915 160 KVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGA-FTGAVKQTLGKIEYAHGG 238 (451)
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHH-HHHHHCCCCCCEEEECCC
T ss_conf 2120000130104667117899989842057897773444167457524667760341012-422003477616750688
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHHH
Q ss_conf 33322333200233333344321025689887531058701025655643222430243100012322000467898876
Q gi|254780271|r 181 IVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIIS 260 (424)
Q Consensus 181 iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~~ 260 (424)
..|+|||=.+=. ..|=-||+-|-..+.. --|||+ .|.||..=| |.. ...|...+.
T Consensus 239 TLFLDEIGDLP~--------------~LQAKLLRFLQErVIE--R~GGR~-----eIPVDVRvv---CAT-nqdL~~~i~ 293 (451)
T TIGR02915 239 TLFLDEIGDLPL--------------NLQAKLLRFLQERVIE--RLGGRE-----EIPVDVRVV---CAT-NQDLKKMIA 293 (451)
T ss_pred CCCCCCHHCCCH--------------HHHHHHHHHHHHHHHH--CCCCCC-----CCCCCEEEE---ECC-CHHHHHHHH
T ss_conf 301111220676--------------6899999875466631--058872-----456142675---032-246899985
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CEEEECCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 412343332111100000001689996410567775220689872078-4267211105--7899998742677999999
Q gi|254780271|r 261 ARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLP-VLATLEDLDE--NSLIRILSEPKNALIKQYQ 337 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlP-iiV~L~~Lt~--edl~rILtepknsLikQy~ 337 (424)
.. .|. +|| -=|+- |.|.+-||-. +|-+ +| -|.+++||.
T Consensus 294 eg------~FR--------------------EDL---------fYRl~Eisi~iPPLR~R~gDa~-lL---A~~Fl~rf~ 334 (451)
T TIGR02915 294 EG------TFR--------------------EDL---------FYRLAEISITIPPLRDRDGDAV-LL---ANAFLERFA 334 (451)
T ss_pred CC------CCC--------------------CCC---------EEEEEEEEEECCCCCCCHHHHH-HH---HHHHHHHHH
T ss_conf 48------972--------------------000---------1346667862588998601899-99---999999887
Q ss_pred HHHHHCCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf 99874498999968999999995510678
Q gi|254780271|r 338 CLFDMEDVELVFHEDALREIARCAIAHKT 366 (424)
Q Consensus 338 ~Ll~~egV~L~FtdeAi~~IA~~A~~~ni 366 (424)
.-.+ --...||+||++.|-...|==|+
T Consensus 335 ~~~k--~~~~~F~~DA~~ale~h~WPGNv 361 (451)
T TIGR02915 335 RELK--RKAKGFTDDALRALEAHKWPGNV 361 (451)
T ss_pred HHHC--CCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 8733--02166069999997606998841
No 288
>PRK04182 cytidylate kinase; Provisional
Probab=95.91 E-value=0.0077 Score=40.44 Aligned_cols=28 Identities=36% Similarity=0.592 Sum_probs=25.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5884073321769999999871853131
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|-.-||.|+|||+||+.||+.|+.||.=
T Consensus 3 ItI~g~~GSGk~tIak~LA~~lg~~~~d 30 (178)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKLVS 30 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 9995899888799999999995993872
No 289
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.82 E-value=0.0062 Score=41.09 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=24.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5884073321769999999871853131
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|=.=||+|+|||-+|+.||+.++.+|+-
T Consensus 2 IaIdGpagsGKsT~ak~lA~~l~~~~ld 29 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLD 29 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 8886899789899999999990990776
No 290
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.0065 Score=40.98 Aligned_cols=29 Identities=31% Similarity=0.778 Sum_probs=22.6
Q ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 2256-8358840733217699999998718
Q gi|254780271|r 110 ELAK-SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~-~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+ .-+-++||||||||.+-|.+|=+..
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 974797999989998888999999968877
No 291
>PRK10867 signal recognition particle protein; Provisional
Probab=95.77 E-value=0.042 Score=35.27 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHHHHHHCCC-CCCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9987899999742030859999-----999999986588752121-013552-256835884073321769999999871
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAK-----KVLAVAVHNHYKRLAHSS-KSSNVE-LAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AK-----kavAvAv~nh~rR~~~~~-~~~~~e-i~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
+..-+++.+.+-+..+||+-.+ ..+--.||.....+--.. ...+.. -.|.-|||+|.-|+|||..+=-||.++
T Consensus 45 ~~vvk~~i~~vke~~~g~~v~~~l~p~q~i~kiv~~eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~l 124 (453)
T PRK10867 45 LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (453)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79999999999999633513578988999999999999998588876663378999699997468885185899999999
Q ss_pred C----CCEEEHHHHHHHHH------------------HHCCCCCCCHHHHHHHHH
Q ss_conf 8----53131012211111------------------103556330357788765
Q gi|254780271|r 138 D----VPFTMADATTLTEA------------------GYVGEDVENIILKLLQAA 170 (424)
Q Consensus 138 ~----~PF~~vdaT~~TE~------------------GYvG~Dvesii~~L~~~a 170 (424)
. -+-..|-|-.|-.+ ++.|.|+-.+.++-++.+
T Consensus 125 k~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~~a 179 (453)
T PRK10867 125 REKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (453)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf 9738983798558877058999999999851980436788998899999999999
No 292
>PRK07667 uridine kinase; Provisional
Probab=95.74 E-value=0.012 Score=39.16 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=25.1
Q ss_pred CCCCEEEE---ECCCCCHHHHHHHHHHHH---CCCEEEH
Q ss_conf 56835884---073321769999999871---8531310
Q gi|254780271|r 112 AKSNILLV---GPTGCGKTYLAQTLARII---DVPFTMA 144 (424)
Q Consensus 112 ~~~NILli---GPTGvGKTelAr~LAk~l---~~PF~~v 144 (424)
.|.|-++| |+||+|||.+|+.|++.+ ++|++.+
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~ 48 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIF 48 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 759869999779897889999999999986659837999
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.023 Score=37.10 Aligned_cols=21 Identities=57% Similarity=0.743 Sum_probs=14.7
Q ss_pred CEEEEECCCCCHHHH-HHHHHH
Q ss_conf 358840733217699-999998
Q gi|254780271|r 115 NILLVGPTGCGKTYL-AQTLAR 135 (424)
Q Consensus 115 NILliGPTGvGKTel-Ar~LAk 135 (424)
=+-|+||||||||.. ||--|+
T Consensus 350 v~AlvGpTGvGKTTT~aKlAa~ 371 (557)
T PRK12727 350 VIALVGPTGAGKTTTIAKLAQR 371 (557)
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 4787437776731179999999
No 294
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=95.72 E-value=0.015 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.744 Sum_probs=21.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|++.||-|||||.|.+.+++.|.
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~ 24 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLK 24 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 989978999889999999999998
No 295
>KOG0479 consensus
Probab=95.67 E-value=0.016 Score=38.17 Aligned_cols=117 Identities=29% Similarity=0.393 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 2699878999997----420308599999999999865887521210135522568358840733217699999998718
Q gi|254780271|r 63 EGIPNPQEILRVL----DEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 63 ~~~~tP~eI~~~L----d~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
++|.+-+.|.+.| .--|.|.+.-|||+.--+---.-+.-......+-.| ||||||-.-|-|.-|-|-.-..
T Consensus 283 ~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDI---NiLlvGDPSvAKSQLLRyVLnt-- 357 (818)
T KOG0479 283 KKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDI---NILLVGDPSVAKSQLLRYVLNT-- 357 (818)
T ss_pred HHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEECCCE---EEEEECCCHHHHHHHHHHHHHC--
T ss_conf 98773178899986503762035799999999998545012057886222520---3898469527899999999841--
Q ss_pred CCEEEHHHHHHHHHHH--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5313101221111110--------3556330357788765422776542233322333200
Q gi|254780271|r 139 VPFTMADATTLTEAGY--------VGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKIS 191 (424)
Q Consensus 139 ~PF~~vdaT~~TE~GY--------vG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~ 191 (424)
+|.++. | |..|- |--|.|+==++|- + .-+| .|-+|+|+|||+||.+
T Consensus 358 AplAI~--T--TGRGSSGVGLTAAVTtD~eTGERRLE-A-GAMV-LADRGVVCIDEFDKMs 411 (818)
T KOG0479 358 APLAIA--T--TGRGSSGVGLTAAVTTDQETGERRLE-A-GAMV-LADRGVVCIDEFDKMS 411 (818)
T ss_pred CCCCCC--C--CCCCCCCCCCEEEEEECCCCCHHHHH-C-CCEE-ECCCCEEEEHHCCCCC
T ss_conf 540010--3--68887775514677415553134342-3-8368-7058558731002224
No 296
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.65 E-value=0.0098 Score=39.71 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=31.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 358840733217699999998718531310122111111035563303577887
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQ 168 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~ 168 (424)
=||+.||||+|||-..-++-..++.|..++ . -|-++||..+-...|
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~nI----~----TiEDPVE~~~~gI~Q 305 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERNI----I----TIEDPVEYQLPGINQ 305 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEE----E----EEECCEEEECCCCCE
T ss_conf 899968999988999999999862788508----9----840780451598515
No 297
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.63 E-value=0.027 Score=36.62 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=20.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEE---EECHHHHHHHHHHH
Q ss_conf 67211105789999874267799999999874---49899---99689999999955
Q gi|254780271|r 311 ATLEDLDENSLIRILSEPKNALIKQYQCLFDM---EDVEL---VFHEDALREIARCA 361 (424)
Q Consensus 311 V~L~~Lt~edl~rILtepknsLikQy~~Ll~~---egV~L---~FtdeAi~~IA~~A 361 (424)
+.+..++.+++++-. +++-|-..||.. ||+.+ ..||+.+.+.++.|
T Consensus 411 ~di~~i~~~~lr~~i-----~~V~Q~~~LF~~TI~eNI~~g~~~atdeei~~A~~~a 462 (588)
T PRK11174 411 IELRELDPESWRKHL-----SWVGQNPQLFHGTLRDNVLLANPDASDEQLQQALENA 462 (588)
T ss_pred EECCCCCHHHHHHHE-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 860308999999660-----3516667777662998653358543345799999986
No 298
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.61 E-value=0.012 Score=39.02 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6835884073321769999999871853131
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
++=|+++||+|+||+.|.+.|.+....+|..
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~ 32 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFER 32 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 9779999999999999999998639645057
No 299
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=95.59 E-value=0.011 Score=39.42 Aligned_cols=24 Identities=38% Similarity=0.908 Sum_probs=21.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 588407332176999999987185
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
.||-||+|||||-..+.||+-++.
T Consensus 48 LlLtGPaG~GKTTTI~lLAkeLG~ 71 (490)
T pfam03215 48 LLLTGPSGCGKSTTVKVLSKELGI 71 (490)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998798998899999999997596
No 300
>PRK13695 putative NTPase; Provisional
Probab=95.57 E-value=0.021 Score=37.48 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 683588407332176999999987185
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-.|++.||-|||||.|.+.+.+.|..
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~ 29 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAR 29 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 429998789998899999999999863
No 301
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.50 E-value=0.014 Score=38.57 Aligned_cols=40 Identities=30% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHHHHHH
Q ss_conf 56835884073321769999999871-85313101221111
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII-DVPFTMADATTLTE 151 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT~~TE 151 (424)
.|+=|+|.|+.|+|||.+++.+..-+ ...++.+|+-.|-+
T Consensus 11 ~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~ 51 (191)
T pfam06414 11 RPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRT 51 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHH
T ss_conf 98799995799888899999998753789938971358788
No 302
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.50 E-value=0.0099 Score=39.68 Aligned_cols=26 Identities=46% Similarity=0.746 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 83588407332176999999987185
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-+-++||||+|||-|++-|+++.+.
T Consensus 368 e~vaiVG~SGsGKSTL~~LL~r~ydp 393 (575)
T PRK11160 368 EKVALLGRTGCGKSTLLQLLTRAWDP 393 (575)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 88999889997599999998623678
No 303
>PRK10416 cell division protein FtsY; Provisional
Probab=95.50 E-value=0.097 Score=32.76 Aligned_cols=60 Identities=33% Similarity=0.439 Sum_probs=41.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC---CCEEEHHHHHHHHH------------------HHCCCCCCCHHHHHHHHH
Q ss_conf 568358840733217699999998718---53131012211111------------------103556330357788765
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID---VPFTMADATTLTEA------------------GYVGEDVENIILKLLQAA 170 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~---~PF~~vdaT~~TE~------------------GYvG~Dvesii~~L~~~a 170 (424)
.|.=|||+|--|+|||-.+=-||+++. -.-+.+-|-+|--+ +.-|.|+-+++++-++.+
T Consensus 294 ~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g~Dpa~V~~dai~~a 373 (499)
T PRK10416 294 TPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 373 (499)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98799997478787898999999999977995378840667568999999984245736983689999799999999999
Q ss_pred H
Q ss_conf 4
Q gi|254780271|r 171 D 171 (424)
Q Consensus 171 ~ 171 (424)
.
T Consensus 374 ~ 374 (499)
T PRK10416 374 K 374 (499)
T ss_pred H
T ss_conf 9
No 304
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=95.47 E-value=0.012 Score=39.05 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5884073321769999999871853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
|...||||+|||.+|+.|++.++..
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~ 26 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGRE 26 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 8998998571999999999996605
No 305
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.40 E-value=0.023 Score=37.19 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=27.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH
Q ss_conf 35884073321769999999871---8531310122111
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT 150 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T 150 (424)
=|.|+|.+|+|||.||+.|.+.| +.+.+..|.-.+-
T Consensus 9 viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR 47 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999789999989999999999999759977998868999
No 306
>PRK13542 consensus
Probab=95.39 E-value=0.043 Score=35.22 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHC
Q ss_conf 0135522568358-840733217699999998718
Q gi|254780271|r 105 KSSNVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 105 ~~~~~ei~~~NIL-liGPTGvGKTelAr~LAk~l~ 138 (424)
+..+-+|.|.-++ ++||.|+|||.|.|.|+-++.
T Consensus 35 ~~isl~i~~Gei~~liGpNGaGKTTLlk~l~Gll~ 69 (224)
T PRK13542 35 RGIDISLAPGDLLQVMGPNGSGKTSLLRVLSGLMP 69 (224)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 46167875997999999999999999999957978
No 307
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=95.35 E-value=0.019 Score=37.74 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCCCCCEEEEECCCCCHHHHHHH-HHHHH--CCCEEEHHHH
Q ss_conf 22568358840733217699999-99871--8531310122
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQT-LARII--DVPFTMADAT 147 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~-LAk~l--~~PF~~vdaT 147 (424)
.-.+.|+|++||||+|||..... +...+ +-+.+..|..
T Consensus 12 ~~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~~s~iv~DpK 52 (386)
T pfam10412 12 RSETQHILIVGTTGTGKTQALRELLDQIRARGDRAIIYDPT 52 (386)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 87767589988999988879999999999779919999587
No 308
>KOG3354 consensus
Probab=95.35 E-value=0.015 Score=38.50 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 5683588407332176999999987185313101
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
.|--|+.+|++|+||+.+++.|++-+.-+|+-.|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 7605999835887744599999998588624555
No 309
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.34 E-value=0.014 Score=38.59 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=20.3
Q ss_pred CCCCCCCCC-EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 355225683-5884073321769999999871
Q gi|254780271|r 107 SNVELAKSN-ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 107 ~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l 137 (424)
.+..+.|.+ +|+.||+|||||-+-|+||-+-
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 52654799879987899987889999996458
No 310
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.014 Score=38.62 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5884073321769999999871853131
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|-.-||.|||||.+|+.||+.++-||+-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9961799997027999999982971562
No 311
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.012 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.699 Sum_probs=23.0
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5225683-58840733217699999998718
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+.- +-++||+|||||-+.|.+|-+..
T Consensus 27 l~i~~Ge~~~llGpSG~GKTTlLr~iaGl~~ 57 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4988998999999996499999999976999
No 312
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=95.23 E-value=0.035 Score=35.83 Aligned_cols=54 Identities=39% Similarity=0.658 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 6998789999974203085999999999998658875212101355225683588407332176999999987185
Q gi|254780271|r 64 GIPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 64 ~~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
..|.|+-| ..||||++|.+++.-|.. .+.|++++|..|+||..+++.++.++..
T Consensus 11 ~~p~p~l~-----d~~~g~~~~~~~~~~~~~-----------------~~~~~~l~g~pg~g~~~~~~~~~~~l~~ 64 (662)
T TIGR00764 11 PVPEPRLI-----DQVIGQEEAVEVIKKAAK-----------------QKRNVLLLGEPGVGKSMLAKAVAELLPD 64 (662)
T ss_pred CCCCHHHH-----HHHHCCHHHHHHHHHHHH-----------------HCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 56641456-----666140468899998754-----------------1033578617775457888888874133
No 313
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.21 E-value=0.017 Score=38.03 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5884073321769999999871853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
||+.||||+|||.....|...++.+
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~ 28 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9998999997999999999853637
No 314
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.20 E-value=0.01 Score=39.67 Aligned_cols=31 Identities=32% Similarity=0.727 Sum_probs=23.5
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 5225683-588407332176999999987185
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+|.+.- +-++||||||||-|.|.+|-+...
T Consensus 26 l~i~~GE~~~llGpSG~GKTTlLr~iaGL~~p 57 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 19999989999999974599999999777677
No 315
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.17 E-value=0.03 Score=36.31 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=39.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHH-----HHHCCCCCCCHHHHHHHHHH
Q ss_conf 6835884073321769999999871---85313101221111-----11035563303577887654
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTE-----AGYVGEDVENIILKLLQAAD 171 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE-----~GYvG~Dvesii~~L~~~a~ 171 (424)
+.=|.|+|.+|+|||.||+.|.+.| +.|.+..|.-.+-+ .||-=+|..-.++++...|.
T Consensus 24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~l~~dlgfs~~dR~~n~~r~~~lak 90 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAK 90 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8699987999998899999999999975997599777999874366789899999999999999999
No 316
>PRK03839 putative kinase; Provisional
Probab=95.14 E-value=0.023 Score=37.17 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 358840733217699999998718531310
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
.|+..|..|||||-+|+.||+.++..++-+
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg~~~i~v 31 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLGYEYVNL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEEH
T ss_conf 899978999998999999999769879879
No 317
>KOG0060 consensus
Probab=95.13 E-value=0.014 Score=38.53 Aligned_cols=26 Identities=42% Similarity=0.853 Sum_probs=20.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 56835884073321769999999871
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
..+|.|..||||||||-|-|.||.+-
T Consensus 460 ~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060 460 SGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89759997899876368999985325
No 318
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.011 Score=39.27 Aligned_cols=30 Identities=40% Similarity=0.795 Sum_probs=23.1
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 225683-588407332176999999987185
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+|.+.- +-++||+|||||-+.|.||.+++.
T Consensus 23 ~i~~Ge~~~ilGpSG~GKSTllr~i~gl~~p 53 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8869989999999995699999999759999
No 319
>PTZ00301 uridine kinase; Provisional
Probab=95.12 E-value=0.02 Score=37.55 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=20.2
Q ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 6835-8840733217699999998718
Q gi|254780271|r 113 KSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 113 ~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
|..| -..||||+|||.+|+.|++.+.
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~ 28 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 988999968876789999999999987
No 320
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.024 Score=37.04 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5884073321769999999871853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
|..-|++|+|||-+||.|+..++.+
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9986798778899999999982867
No 321
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.11 E-value=0.015 Score=38.53 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=30.0
Q ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHH---HHH-----H-HHHHHCCCCC
Q ss_conf 2256-835884073321769999999871853--13101---221-----1-1111035563
Q gi|254780271|r 110 ELAK-SNILLVGPTGCGKTYLAQTLARIIDVP--FTMAD---ATT-----L-TEAGYVGEDV 159 (424)
Q Consensus 110 ei~~-~NILliGPTGvGKTelAr~LAk~l~~P--F~~vd---aT~-----~-TE~GYvG~Dv 159 (424)
+|.| +-+-++||||+|||-|++-|+++++.. -+.+| -+. + ...|||..|+
T Consensus 364 ~I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg~di~~~~~~~lr~~i~~V~Q~~ 425 (581)
T PRK11176 364 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 425 (581)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCCHHHHHCCCCCCCCCC
T ss_conf 57999443122899986789999998536678874878988512147666503455607776
No 322
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.013 Score=38.79 Aligned_cols=29 Identities=24% Similarity=0.644 Sum_probs=22.4
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+.- +-++||||||||-|.|.+|-+..
T Consensus 46 ~i~~GE~~~ivG~SGsGKSTLLr~i~GL~~ 75 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 888999999998998489999999975999
No 323
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.10 E-value=0.0079 Score=40.37 Aligned_cols=49 Identities=43% Similarity=0.605 Sum_probs=29.2
Q ss_pred CCCCEEEE-ECCCCCHHH-HHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 56835884-073321769-99999987185313101221111110355633035778876
Q gi|254780271|r 112 AKSNILLV-GPTGCGKTY-LAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQA 169 (424)
Q Consensus 112 ~~~NILli-GPTGvGKTe-lAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~ 169 (424)
.|+=|+|+ ||||||||- |==.|+++ |.| +-.=+| |=++||+-|.--.|.
T Consensus 243 rpHGIiLVTGPTGSGKtTTLYaaL~~L-N~~----~~NIlT----vEDPVEY~i~GIgQ~ 293 (495)
T TIGR02533 243 RPHGIILVTGPTGSGKTTTLYAALSRL-NTP----ERNILT----VEDPVEYQIEGIGQI 293 (495)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHH-CCC----CCCEEE----EECCEEEEECCCCEE
T ss_conf 889618841778985258899999863-589----971568----657824762487636
No 324
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.08 E-value=0.039 Score=35.52 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l 137 (424)
.+|.++..|||+|||.++-.+++.+
T Consensus 18 ~~~~~i~~pTGsGKT~~~~~~i~~~ 42 (103)
T pfam04851 18 KKRGLIVMATGSGKTLTAAKLIARL 42 (103)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 3986999589998799999999999
No 325
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=95.08 E-value=0.016 Score=38.18 Aligned_cols=22 Identities=59% Similarity=1.016 Sum_probs=19.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5884073321769999999871
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l 137 (424)
|.+-||+|+|||.+|+.||+.+
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~ 22 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARAL 22 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 9897999898899999999999
No 326
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.06 E-value=0.088 Score=33.04 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 859999999999986588752121013552256835884073321769999999871853131
Q gi|254780271|r 81 GQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 81 GQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|-+-|+| |--||+++.... |=-||+=|.|||||..||--||--|+.+-++
T Consensus 243 ~~~~A~r------Y~lwR~ir~~~~-------PiiILIGGaSGvGKSTlAseLA~RLGI~~VI 292 (492)
T PRK12337 243 GPDVSAR------YRLLRVLRKPPR-------PLHVLLGGVSGTGKSVLAAELAYRLGITRVV 292 (492)
T ss_pred CHHHHHH------HHHHHHHHCCCC-------CEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 3889999------999999735688-------7699960788866888999999960988102
No 327
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.05 E-value=0.013 Score=38.85 Aligned_cols=30 Identities=37% Similarity=0.710 Sum_probs=22.8
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 225683-588407332176999999987185
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+|.+.- +-++||+|||||-+.|.+|-+...
T Consensus 26 ~v~~Ge~~~llGpSG~GKtTlLr~iaGl~~p 56 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999999953599999999769999
No 328
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=95.03 E-value=0.025 Score=36.89 Aligned_cols=107 Identities=25% Similarity=0.439 Sum_probs=68.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3588407332176999999987---185313101221----111110355633035778876542277654223332233
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARI---IDVPFTMADATT----LTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEV 187 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT~----~TE~GYvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEi 187 (424)
++|.-|=||+||=+.|+.|=+. .+.||+=+.+.. +.|.-.-|..-+-- .--.....+-=|+|.-|.+|+|||
T Consensus 160 ~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~ESELFGHEkGAF-TGA~~~~~GRFEQA~GGTLFLDEI 238 (471)
T TIGR01818 160 SVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIESELFGHEKGAF-TGANTRRQGRFEQADGGTLFLDEI 238 (471)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHHHHHCCCCCCCC-CCCCCCCCCCEEECCCCCEECCCC
T ss_conf 5888557577589999984013755577732730232224665543214565300-010255677725348882101021
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCEEEE
Q ss_conf 320023333334432102568988753105-8701025655643222430243
Q gi|254780271|r 188 DKISRKSDNPSITRDVSGEGVQQALLKIME-GTIASVPPQGGRKHPQQEFLQV 239 (424)
Q Consensus 188 dKi~~~~~~~~~~~dvs~~gvq~~LLkile-g~~~~v~~~~grk~~~~~~~~I 239 (424)
=..=. .+|--||++|. |...+| ||+..-..+-.+|
T Consensus 239 GDMPl--------------~~QTRLLRVL~~G~f~rV---GG~~p~k~DVRi~ 274 (471)
T TIGR01818 239 GDMPL--------------DLQTRLLRVLADGEFYRV---GGRTPIKVDVRIV 274 (471)
T ss_pred CCCCH--------------HHHHHHHHHHCCCCEEEE---CCCEEEEEEEEEE
T ss_conf 67877--------------687779886407865772---6820245504667
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.00 E-value=0.019 Score=37.71 Aligned_cols=25 Identities=44% Similarity=0.817 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 8358840733217699999998718
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+.+-++||||||||-|++-|.++++
T Consensus 362 e~vaiVG~SGsGKSTL~~LL~gly~ 386 (585)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLHRVFD 386 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8899988989869999999860157
No 330
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.00 E-value=0.016 Score=38.24 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.4
Q ss_pred EECCCCCHHHHHHHHHHHHCCCEEEHH
Q ss_conf 407332176999999987185313101
Q gi|254780271|r 119 VGPTGCGKTYLAQTLARIIDVPFTMAD 145 (424)
Q Consensus 119 iGPTGvGKTelAr~LAk~l~~PF~~vd 145 (424)
.|.+|||||.+++.||+.++++|+-.|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGD 27 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGD 27 (161)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEECCC
T ss_conf 987765777999999998098233356
No 331
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=94.99 E-value=0.016 Score=38.28 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=28.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCC
Q ss_conf 58840733217699999998718531310122111111035
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVG 156 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG 156 (424)
|=..||+|+|||.+|+.|++.++.-.....+.-+..=||+=
T Consensus 37 IgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~ 77 (230)
T PRK09270 37 VGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHL 77 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 99989998899999999999986237998579973653345
No 332
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.99 E-value=0.015 Score=38.36 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+.- +-++||||||||-+.|.|+.+..
T Consensus 46 ~I~~GEi~~lvGpSGsGKSTLLr~i~GL~~ 75 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 887998999999997349999999975999
No 333
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.016 Score=38.29 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+-++||+|||||-|.|.+|-+..
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999779999999976999
No 334
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.015 Score=38.34 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=20.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+-++||||||||-|.|.|+.+..
T Consensus 57 ~~ivG~SGsGKSTLlr~i~gL~~ 79 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999998469999999975999
No 335
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.95 E-value=0.022 Score=37.21 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=7.8
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 884073321769999999871
Q gi|254780271|r 117 LLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 117 LliGPTGvGKTelAr~LAk~l 137 (424)
-++||||+|||-|++-|.+++
T Consensus 371 aIVG~SGsGKSTL~~LL~rly 391 (593)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYY 391 (593)
T ss_pred EEECCCCCCHHHHHHHHHHHC
T ss_conf 987999886899999999855
No 336
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.94 E-value=0.013 Score=38.79 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCC-----CEEEHHHHHH---------HHHHHCCCCCCCHH
Q ss_conf 22568-3588407332176999999987185-----3131012211---------11110355633035
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDV-----PFTMADATTL---------TEAGYVGEDVENII 163 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~-----PF~~vdaT~~---------TE~GYvG~Dvesii 163 (424)
+|.+. -+-++||+|||||-|+|.|+-++.- =.+.++-..+ ..+|||-.++++.+
T Consensus 30 ~I~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~P~~q~ 98 (283)
T PRK13640 30 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 98 (283)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHHHCEEEEEECCCCCC
T ss_conf 998999999999999879999999964037888861799999999996798899626189986887618
No 337
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.92 E-value=0.022 Score=37.31 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 83588407332176999999987185
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-+-++||||+|||-|++-|.++++.
T Consensus 342 e~vaIVG~SGsGKSTLl~LL~g~y~p 367 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 78998799999879999999977642
No 338
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.88 E-value=0.017 Score=38.03 Aligned_cols=43 Identities=33% Similarity=0.604 Sum_probs=30.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC-CEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 588407332176999999987185-31310122111111035563303
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV-PFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~-PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
--+|||+||||+.+-|+|-++-+. |-++++- |+-|-|.|+-+.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G----~v~~~g~ni~~~ 79 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEG----EVLLDGKNIYDP 79 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE----EEEECCEECCCC
T ss_conf 99888988678889999875411566656878----998888243577
No 339
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.88 E-value=0.018 Score=37.85 Aligned_cols=30 Identities=37% Similarity=0.750 Sum_probs=23.1
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5225683-58840733217699999998718
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+.- +.++||+|||||.|.+.|+.++.
T Consensus 28 ~~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9985996999999999999999999964668
No 340
>pfam01202 SKI Shikimate kinase.
Probab=94.88 E-value=0.038 Score=35.60 Aligned_cols=40 Identities=30% Similarity=0.528 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 3217699999998718531310122111111035563303577
Q gi|254780271|r 123 GCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILK 165 (424)
Q Consensus 123 GvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~ 165 (424)
|||||.++|.||+.++.||+=.|.- -|. ..|..+..++..
T Consensus 2 GsGKstigk~LA~~L~~~fiD~D~~--ie~-~~g~si~eif~~ 41 (158)
T pfam01202 2 GAGKTTIGRLLAKALGLPFIDTDQE--IEK-RTGMSIAEIFEE 41 (158)
T ss_pred CCCHHHHHHHHHHHHCCCEEECHHH--HHH-HHCCCHHHHHHH
T ss_conf 8977999999999969997887299--998-878899999998
No 341
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.85 E-value=0.018 Score=37.86 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEH---HHHHH------HHHHHCCCCCCCHH
Q ss_conf 522568-35884073321769999999871853--1310---12211------11110355633035
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMA---DATTL------TEAGYVGEDVENII 163 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~v---daT~~------TE~GYvG~Dvesii 163 (424)
-+|.+. -+-++||+|||||-|+|.|+.++... -+.+ +.+.. ..+|||-.++++.+
T Consensus 28 l~i~~GE~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l 94 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRKQIGMVFQNPDNQF 94 (279)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCHHHHC
T ss_conf 6887998999999999659999999972888889649999999985787999743668821856525
No 342
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.84 E-value=0.013 Score=38.79 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=24.8
Q ss_pred CCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 135522568-358840733217699999998718
Q gi|254780271|r 106 SSNVELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 106 ~~~~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+...+|.|. -+.++||+|||||-|.|.|+.++.
T Consensus 19 ~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 4588988999999995899988999999869876
No 343
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.84 E-value=0.018 Score=37.84 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=23.6
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5522568-358840733217699999998718
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-+|.+. .+-++||+|||||.|++.|+.++.
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 78986998999999999869999999972898
No 344
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.81 E-value=0.023 Score=37.17 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 588407332176999999987185
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
|-.-||+|+|||.+|+.|+..+..
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 899898977899999999999846
No 345
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.042 Score=35.28 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=39.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH-----HHHHCCCCCCCHHHHHHHHHH
Q ss_conf 35884073321769999999871---8531310122111-----111035563303577887654
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT-----EAGYVGEDVENIILKLLQAAD 171 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T-----E~GYvG~Dvesii~~L~~~a~ 171 (424)
=|.|.|.+|+|||.||+.|.+.| +.|.+..|.-.+- ..||--+|..--++++...+.
T Consensus 6 viWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~~l~~~lgfs~~dR~~n~~r~~~la~ 70 (175)
T PRK00889 6 TVWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRTNLSKGLGFSKEDRDTNIRRIGFVAH 70 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99988989999999999999999986996799776888875367889898999999999999999
No 346
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=94.79 E-value=0.016 Score=38.19 Aligned_cols=18 Identities=50% Similarity=0.815 Sum_probs=15.8
Q ss_pred CCCEEEEECCCCCHHHHH
Q ss_conf 683588407332176999
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLA 130 (424)
Q Consensus 113 ~~NILliGPTGvGKTelA 130 (424)
=.|.|++-|||+||||-|
T Consensus 37 G~nvLiiAPTGsGKTeAA 54 (814)
T COG1201 37 GENVLIIAPTGSGKTEAA 54 (814)
T ss_pred CCCEEEECCCCCCHHHHH
T ss_conf 984699868999737999
No 347
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.017 Score=37.99 Aligned_cols=30 Identities=33% Similarity=0.718 Sum_probs=22.8
Q ss_pred CCCCCCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 52256835-8840733217699999998718
Q gi|254780271|r 109 VELAKSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
-++.+..+ -++||+|||||-+.|.+|-+..
T Consensus 21 l~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~ 51 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 4887998999999999839999999977999
No 348
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=94.78 E-value=0.03 Score=36.34 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=36.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHH-----HHHHCCCCCCCHHHHHHHHHH
Q ss_conf 5884073321769999999871---8531310122111-----111035563303577887654
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLT-----EAGYVGEDVENIILKLLQAAD 171 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~T-----E~GYvG~Dvesii~~L~~~a~ 171 (424)
|-|.|.+|+|||.||+.|.+.| +.|.+..|.-.+- ..||-=+|..-.++++...|.
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~~~R~~n~~r~~~lak 68 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRIAEVAK 68 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9988989999999999999999975997799768877501257779898999999999999999
No 349
>KOG1051 consensus
Probab=94.78 E-value=0.044 Score=35.19 Aligned_cols=105 Identities=31% Similarity=0.495 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH---CCC
Q ss_conf 9878999997420308--59999999999986588752121013552256835884073321769999999871---853
Q gi|254780271|r 66 PNPQEILRVLDEYVIG--QGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII---DVP 140 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIG--Q~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l---~~P 140 (424)
++|+.-.-.||- ||| +++.+|++.|-. || .|+|-++||..|||||-++.-||+-. ++|
T Consensus 176 l~p~~~~gk~dP-vigr~deeirRvi~iL~----Rr------------~k~NPvLVG~~gvgktaiv~gla~ri~~G~vp 238 (898)
T KOG1051 176 LTPRARQGKLDP-VIGRHDEEIRRVIEILS----RK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVP 238 (898)
T ss_pred CCHHHHCCCCCC-CCCCCHHHHHHHHHHHH----CC------------CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 672443368788-65885288999999981----46------------78996698368777216899999876617888
Q ss_pred EEE-------HHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 131-------0122111111--035563303577887654227765422333223332002
Q gi|254780271|r 141 FTM-------ADATTLTEAG--YVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDKISR 192 (424)
Q Consensus 141 F~~-------vdaT~~TE~G--YvG~Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~ 192 (424)
-.. +|.-.+. +| |-| |.|--+..|+..... ....-|+++||+.-...
T Consensus 239 ~~l~~~~l~~l~~g~l~-aGa~~rg-e~E~rlk~l~k~v~~---~~~gvILfigelh~lvg 294 (898)
T KOG1051 239 ETLKDKKLIALDFGSLV-AGAKRRG-EFEERLKELLKEVES---GGGGVILFLGELHWLVG 294 (898)
T ss_pred CCCCCCCEEEEEHHHCC-CCCCCCH-HHHHHHHHHHHHHHC---CCCCEEEEECCEEEEEC
T ss_conf 53345524898700003-5864212-788999999999854---79868998321432204
No 350
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.77 E-value=0.03 Score=36.33 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5884073321769999999871853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
|...||||+|||.+|+.|++.++..
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~ 26 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNP 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 8988999885999999999980999
No 351
>KOG2543 consensus
Probab=94.75 E-value=0.035 Score=35.83 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHH-HH
Q ss_conf 225683588407332176999999987185313101221-11
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATT-LT 150 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~-~T 150 (424)
...||++.+-|-+|+|||++.|++-+.++.|++-+.+-. ||
T Consensus 27 ~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft 68 (438)
T KOG2543 27 CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFT 68 (438)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCC
T ss_conf 666515799614787455999999860378630541577516
No 352
>PRK10744 phosphate transporter subunit; Provisional
Probab=94.73 E-value=0.026 Score=36.80 Aligned_cols=29 Identities=34% Similarity=0.860 Sum_probs=22.7
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+.- +-++||+|||||-++|.|+.++.
T Consensus 32 ~i~~Ge~~~liG~nGaGKSTLlk~i~gl~~ 61 (257)
T PRK10744 32 DIAKNQVTAFIGPSGCGKSTLLRTFNKMYE 61 (257)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 988998999999999819999999987651
No 353
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.73 E-value=0.017 Score=38.03 Aligned_cols=32 Identities=34% Similarity=0.747 Sum_probs=24.2
Q ss_pred CCCCCCCCE-EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 552256835-88407332176999999987185
Q gi|254780271|r 108 NVELAKSNI-LLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 108 ~~ei~~~NI-LliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-+|.+.-+ -++||+|||||-+.|.+|-+...
T Consensus 20 sl~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p 52 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 779869989999999988099999999769999
No 354
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.73 E-value=0.02 Score=37.53 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3588407332176999999987185
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+-++||+|||||.+.+.+|-++..
T Consensus 32 ~~~iiG~sGsGKTTll~~i~Gl~~p 56 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998699999999669999
No 355
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.70 E-value=0.079 Score=33.36 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3085999999999998658875212101355225683588407332176999999987185
Q gi|254780271|r 79 VIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 79 VIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+.|.+++--.+--.+ |.-. .+-+..+.=+||.||.|.||+.||+.|-+.+..
T Consensus 60 ffGme~~i~~iV~~~----ksAA-----~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~ 111 (358)
T pfam08298 60 FFGMEETIERIVNYF----RHAA-----QGLEERKQILYLLGPVGGGKSSLAERLKKLLEL 111 (358)
T ss_pred CCCHHHHHHHHHHHH----HHHH-----HCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 001599999999999----9997-----236721058999778987758999999987205
No 356
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.69 E-value=0.018 Score=37.91 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=16.0
Q ss_pred CCEEEEECCCCCHHHHHHH
Q ss_conf 8358840733217699999
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQT 132 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~ 132 (424)
+|+|+.+|||+|||+.+=-
T Consensus 1 ~~~lv~~ptGsGKT~~~~~ 19 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALL 19 (144)
T ss_pred CCEEEECCCCCHHHHHHHH
T ss_conf 9999988997179999999
No 357
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.018 Score=37.87 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=24.4
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 225683-5884073321769999999871853
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
+|.+.- +=++||+|||||.+++.|..++..|
T Consensus 29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~~~ 60 (327)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP 60 (327)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98899999999999878999999997488989
No 358
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.025 Score=36.91 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568358840733217699999998718
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|...-+-++||+|||||-+.|.+|-+..
T Consensus 20 ~i~ge~~~iiGpSGsGKSTll~~i~GL~~ 48 (214)
T cd03297 20 DLNEEVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 62997999999997359999999984999
No 359
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.021 Score=37.38 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=22.5
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+.- +-++||+|||||.+.|.+|-+..
T Consensus 22 ~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~~ 51 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999999839999999985999
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.66 E-value=0.12 Score=32.10 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 69987899999742030859-----999999999986588752121013552256835884073321769999999871
Q gi|254780271|r 64 GIPNPQEILRVLDEYVIGQG-----QAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 64 ~~~tP~eI~~~Ld~yVIGQ~-----~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
.++.-+++++.+-+..+||+ ..+..+--.||...-.+--. .......|.=|||+|.-|+|||..+=-||.++
T Consensus 45 ~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~eL~~llg~--~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~ 121 (433)
T PRK00771 45 NVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYEELVKLLGE--EAEILLKPQTILLVGLQGSGKTTTAAKLARYF 121 (433)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 879999999999999714624578998999999999999998496--76566898589997378897899999999999
No 361
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.022 Score=37.27 Aligned_cols=31 Identities=35% Similarity=0.849 Sum_probs=23.5
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+-+|.+.- +-++||+|||||-|.|.||-+..
T Consensus 23 sl~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~ 54 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 88987998999999997369999999977999
No 362
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.60 E-value=0.038 Score=35.62 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=37.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCC
Q ss_conf 835884073321769999999871853131012211111103556
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGED 158 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~D 158 (424)
|-+-.+||--+|||-|+++||...|.||+-.-+-.|.....-|.+
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~v~~~l~gde 53 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDE 53 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 135564576657179999999996887312778999999848964
No 363
>PRK13808 adenylate kinase; Provisional
Probab=94.58 E-value=0.037 Score=35.68 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 35884073321769999999871853131
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
||+|+||.|+||.-.|++|++.++.|.+-
T Consensus 2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIS 30 (297)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (297)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 59997899998589999999986988675
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.58 E-value=0.044 Score=35.17 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=33.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHHHH-----HHHCCCCCCCHHHHHHHH
Q ss_conf 5884073321769999999871---85313101221111-----110355633035778876
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII---DVPFTMADATTLTE-----AGYVGEDVENIILKLLQA 169 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~TE-----~GYvG~Dvesii~~L~~~ 169 (424)
|-|.|.+|+|||.||+.|.+.+ +.|.+..|.-.+-+ .||-=+|..-.++++...
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~~l~~~lgys~~~R~~n~~r~~~l 63 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEV 63 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89879999999999999999999869975997748899773655598878899999999999
No 365
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=94.55 E-value=0.026 Score=36.70 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
|.++||+|||||.+.|=|-++..
T Consensus 22 ~vi~GlSGsGKsT~vrmlNRLIE 44 (372)
T TIGR01186 22 FVIMGLSGSGKSTLVRMLNRLIE 44 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99977899857899999872257
No 366
>PRK05480 uridine kinase; Provisional
Probab=94.55 E-value=0.032 Score=36.15 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 588407332176999999987185
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
|...||+|+|||.+|+.|++.+..
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999899977899999999998086
No 367
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.025 Score=36.91 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH---HHH------HHHHHCCCCCCCHH
Q ss_conf 22568-35884073321769999999871853--131012---211------11110355633035
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADA---TTL------TEAGYVGEDVENII 163 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vda---T~~------TE~GYvG~Dvesii 163 (424)
+|.+. -+-++||+|||||-++|.|+.++..- -+.++- +.. ..+|||-.++++.+
T Consensus 26 ~i~~GE~vaivG~nGsGKSTL~~~l~Gll~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~p~~~~ 91 (276)
T PRK13650 26 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGSIIIDGDLLTEENVWEIRHKIGMVFQNPDNQF 91 (276)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCEEEEEECCCHHC
T ss_conf 998998999999999879999999973889886089999999986776887641469976720105
No 368
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.53 E-value=0.03 Score=36.27 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHH-HHHHHC-CCC
Q ss_conf 5884073321769999999871853131012211-111103-556
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTL-TEAGYV-GED 158 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~-TE~GYv-G~D 158 (424)
|.+.||+|+|||-|.+.|-+..+ |.+.+ ++++ |-.+=+ |+|
T Consensus 5 ivvsgPSGaGK~Tli~~l~~~~~-~~~~~-s~s~tTRp~e~~g~d 47 (184)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQ-TQLLV-AHRYITRPASAGSEN 47 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCEEE-EEEECCCCCCCCCCC
T ss_conf 99989986999999999984489-98899-987237899999968
No 369
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.024 Score=37.04 Aligned_cols=31 Identities=35% Similarity=0.748 Sum_probs=23.8
Q ss_pred CCCCCCCCEE-EEECCCCCHHHHHHHHHHHHC
Q ss_conf 5522568358-840733217699999998718
Q gi|254780271|r 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~NIL-liGPTGvGKTelAr~LAk~l~ 138 (424)
+-+|.+.-++ ++||+|||||-|.|.+|-++.
T Consensus 19 s~~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~ 50 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87988998999999996359999999974999
No 370
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.025 Score=36.90 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=33.9
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHH---------HHHHHCCCCCCCH
Q ss_conf 5522568-35884073321769999999871853--131012211---------1111035563303
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTL---------TEAGYVGEDVENI 162 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~---------TE~GYvG~Dvesi 162 (424)
.-.|.+. -+.++||+|||||-|+|.|+.++... -+.++-... ..+|||-.+.++.
T Consensus 29 s~~i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~vfQ~p~~~ 95 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQ 95 (269)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEEEEECHHHH
T ss_conf 8998599899999999997999999996497998509999999999889899975026998871320
No 371
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.51 E-value=0.031 Score=36.23 Aligned_cols=31 Identities=42% Similarity=0.893 Sum_probs=24.3
Q ss_pred CCCCCCCE-EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 52256835-88407332176999999987185
Q gi|254780271|r 109 VELAKSNI-LLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~~NI-LliGPTGvGKTelAr~LAk~l~~ 139 (424)
.+|.+.-+ -++||+|||||-+.|.|+.++..
T Consensus 21 l~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~~ 52 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDL 52 (227)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 78879989999999998199999999744502
No 372
>pfam00406 ADK Adenylate kinase.
Probab=94.50 E-value=0.025 Score=36.89 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.7
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 84073321769999999871853131
Q gi|254780271|r 118 LVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 118 liGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|+||.|+||+..|+.||+-++.+.+-
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is 26 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLS 26 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 91889898599999999985990676
No 373
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=94.50 E-value=0.021 Score=37.44 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=19.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35884073321769999999871
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l 137 (424)
=+=|+||+|+|||.|-|.+|=+=
T Consensus 28 lvaLLGPSGSGKsTLLR~iAGLe 50 (241)
T TIGR00968 28 LVALLGPSGSGKSTLLRVIAGLE 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79854689873789999983579
No 374
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.48 E-value=0.024 Score=36.99 Aligned_cols=30 Identities=30% Similarity=0.659 Sum_probs=23.4
Q ss_pred CCCCCCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 52256835-8840733217699999998718
Q gi|254780271|r 109 VELAKSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+.-+ -++||+|||||-|.|.||-+..
T Consensus 38 l~I~~GE~~~llGpSGsGKSTLlr~iaGl~~ 68 (378)
T PRK09452 38 LTINNGEFLTLLGPSGCGKTTVLRLIAGFET 68 (378)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7999998999998999769999999976999
No 375
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.021 Score=37.48 Aligned_cols=30 Identities=40% Similarity=0.818 Sum_probs=22.8
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5225683-58840733217699999998718
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+.- +-++||+|||||-+.|.||-+..
T Consensus 25 l~i~~Ge~~~llGpsG~GKTTllr~iaGl~~ 55 (358)
T PRK11650 25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (358)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7988998999999986369999999976999
No 376
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.45 E-value=0.031 Score=36.24 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=23.8
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-.|.|. -+-++||+|+|||-|.+.|..++.
T Consensus 25 f~I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9987999999999999979999999960357
No 377
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.44 E-value=0.024 Score=37.03 Aligned_cols=31 Identities=35% Similarity=0.744 Sum_probs=23.3
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5522568-358840733217699999998718
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+-+|.+. -+-++||+|||||.|.+.||-++.
T Consensus 21 sl~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 77986998999999998469999999975998
No 378
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=94.44 E-value=0.019 Score=37.75 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3588407332176999999987185
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+-+|||+|||||.+++++..++..
T Consensus 31 ~~aiiG~SGsGKStl~k~llgll~~ 55 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999987899999999579988
No 379
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.41 E-value=0.026 Score=36.71 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=23.3
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+. -+-++||+|||||.|.|.||-+..
T Consensus 23 l~i~~GE~~~llGpSGsGKSTLlr~iaGL~~ 53 (352)
T PRK10851 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (352)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6999998999999998469999999976999
No 380
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.36 E-value=0.028 Score=36.57 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=27.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHC
Q ss_conf 884073321769999999871853131012211111103
Q gi|254780271|r 117 LLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYV 155 (424)
Q Consensus 117 LliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYv 155 (424)
=..|+||||||.+|+.|++++.-.+-...++-++.=||.
T Consensus 3 GIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~ 41 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 978899877999999999986002699948999787875
No 381
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.35 E-value=0.13 Score=31.88 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=22.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 2256835884073321769999999871
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
|-.|-=+-.+||+|||||.|.|.|-|..
T Consensus 36 epPP~vVavvGPpgvGKtTLiksLvk~y 63 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNY 63 (225)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999699998989977889999999998
No 382
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.085 Score=33.17 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHH---HHH------HHHHHHCCCCC
Q ss_conf 6835884073321769999999871853--13101---221------11111035563
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVP--FTMAD---ATT------LTEAGYVGEDV 159 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~P--F~~vd---aT~------~TE~GYvG~Dv 159 (424)
.+.+-++|||||||+-+...|+-++.+- -++++ -+. ...+.|||.+.
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCC
T ss_conf 9679998899997899999984757777844888993100068778886724627998
No 383
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.33 E-value=0.027 Score=36.63 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=22.3
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.+.+.- +-++||.|||||.+.|.|+-++.
T Consensus 22 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 51 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 887995999999999999999999966778
No 384
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.028 Score=36.50 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=34.5
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH---HHH------HHHHHCCCCCCCHHH
Q ss_conf 5522568-35884073321769999999871853--131012---211------111103556330357
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADA---TTL------TEAGYVGEDVENIIL 164 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vda---T~~------TE~GYvG~Dvesii~ 164 (424)
.-+|.+. -+.++||+|||||-|++.|+.++... =+.++- ++. -.+|||-.++++.+.
T Consensus 30 sl~i~~Ge~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v~G~~i~~~~~~~~~~~ig~VfQ~Pd~q~~ 98 (273)
T PRK13632 30 SFTINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIFGITISKENLKYLRKKIGIIFQNPDNQFI 98 (273)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEEECCCHHCC
T ss_conf 889849989999999998699999999738778887599999999968989987435699877102027
No 385
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.31 E-value=0.031 Score=36.24 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEECCCCCHHHHHHHHH
Q ss_conf 35884073321769999999
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLA 134 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LA 134 (424)
||||+|+.|+|||-|.++|-
T Consensus 1 ~Il~lGl~~sGKTtil~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998899999997
No 386
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.026 Score=36.77 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCCCCCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 552256835-8840733217699999998718
Q gi|254780271|r 108 NVELAKSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
+.+|.+.-| -++||+|||||.|.|.||-+..
T Consensus 18 ~l~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~ 49 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINLISGLTR 49 (352)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99988998999999999629999999976899
No 387
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.026 Score=36.76 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=22.0
Q ss_pred CCCCCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 2256835-8840733217699999998718
Q gi|254780271|r 110 ELAKSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+--+ =++||+|||||-|+|.||-+..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 964897899984898988899999956567
No 388
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.30 E-value=0.028 Score=36.53 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 22568-3588407332176999999987185
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
.|.|. -+-++||||+|||-|++.|+.++..
T Consensus 59 ~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~~p 89 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9849999999999998199999999578727
No 389
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=94.30 E-value=0.026 Score=36.79 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCCEEEEECCCCCHHHHHH
Q ss_conf 6835884073321769999
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQ 131 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr 131 (424)
-+|+++.+|||+|||+.+-
T Consensus 14 g~~~iv~~pTGsGKT~~~~ 32 (167)
T pfam00270 14 GKDVLVQAPTGSGKTLAFL 32 (167)
T ss_pred CCCEEEECCCCCCHHHHHH
T ss_conf 9978998899975899999
No 390
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.30 E-value=0.04 Score=35.46 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=25.2
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 5522568-3588407332176999999987185
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
.-.|.|. .+-++||+|+|||-|++.|+.++..
T Consensus 28 sl~i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 889869999999999998799999999987288
No 391
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.29 E-value=0.032 Score=36.09 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
|++.||.|+|||-.|+-||+.|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99826999880178999999999
No 392
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.29 E-value=0.028 Score=36.54 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCCCCCC-CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35522568-35884073321769999999871
Q gi|254780271|r 107 SNVELAKS-NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 107 ~~~ei~~~-NILliGPTGvGKTelAr~LAk~l 137 (424)
.+-+|.+. -+-++||+|+|||.|+|.|+-+.
T Consensus 20 vsl~i~~Ge~~aliG~sGsGKSTLl~~l~gl~ 51 (248)
T PRK11264 20 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 51 (248)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17798799899999999980999999997589
No 393
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.027 Score=36.68 Aligned_cols=51 Identities=29% Similarity=0.518 Sum_probs=32.0
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHH--------HHHH-HHHHHCCCCCC
Q ss_conf 22568-35884073321769999999871853--13101--------2211-11110355633
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMAD--------ATTL-TEAGYVGEDVE 160 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vd--------aT~~-TE~GYvG~Dve 160 (424)
.|.|. -+-++||||+|||-|++-|..++... -+.+| ...+ ..+|||..++.
T Consensus 23 ~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~ 85 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV 85 (236)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCE
T ss_conf 986999999999999989999999743854887489999999231899999723789950780
No 394
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.023 Score=37.19 Aligned_cols=57 Identities=25% Similarity=0.502 Sum_probs=35.5
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHH----------HHHHHCCCCCCCHHH
Q ss_conf 5522568-35884073321769999999871853--131012211----------111103556330357
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTL----------TEAGYVGEDVENIIL 164 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~----------TE~GYvG~Dvesii~ 164 (424)
.-+|.+. -++++||+|+|||.|++.|+-++... .+.++-..+ ..+|||=.++++.+.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHCCEEEEEECHHHCEE
T ss_conf 3898789899998899988999999953767688984887781331002188763121699997112610
No 395
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.033 Score=36.00 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=22.7
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 225683-588407332176999999987185
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+|.+.- +-++||||||||.|-|-+|-+...
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8779979999899978899999999687877
No 396
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.03 Score=36.36 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+-++||+|||||-++|.|+-++.
T Consensus 35 ~~aiiG~sGsGKSTL~~~l~Gl~~ 58 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999689999999963899
No 397
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.23 E-value=0.031 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHCCCH
Q ss_conf 98789999974203085
Q gi|254780271|r 66 PNPQEILRVLDEYVIGQ 82 (424)
Q Consensus 66 ~tP~eI~~~Ld~yVIGQ 82 (424)
..|--+....|+.|..+
T Consensus 165 ~~Pl~~~~v~D~Vi~~~ 181 (694)
T TIGR03375 165 ASPLFVMNVYDRVVPNQ 181 (694)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999997977612379
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.22 E-value=0.035 Score=35.85 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=24.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 256835884073321769999999871
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
..++||+..|=||+|||-+.+.|=+..
T Consensus 156 ~~~knIii~GGTgSGKTTf~kal~~~I 182 (328)
T TIGR02788 156 ASRKNIIISGGTGSGKTTFLKALVKEI 182 (328)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 738919999068971899999997327
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.03 Score=36.34 Aligned_cols=29 Identities=34% Similarity=0.698 Sum_probs=22.7
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+. -+-++||+|||||.|.+.++-++.
T Consensus 26 ~i~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 987998999999999579999999975999
No 400
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.21 E-value=0.039 Score=35.52 Aligned_cols=30 Identities=33% Similarity=0.637 Sum_probs=23.8
Q ss_pred CCCCCCEE-EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 22568358-8407332176999999987185
Q gi|254780271|r 110 ELAKSNIL-LVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~NIL-liGPTGvGKTelAr~LAk~l~~ 139 (424)
.|.|...+ ++||||+|||.+++.|.++.+.
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 7548987888558888578999999861588
No 401
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.21 E-value=0.033 Score=36.00 Aligned_cols=32 Identities=31% Similarity=0.659 Sum_probs=24.4
Q ss_pred CCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 355225683-58840733217699999998718
Q gi|254780271|r 107 SNVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 107 ~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
..-+|.+.. +-++||+|||||.|.+.|+-++.
T Consensus 20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 178884997999988999989999999964677
No 402
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.031 Score=36.26 Aligned_cols=31 Identities=32% Similarity=0.673 Sum_probs=24.5
Q ss_pred CCCCCC-CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 552256-8358840733217699999998718
Q gi|254780271|r 108 NVELAK-SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~-~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-+|.+ ..+.++||+|+|||.|++.|+.++.
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 89985998999999999839999999976775
No 403
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.17 E-value=0.034 Score=35.97 Aligned_cols=30 Identities=20% Similarity=0.694 Sum_probs=23.1
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5225683-58840733217699999998718
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+.- +-++||+|+|||.+.|.|+-++.
T Consensus 22 ~~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8987998999999999809999999963899
No 404
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.16 E-value=0.03 Score=36.29 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=35.5
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC-----EEEHHHHHH-------HHHHHCCCCCCCHHHH
Q ss_conf 22568-35884073321769999999871853-----131012211-------1111035563303577
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDVP-----FTMADATTL-------TEAGYVGEDVENIILK 165 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~P-----F~~vdaT~~-------TE~GYvG~Dvesii~~ 165 (424)
+|.+. -+-++||+|||||-|+|.|+-++..- +--.|.+.. ..+|||-.++++.+..
T Consensus 33 ~i~~GE~v~iiG~nGsGKSTL~r~l~gl~~P~~G~I~i~G~~~~~~~~~~~~r~~ig~vfQ~P~~~l~~ 101 (281)
T PRK13633 33 EVKKGEFLVILGHNGSGKSTIAKHMNALLLPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 101 (281)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCEEEEEECCCCCCCH
T ss_conf 887998999999999849999999975887888569999998788566999873608986688642028
No 405
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.14 E-value=0.033 Score=35.99 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=24.3
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 522568-3588407332176999999987185
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-.|.+. .+.++||+|+|||.|++.|+.++..
T Consensus 25 l~i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p 56 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99869989999999999899999999679718
No 406
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=94.13 E-value=0.035 Score=35.81 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=43.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCE------EEHHHHHHHHH-----H--HC--CC-CCCCHHHHHHHHHHHHHHHH-
Q ss_conf 358840733217699999998718531------31012211111-----1--03--55-63303577887654227765-
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVPF------TMADATTLTEA-----G--YV--GE-DVENIILKLLQAADYNVERA- 177 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~PF------~~vdaT~~TE~-----G--Yv--G~-Dvesii~~L~~~a~~~v~~a- 177 (424)
|++|+||-|+||=-.|++||+-++.|- .+....+=|+. . |+ |. =.+.++-+|+.........+
T Consensus 1 ~~~~lGpPGsGKGTQa~~i~~~~gl~HISTGDllR~~~~~~T~LG~~~k~y~y~~~G~LVPD~~v~~lv~~rl~~~~~~~ 80 (232)
T TIGR01351 1 RLILLGPPGSGKGTQAKRIAEKLGLPHISTGDLLRAAVKAGTPLGKKAKEYNYMDKGELVPDEIVNQLVKERLQQNPDCV 80 (232)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 94675598987667999999860885020258999998707977898732672003775778999999999974560001
Q ss_pred ----HHHHH
Q ss_conf ----42233
Q gi|254780271|r 178 ----QRGIV 182 (424)
Q Consensus 178 ----~~~iv 182 (424)
+.|-|
T Consensus 81 ~~~~~~GfI 89 (232)
T TIGR01351 81 SLKSENGFI 89 (232)
T ss_pred EEEECCCEE
T ss_conf 101068626
No 407
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.13 E-value=0.036 Score=35.80 Aligned_cols=51 Identities=27% Similarity=0.531 Sum_probs=31.5
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH--------HHH-HHHHHCCCCC
Q ss_conf 522568-35884073321769999999871853--131012--------211-1111035563
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMADA--------TTL-TEAGYVGEDV 159 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vda--------T~~-TE~GYvG~Dv 159 (424)
-.|.|. -+-++||||+|||-|++.|+.++... -+.+|- ..+ ..++||..++
T Consensus 24 l~i~~G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 86 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 997699999999999998999999982386188518999999923189999974069991589
No 408
>KOG0354 consensus
Probab=94.13 E-value=0.029 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l 137 (424)
-+|+|..=|||+|||.||=..++-.
T Consensus 76 gkNtii~lPTG~GKTfIAa~Vm~nh 100 (746)
T KOG0354 76 GKNTIIALPTGSGKTFIAAVIMKNH 100 (746)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 6876999535998610479999999
No 409
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=94.13 E-value=0.41 Score=28.37 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.|+-+-+-||-|+|||.|.-..-..+.
T Consensus 60 ~~kGlYl~G~VGrGKTmLMDlFy~~lp 86 (361)
T pfam03969 60 PVRGLYLWGGVGRGKTHLMDSFFESLP 86 (361)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 998689889988869999999998677
No 410
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.11 E-value=0.036 Score=35.75 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=22.7
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+. -+-++||+|||||-|.|.|+-+..
T Consensus 21 l~i~~Ge~~~ivGpSGsGKSTLL~~i~gL~~ 51 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 5988998999999998449999999981999
No 411
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.025 Score=36.87 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=22.1
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5225683-5884073321769999999871
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l 137 (424)
-+|.+.- +-++||+|||||-|+|.|+-+.
T Consensus 33 ~~i~~GE~l~ivGeSGsGKSTL~r~i~gl~ 62 (266)
T PRK10419 33 LTLKSGETVALLGRSGCGKSTLARLLVGLE 62 (266)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 588899899999999977999999996699
No 412
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.033 Score=36.01 Aligned_cols=29 Identities=21% Similarity=0.660 Sum_probs=22.3
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+.- +-++||+|||||-++|.++-+..
T Consensus 22 ~i~~Ge~~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 887998999999999729999999975999
No 413
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.03 Score=36.30 Aligned_cols=55 Identities=24% Similarity=0.443 Sum_probs=33.8
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC----------CEEEHHHHHH-HHHHHCCCCCCCHHH
Q ss_conf 225683-588407332176999999987185----------3131012211-111103556330357
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV----------PFTMADATTL-TEAGYVGEDVENIIL 164 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~----------PF~~vdaT~~-TE~GYvG~Dvesii~ 164 (424)
.|.+.- +-++||+|+|||.+.+.++-++.. ++.+.+...+ ..+|||-.++++.+.
T Consensus 26 ~i~~Ge~~aliG~NGaGKSTLl~~i~Gll~p~~G~I~i~G~~i~~~~~~~~r~~ig~vfQ~p~~~l~ 92 (277)
T PRK13652 26 IAGRKQRIAVIGPNGAGKSTLFKHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92 (277)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCCEEEEECCCHHHC
T ss_conf 9989989999999994799999999669999846999999999989999997132899877622213
No 414
>PRK06696 uridine kinase; Validated
Probab=94.08 E-value=0.057 Score=34.39 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHH---CCCEEEHHHHHH
Q ss_conf 5884073321769999999871---853131012211
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII---DVPFTMADATTL 149 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l---~~PF~~vdaT~~ 149 (424)
|-.-||+|+|||.+|+.||..+ +.|.+.+-+--|
T Consensus 29 VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf 65 (227)
T PRK06696 29 VAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDF 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9977899878799999999999746994899715443
No 415
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.07 E-value=0.04 Score=35.46 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHH-HHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 89872078426721110578999987426-779999999987449899996899
Q gi|254780271|r 301 PEFIGRLPVLATLEDLDENSLIRILSEPK-NALIKQYQCLFDMEDVELVFHEDA 353 (424)
Q Consensus 301 PEl~GRlPiiV~L~~Lt~edl~rILtepk-nsLikQy~~Ll~~egV~L~FtdeA 353 (424)
-+.--+=|-||.+++|+- |.....+++ ..++-+....|+..||..-||...
T Consensus 350 ~~v~~~~~~rVvIDsls~--~~~~~~~~~~r~~l~~L~~~Lk~~gvT~l~t~~~ 401 (501)
T PRK09302 350 REIEEFKPSRVAVDPLSA--LARGGSLNEFRQFVIRLTDYLKQEEITGLFTNLT 401 (501)
T ss_pred HHHHHCCCCEEEECCHHH--HHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999972998999958068--7652685999999999999997689789997612
No 416
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.07 E-value=0.026 Score=36.74 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=37.2
Q ss_pred HCCCCEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2078426721----110578999987426779999999987449899996899999999551067874236899999967
Q gi|254780271|r 305 GRLPVLATLE----DLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIARCAIAHKTGARGLRSILEKILL 380 (424)
Q Consensus 305 GRlPiiV~L~----~Lt~edl~rILtepknsLikQy~~Ll~~egV~L~FtdeAi~~IA~~A~~~niGAR~LrtIiE~iLe 380 (424)
..-|-++.++ .|+.---.+|| +|+++++.-|..-=+=++-+=+.+++||+..+-..-| .|+|.--.
T Consensus 445 a~~P~lli~DEp~SaLDvsvqa~Vl-----nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G-----~iVE~G~~ 514 (539)
T COG1123 445 ALEPKLLILDEPVSALDVSVQAQVL-----NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG-----RIVEEGPT 514 (539)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHH-----HHHHHHHHHHCCEEEEEECCHHHHHHHCCEEEEEECC-----EEEEECCH
T ss_conf 5499899964874322789999999-----9999999974988999958789998638668999788-----37776799
Q ss_pred HHHHCCCCC
Q ss_conf 774027678
Q gi|254780271|r 381 DTMFELPML 389 (424)
Q Consensus 381 dimFe~P~~ 389 (424)
+.-|+.|..
T Consensus 515 ~~v~~~p~h 523 (539)
T COG1123 515 EKVFENPQH 523 (539)
T ss_pred HHHHCCCCC
T ss_conf 998449998
No 417
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.035 Score=35.88 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=23.9
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+. -+-++||+|+|||.|++.|+-++.
T Consensus 28 l~I~~Ge~~aiiG~nGsGKSTLl~~l~GLl~ 58 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7986998999999999819999999970788
No 418
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.01 E-value=0.053 Score=34.60 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=18.9
Q ss_pred CEEEEECCCCCHHHHHHHHHH
Q ss_conf 358840733217699999998
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk 135 (424)
-|+|+|++|+|||-|.++|..
T Consensus 16 Ki~ilG~~~sGKTsll~~l~~ 36 (173)
T cd04155 16 RILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899997999988999999856
No 419
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.00 E-value=0.04 Score=35.46 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 52256-83588407332176999999987185
Q gi|254780271|r 109 VELAK-SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~-~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
..|.| .-|-++||||+|||-|++.|+.++..
T Consensus 42 l~I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p 73 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI 73 (257)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 99879999999999998199999999605667
No 420
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.00 E-value=0.062 Score=34.11 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEHHHH-HHHHHHHC-CCC
Q ss_conf 25683588407332176999999987---18531310122-11111103-556
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARI---IDVPFTMADAT-TLTEAGYV-GED 158 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~---l~~PF~~vdaT-~~TE~GYv-G~D 158 (424)
-+-.|+|++|+||+|||-..+.+-.- -+-+.++.|.. .|++.-|- +.|
T Consensus 40 ~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d 92 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATD 92 (410)
T ss_pred HHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCC
T ss_conf 20274799889999889999999999998699099995885499997544776
No 421
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.99 E-value=0.046 Score=35.05 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
|=.-|+||+|||.||+.|.+.+.
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89968888759999999999879
No 422
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.96 E-value=0.038 Score=35.62 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.5
Q ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 52256-83588407332176999999987185
Q gi|254780271|r 109 VELAK-SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~-~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+|.| ..|-++||+|||||-|++.|..++..
T Consensus 25 l~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p 56 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99879999999999998599999999672547
No 423
>PRK08233 hypothetical protein; Provisional
Probab=93.95 E-value=0.047 Score=34.96 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
|-..|+||+|||.+|++|++-+.
T Consensus 6 IgIaGgSgSGKTtla~~l~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99968886789999999999746
No 424
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.94 E-value=0.14 Score=31.64 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf 22568358840733217699999998718531310122111111035563303577887654227765--4223332233
Q gi|254780271|r 110 ELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERA--QRGIVYIDEV 187 (424)
Q Consensus 110 ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesii~~L~~~a~~~v~~a--~~~iv~iDEi 187 (424)
+..|..+++.||=+||||.+.+.|.+.+--+++- |--.|...--..+.+....-.+.. +...+++|||
T Consensus 34 ~~~~~i~~i~GpR~~GKTtllk~l~~~~~~~~iy----------~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEI 103 (398)
T COG1373 34 DLRPFIILILGPRQVGKTTLLKLLIKGLLEEIIY----------INFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEI 103 (398)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEE----------EECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 3578549998886477899999999747773599----------973620001356778999999852225745999833
Q ss_pred HHH
Q ss_conf 320
Q gi|254780271|r 188 DKI 190 (424)
Q Consensus 188 dKi 190 (424)
...
T Consensus 104 q~v 106 (398)
T COG1373 104 QNV 106 (398)
T ss_pred CCC
T ss_conf 376
No 425
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.94 E-value=0.034 Score=35.94 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=21.8
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+. -+-++||+|+|||.|.|.|+-+..
T Consensus 27 ~i~~Gei~~iiG~sGsGKSTLl~~i~gl~~ 56 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 887997999998999819999999965999
No 426
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.92 E-value=0.037 Score=35.71 Aligned_cols=31 Identities=29% Similarity=0.629 Sum_probs=23.7
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-+|.+.- +-++||+|||||.+.|.|+-+..
T Consensus 32 s~~I~~GEiv~LiG~nGaGKSTLlr~i~Gl~~ 63 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 75887998999998998889999999965898
No 427
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=93.92 E-value=0.11 Score=32.43 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=31.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHH
Q ss_conf 588407332176999999987185313101221111
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTE 151 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE 151 (424)
|+|=|||-+|||-|||.|-..++.||.-+-.-.|.+
T Consensus 4 I~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~ 39 (174)
T pfam07931 4 ILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVE 39 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 997489988879999999984747467642858887
No 428
>PRK09401 reverse gyrase; Reviewed
Probab=93.91 E-value=0.15 Score=31.47 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 256835884073321769999999871
Q gi|254780271|r 111 LAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 111 i~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
+.-++.-++-|||+|||-.-=.+|-++
T Consensus 91 ~~g~SFaiiAPTG~GKTtfgl~~sly~ 117 (1176)
T PRK09401 91 LLGESFAIIAPTGVGKTTFGLVMALYL 117 (1176)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 668974898889988889999999999
No 429
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.038 Score=35.59 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=23.3
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+. -+-++||+|||||.|.|.|+.++.
T Consensus 22 l~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~ 52 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999998999999998339999999974999
No 430
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.035 Score=35.84 Aligned_cols=54 Identities=30% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHH---HH----HH----HHHHHCCCCCCCHH
Q ss_conf 22568-35884073321769999999871853--13101---22----11----11110355633035
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTMAD---AT----TL----TEAGYVGEDVENII 163 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~vd---aT----~~----TE~GYvG~Dvesii 163 (424)
+|.+. -+-++||+|||||-|.|.|+-++..- -+.++ .+ ++ ..+|||=.++++.+
T Consensus 29 ~i~~GE~v~iiG~nGsGKSTLl~~l~GLl~p~~G~V~i~G~~i~~~~~~~~~~r~~iG~VfQ~P~~~l 96 (287)
T PRK13637 29 EIEDGEFVALIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHCEEEEEECCCCCC
T ss_conf 98799899999999939999999997399888726999999987888677888741789961752023
No 431
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.059 Score=34.24 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 588407332176999999987185313
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
|-.-||-|+|||-||++||+-++++..
T Consensus 7 IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 7 IVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 998446446878999999988388502
No 432
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=93.82 E-value=0.032 Score=36.17 Aligned_cols=105 Identities=23% Similarity=0.388 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 26998789999974203---0859999999999986588752121013---55225683588407332176999999987
Q gi|254780271|r 63 EGIPNPQEILRVLDEYV---IGQGQAKKVLAVAVHNHYKRLAHSSKSS---NVELAKSNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 63 ~~~~tP~eI~~~Ld~yV---IGQ~~AKkavAvAv~nh~rR~~~~~~~~---~~ei~~~NILliGPTGvGKTelAr~LAk~ 136 (424)
..++-|.++..+=.+|= +--..+--.++--+.++.-+...+.... =.+|.---+|+.||+|+||+|+|=.|=+-
T Consensus 89 k~~~~p~~l~~~a~~~~~pil~s~~~ts~l~~~l~~yL~~~lA~~~~vHGvl~~I~GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 89 KGLPIPEELLDAAKKYNIPILTSKLSTSELSFTLTNYLSRPLAERVNVHGVLLDIFGVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999789999988709966985331899999999986131052025546899994258999878988776899999984
Q ss_pred HCCCEEEHHHHHHHH---HHHCCCCCCCHHHHHHHH
Q ss_conf 185313101221111---110355633035778876
Q gi|254780271|r 137 IDVPFTMADATTLTE---AGYVGEDVENIILKLLQA 169 (424)
Q Consensus 137 l~~PF~~vdaT~~TE---~GYvG~Dvesii~~L~~~ 169 (424)
-.. ++--|+..+.. --++|+ ...++..|++.
T Consensus 169 ghr-LVaDD~V~i~~~~~~~L~gr-~pe~l~gllEI 202 (308)
T COG1493 169 GHR-LVADDAVEIFREGGNRLVGR-APELLAGLLEI 202 (308)
T ss_pred CCC-EECCCCEEEEECCCCEEEEC-CHHHHCCCEEE
T ss_conf 550-13256078884369767604-82786483785
No 433
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.79 E-value=0.32 Score=29.08 Aligned_cols=128 Identities=26% Similarity=0.290 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHH-CCC-----HHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9878999997420-308-----5999999999998658875212--1013552256835884073321769999999871
Q gi|254780271|r 66 PNPQEILRVLDEY-VIG-----QGQAKKVLAVAVHNHYKRLAHS--SKSSNVELAKSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 66 ~tP~eI~~~Ld~y-VIG-----Q~~AKkavAvAv~nh~rR~~~~--~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l 137 (424)
.+-.+|.+.|-+. .-. -+..+.++..++.+-++-.... ......+=.|.=|||+|.-|||||...=-||+.+
T Consensus 84 e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 84 ETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999999999875102368988999999999999984655444436552358986799999348886371799999999
Q ss_pred ---CCCEEEHHHHHHHHH------------------HHCCCCCCCHHHHHHHHHHHH---H------HHHHHHHHHHHHH
Q ss_conf ---853131012211111------------------103556330357788765422---7------7654223332233
Q gi|254780271|r 138 ---DVPFTMADATTLTEA------------------GYVGEDVENIILKLLQAADYN---V------ERAQRGIVYIDEV 187 (424)
Q Consensus 138 ---~~PF~~vdaT~~TE~------------------GYvG~Dvesii~~L~~~a~~~---v------~~a~~~iv~iDEi 187 (424)
+-.-+.+-+-+|--+ |--|.|+-++++|-++.|.-. + -+-+.-.=+++|.
T Consensus 164 ~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL 243 (340)
T COG0552 164 KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDEL 243 (340)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 97898699982334789999999999999599278259999808999999999997699999996755445736689999
Q ss_pred HHHCCC
Q ss_conf 320023
Q gi|254780271|r 188 DKISRK 193 (424)
Q Consensus 188 dKi~~~ 193 (424)
.||.+.
T Consensus 244 ~KI~rV 249 (340)
T COG0552 244 KKIVRV 249 (340)
T ss_pred HHHHHH
T ss_conf 999998
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.78 E-value=0.044 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.606 Sum_probs=24.3
Q ss_pred CCCCCC-CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 552256-8358840733217699999998718
Q gi|254780271|r 108 NVELAK-SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~-~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-.|.| ..+-++||+|||||-|++.|+.++.
T Consensus 22 ~l~i~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99985999999999999809999999966666
No 435
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.046 Score=35.01 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=22.0
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+. -+-++||+|+|||.|.+.|+-+..
T Consensus 31 ~i~~GE~v~iiG~sGsGKSTLl~~i~Gl~~ 60 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 988998999999999409999999966999
No 436
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.77 E-value=0.049 Score=34.83 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-.|.+. -+.++||+|+|||-+.+.|+.++.
T Consensus 23 l~i~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 9986999999999998759999999986176
No 437
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.043 Score=35.25 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH-------HHH----HHHHHCCCCCCCHH
Q ss_conf 52256-835884073321769999999871853--131012-------211----11110355633035
Q gi|254780271|r 109 VELAK-SNILLVGPTGCGKTYLAQTLARIIDVP--FTMADA-------TTL----TEAGYVGEDVENII 163 (424)
Q Consensus 109 ~ei~~-~NILliGPTGvGKTelAr~LAk~l~~P--F~~vda-------T~~----TE~GYvG~Dvesii 163 (424)
-+|.+ .-+-++||+|+|||.+++.|+-++..- =+.++- ... ..+|||-.++++.+
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~P~~G~I~v~G~~i~~~~~~~~~~r~~vg~vfQ~p~~ql 91 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLHFNGILKPSSGSVLIKGEPIKYDKKSLLNVRKTVGIVFQNPDDQL 91 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCEEEECCCHHHH
T ss_conf 899899899999999964999999997398999639999999998880659999874159933835765
No 438
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.76 E-value=0.047 Score=34.95 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=22.6
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-.|.+.. +.++||+|||||-+.+.++-+..
T Consensus 18 sl~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~ 49 (206)
T TIGR03608 18 NLTIEKGKMVAIVGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 77986998999987999709999999975999
No 439
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=93.75 E-value=0.055 Score=34.47 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=17.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 83588407332176999999987
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~ 136 (424)
-|-|++||||+|||-+.-.|+-.
T Consensus 457 GHtlIiGpTGsGKTvll~fl~aq 479 (818)
T PRK13830 457 GHTLIFGPTGSGKSTLLALIAAQ 479 (818)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 50589899999889999999999
No 440
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.75 E-value=0.041 Score=35.40 Aligned_cols=32 Identities=41% Similarity=0.592 Sum_probs=24.1
Q ss_pred CCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 355225683-58840733217699999998718
Q gi|254780271|r 107 SNVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 107 ~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
..-+|.+.- +-++||+|+|||.|.|.|+-++.
T Consensus 19 vsl~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~ 51 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 378886998999988999989999999956857
No 441
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.73 E-value=0.035 Score=35.82 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=22.9
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 225683-588407332176999999987185
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+|.+.- +-++||+|||||-+.|.|+-++..
T Consensus 41 ~I~~GE~~~llGpsGsGKSTllr~i~Gl~~p 71 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999989999999984899999999769999
No 442
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=93.73 E-value=0.11 Score=32.47 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6835884073321769999999871853131
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
.+..+++-|||.|||.+|-..+..+..+...
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~~Lv 85 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRSTLV 85 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 7867999679998899999999982698899
No 443
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.73 E-value=0.041 Score=35.37 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 2256-8358840733217699999998718
Q gi|254780271|r 110 ELAK-SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~-~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+|.+ .-+-+|||+|+|||-++|.|+-++.
T Consensus 29 ~I~~GE~v~IiG~nGsGKSTL~k~l~Gll~ 58 (304)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (304)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 985998999987999859999999966999
No 444
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.031 Score=36.24 Aligned_cols=28 Identities=39% Similarity=0.692 Sum_probs=21.2
Q ss_pred CCCCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 2256835-884073321769999999871
Q gi|254780271|r 110 ELAKSNI-LLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 110 ei~~~NI-LliGPTGvGKTelAr~LAk~l 137 (424)
+|.+.-+ =++|++|||||.|+|.|+.+.
T Consensus 37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~ 65 (327)
T PRK11308 37 NLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 98899999999998319999999995699
No 445
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.71 E-value=0.044 Score=35.16 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=24.0
Q ss_pred CCCCCC-CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 552256-83588407332176999999987185
Q gi|254780271|r 108 NVELAK-SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 108 ~~ei~~-~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
..+|.| +-+-++||+|||||-|.+.|+.++..
T Consensus 21 nl~i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999869999999999998099999998555656
No 446
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.69 E-value=0.041 Score=35.39 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=23.8
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
..+|.+.- +-++||+|+|||.|+|.|+-++.
T Consensus 28 s~~i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~ 59 (269)
T PRK11831 28 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 59 (269)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 66887998999993999759999999967988
No 447
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=93.69 E-value=0.05 Score=34.78 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=8.5
Q ss_pred ECCCCCHHHHHHHHHHHHCCC
Q ss_conf 073321769999999871853
Q gi|254780271|r 120 GPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 120 GPTGvGKTelAr~LAk~l~~P 140 (424)
||.|+||+-+||.||+.|+.+
T Consensus 449 GpagsGKsT~ak~lA~~l~~~ 469 (662)
T PRK11860 449 GPTASGKGTLAAAVAQALGYH 469 (662)
T ss_pred CCCCCCHHHHHHHHHHHHCCC
T ss_conf 787568689999999995996
No 448
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.68 E-value=0.041 Score=35.40 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=35.6
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCCE--EEHHH------------HHH-HHHHHCCCCCCCHHH
Q ss_conf 522568-358840733217699999998718531--31012------------211-111103556330357
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDVPF--TMADA------------TTL-TEAGYVGEDVENIIL 164 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~PF--~~vda------------T~~-TE~GYvG~Dvesii~ 164 (424)
-+|.+. -+-++||+|||||-|++.|+-++.... +.++- ..+ ..+|||-.++++.+.
T Consensus 15 l~i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P~~G~i~~~g~~i~~~~~~~~~~~lr~~vG~VfQ~P~~ql~ 86 (276)
T PRK13634 15 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLKPTKGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 86 (276)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCEEEEEECCCHHCC
T ss_conf 799899899999999969999999997499988749999999886888666689987326899987620015
No 449
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.67 E-value=0.038 Score=35.62 Aligned_cols=29 Identities=34% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.|.|. -+-++||+|||||-|++.|+.++.
T Consensus 27 ~i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~ 56 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 976998999999999858999999818952
No 450
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.046 Score=35.03 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHCCC--EEE---HHHHHHHH-------HHHCCCCCCCH
Q ss_conf 22568-35884073321769999999871853--131---01221111-------11035563303
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIIDVP--FTM---ADATTLTE-------AGYVGEDVENI 162 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~~P--F~~---vdaT~~TE-------~GYvG~Dvesi 162 (424)
.|.+. -+-++||+|+|||.|+|.|+-++... -+. .|.+.+.+ +|||-.++++.
T Consensus 24 ~i~~Ge~vaiiG~nGsGKSTL~~~l~Gll~P~~G~I~v~G~d~~~~~~~~~~r~~ig~vfQ~p~~q 89 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89 (274)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHHHEEEEEECCCCC
T ss_conf 984899999999999809999999970685888729999998787056799987317996582110
No 451
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.66 E-value=0.044 Score=35.18 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 588407332176999999987185
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-++||.|||||-|.|.||.++..
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~p 51 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999979997699999999778788
No 452
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.65 E-value=0.039 Score=35.54 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 83588407332176999999987185
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
.-|-++||.|+|||.|+|.|+-.+..
T Consensus 346 e~ialvG~NGsGKSTLlk~l~G~l~p 371 (632)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQA 371 (632)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 77999889884277999986066689
No 453
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.037 Score=35.70 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 8358840733217699999998718
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-|-++||.|+|||.|.|.|+-.+.
T Consensus 339 eriaIvG~NGsGKSTLlk~L~G~l~ 363 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 4799974787138899999728878
No 454
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.63 E-value=0.051 Score=34.68 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=21.8
Q ss_pred ECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 073321769999999871853131
Q gi|254780271|r 120 GPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 120 GPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
||.|+||+-+|+.||+.++.+|+-
T Consensus 291 GPAgSGKSTvAK~lA~~L~~~yLD 314 (512)
T PRK13477 291 GPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEC
T ss_conf 787578789999999981996862
No 455
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.62 E-value=0.052 Score=34.67 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 88407332176999999987185313
Q gi|254780271|r 117 LLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 117 LliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
=.=||+|+||.-+||+||+-|+-.|+
T Consensus 38 AIDGPAGSGKSTVAk~lA~~LG~~yL 63 (863)
T PRK12269 38 ALDGPAGSGKSSVCRLLASRLGAQCL 63 (863)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 98689867889999999998299588
No 456
>PRK10908 cell division protein FtsE; Provisional
Probab=93.61 E-value=0.046 Score=34.99 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 522568-358840733217699999998718
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+|.+. -+-++||+|+|||.|.|.++-++.
T Consensus 23 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 53 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7996998999999998079999999965999
No 457
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.048 Score=34.86 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=23.5
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 522568-3588407332176999999987185
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+|.+. -+-++||+|+|||.|.+.++-++..
T Consensus 20 l~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89889989999999998199999999659999
No 458
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.048 Score=34.92 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=34.5
Q ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH---H-----HH-HHHHHCCCCCCCHHH
Q ss_conf 52256-835884073321769999999871853--131012---2-----11-111103556330357
Q gi|254780271|r 109 VELAK-SNILLVGPTGCGKTYLAQTLARIIDVP--FTMADA---T-----TL-TEAGYVGEDVENIIL 164 (424)
Q Consensus 109 ~ei~~-~NILliGPTGvGKTelAr~LAk~l~~P--F~~vda---T-----~~-TE~GYvG~Dvesii~ 164 (424)
-.|.+ .-+-++||+|+|||.+++.|+-++..- -+.++- + .+ ..+|||-.++++.+.
T Consensus 26 ~~i~~Ge~~aiiG~NGsGKSTLl~~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~iG~vfQ~p~~ql~ 93 (273)
T PRK13647 26 LVIPEGSKTAILGPNGAGKSTLLLHLNGIYTAQRGRVKVMGKVVNEENIRWIRKKVGLVFQDPDDQLF 93 (273)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHCEEEECCCHHHHC
T ss_conf 89889989999999997599999999669888861999999999968989998752488107024305
No 459
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.58 E-value=0.048 Score=34.91 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+.++||.|+|||.|.|.|+-++.
T Consensus 29 i~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988999879999999977858
No 460
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.052 Score=34.66 Aligned_cols=50 Identities=32% Similarity=0.614 Sum_probs=31.1
Q ss_pred CCCC-CCEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHHHHHH---------HHHHCCCCC
Q ss_conf 2256-835884073321769999999871853--1310122111---------111035563
Q gi|254780271|r 110 ELAK-SNILLVGPTGCGKTYLAQTLARIIDVP--FTMADATTLT---------EAGYVGEDV 159 (424)
Q Consensus 110 ei~~-~NILliGPTGvGKTelAr~LAk~l~~P--F~~vdaT~~T---------E~GYvG~Dv 159 (424)
.|.| ..|-.+||||+|||-|.+.|..++... -+.+|-+... ..|||..+.
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 85 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 98799999999899982999999996676678868999999966089999973179993689
No 461
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.53 E-value=0.048 Score=34.92 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=24.3
Q ss_pred CCCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 1355225683-58840733217699999998718
Q gi|254780271|r 106 SSNVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 106 ~~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+..-++.|.- +-++||+|||||.|.+.|+-++.
T Consensus 25 ~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~ 58 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9778991880999998999609999999967897
No 462
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.48 E-value=0.039 Score=35.56 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 225683-58840733217699999998718531310122111111035563303
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
+|.+.- +=++|++|||||.+++.|..++..+- .+ =-++-|-|.|+-++
T Consensus 38 ~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~-~~----sG~I~~~G~~i~~~ 86 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANG-RI----GGSATFNGREILNL 86 (330)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-CE----EEEEEECCEECCCC
T ss_conf 888998999986898779999999976888888-33----58999999986658
No 463
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.46 E-value=0.16 Score=31.18 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=6.6
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 884073321769999999
Q gi|254780271|r 117 LLVGPTGCGKTYLAQTLA 134 (424)
Q Consensus 117 LliGPTGvGKTelAr~LA 134 (424)
.+|||.|||||-|.|.||
T Consensus 31 gLVG~NGsGKSTLlklL~ 48 (638)
T PRK10636 31 GLVGKNGCGKSTLLALLK 48 (638)
T ss_pred EEECCCCCHHHHHHHHHC
T ss_conf 998899988999999980
No 464
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.041 Score=35.35 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=21.8
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 225683-58840733217699999998718
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.+.+.- +-++||+|||||.|.+-+|-++.
T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~ 49 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999999559999999976999
No 465
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.44 E-value=0.055 Score=34.49 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=23.4
Q ss_pred CCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 22568-358840733217699999998718
Q gi|254780271|r 110 ELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 110 ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.|.|. -+-++||+|+|||-|++.|+.++.
T Consensus 36 ~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 982999999999999849999999964546
No 466
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.43 E-value=0.049 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCCCCCE-EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 52256835-8840733217699999998718
Q gi|254780271|r 109 VELAKSNI-LLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~NI-LliGPTGvGKTelAr~LAk~l~ 138 (424)
-.|.+.-+ -++||+|+|||.|.+.|+-++.
T Consensus 31 l~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999998999999998589999999966999
No 467
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.43 E-value=0.053 Score=34.61 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=24.5
Q ss_pred CCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 355225683-58840733217699999998718
Q gi|254780271|r 107 SNVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 107 ~~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
..-.+.|.. +.++||.|+|||.|.|.|+-++.
T Consensus 21 vsf~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 078986994999989999989999999958878
No 468
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=93.42 E-value=0.2 Score=30.58 Aligned_cols=137 Identities=22% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEH
Q ss_conf 99878999997420308599999999999865887521210135522568358840733217699999998718531310
Q gi|254780271|r 65 IPNPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIIDVPFTMA 144 (424)
Q Consensus 65 ~~tP~eI~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~~PF~~v 144 (424)
+-+|..+..|......++ -+=..-||| -+-||.+.... .+--|++-|-||.||||-++-+-+.+
T Consensus 55 iY~~~~~~~y~~~~~~~~-lpPHiyaiA-~~Ay~~m~~~~-------~~QsIiiSGESGaGKTe~~K~il~yL------- 118 (692)
T cd01385 55 IYNPKYVRLYENQQRLGK-LPPHIFAIA-DVAYYNMLRKK-------VNQCIVISGESGSGKTESTNFLIHHL------- 118 (692)
T ss_pred CCCHHHHHHHCCCCCCCC-CCCCHHHHH-HHHHHHHHHCC-------CCEEEEEECCCCCCHHHHHHHHHHHH-------
T ss_conf 999899998738987789-999589999-99999998739-------98289996489898789999999999-------
Q ss_pred HHHHHHHHHHCCCCCCCHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHCCC------CCCCCCCCCCCHHH
Q ss_conf 122111111035563303577---88765422--------77654223332233320023------33333443210256
Q gi|254780271|r 145 DATTLTEAGYVGEDVENIILK---LLQAADYN--------VERAQRGIVYIDEVDKISRK------SDNPSITRDVSGEG 207 (424)
Q Consensus 145 daT~~TE~GYvG~Dvesii~~---L~~~a~~~--------v~~a~~~iv~iDEidKi~~~------~~~~~~~~dvs~~g 207 (424)
+.++..|+.+..++..|.. ++++-.+. -+-..+-.+.+|+--++... .+..-.++...||.
T Consensus 119 --~~~s~~~~~~~~i~~~il~snpILEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gER 196 (692)
T cd01385 119 --TALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDER 196 (692)
T ss_pred --HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEECCCCCCC
T ss_conf --998078987760999998631699986356778998766600578999768884710278887233460031587531
Q ss_pred HHHHHHHHCCCC
Q ss_conf 898875310587
Q gi|254780271|r 208 VQQALLKIMEGT 219 (424)
Q Consensus 208 vq~~LLkileg~ 219 (424)
-++.+.+++.|.
T Consensus 197 NfHIFYqLl~G~ 208 (692)
T cd01385 197 NYHVFYYLLLGA 208 (692)
T ss_pred HHHHHHHHHCCC
T ss_conf 277899998189
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.057 Score=34.39 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-.|.|.- +.++||+|+|||.|.+.||-++.
T Consensus 27 s~~i~~Gei~~llG~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 88980984999998999988999999837878
No 470
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.41 E-value=0.05 Score=34.78 Aligned_cols=28 Identities=29% Similarity=0.663 Sum_probs=21.3
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 225683-5884073321769999999871
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l 137 (424)
+|.+.- +.+|||+|+|||.+-|.|..+-
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 67389789998999998889999997786
No 471
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=93.41 E-value=0.07 Score=33.74 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6835884073321769999999871
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk~l 137 (424)
..|-|++||||+|||.+.-.|+-.+
T Consensus 446 ~GHtlI~G~TGsGKTtl~~fL~aq~ 470 (800)
T PRK13898 446 VGHTLIIGPTGAGKTVLMNFLCAQA 470 (800)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7756998999998999999999998
No 472
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.39 E-value=0.054 Score=34.56 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=23.5
Q ss_pred CCCCCCC-CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5522568-358840733217699999998718
Q gi|254780271|r 108 NVELAKS-NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~-NILliGPTGvGKTelAr~LAk~l~ 138 (424)
+-.|.+. -+.++||.|+|||-|.|.|+-++.
T Consensus 31 sf~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 88981898999999999879999999976977
No 473
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=93.36 E-value=0.078 Score=33.42 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5884073321769999999871853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~P 140 (424)
|+|-|+-|+|||.++|.+++-++.+
T Consensus 18 i~L~G~LGaGKTtfvr~i~~~lg~~ 42 (123)
T pfam02367 18 VLLSGDLGAGKTTFVRGLAKGLGIT 42 (123)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9998887788999999999985998
No 474
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.36 E-value=0.054 Score=34.56 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=29.7
Q ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 522568-358840733217699999998718531310122111111035563303
Q gi|254780271|r 109 VELAKS-NILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 109 ~ei~~~-NILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
-+|.+. -+-++||.|||||.|.|.++.++..- =-++-|-|.++..+
T Consensus 20 ~~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~~~--------~G~I~~~g~~i~~~ 66 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--------SGEILLDGKDLASL 66 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC--------CCEEEECCEECCCC
T ss_conf 788699799999899988999999995798998--------72899999998969
No 475
>PRK06547 hypothetical protein; Provisional
Probab=93.36 E-value=0.088 Score=33.04 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-CCC
Q ss_conf 5884073321769999999871-853
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII-DVP 140 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l-~~P 140 (424)
|+.=||+|+|||.||..||..+ .++
T Consensus 18 VaIDG~sGaGKTTLA~~La~~~~~~~ 43 (184)
T PRK06547 18 VLIDGRSGSGKTTLAGELAACWEGSQ 43 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99868998888999999997457982
No 476
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.35 E-value=0.054 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3588407332176999999987185
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
-+-+|||+|||||.+++.|+-++..
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gll~p 78 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999949998499999999758889
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=93.34 E-value=0.075 Score=33.53 Aligned_cols=25 Identities=48% Similarity=0.781 Sum_probs=19.0
Q ss_pred EEEEECCCCCH-HHHHHHHHHHHCCC
Q ss_conf 58840733217-69999999871853
Q gi|254780271|r 116 ILLVGPTGCGK-TYLAQTLARIIDVP 140 (424)
Q Consensus 116 ILliGPTGvGK-TelAr~LAk~l~~P 140 (424)
|+.+||+|.|| |+|+-.=+++.+.|
T Consensus 4 i~vvGPSGaGKDtLl~~AR~~l~~~~ 29 (183)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAGDP 29 (183)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 89970778867789999999704899
No 478
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.33 E-value=0.069 Score=33.79 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=17.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3588407332176999999987185
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~ 139 (424)
=||+.||||+|||-..-.+-..++.
T Consensus 82 lilitGptGSGKtTtl~a~l~~~~~ 106 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999789999779999999986436
No 479
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.31 E-value=0.075 Score=33.52 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 568358840733217699999998718
Q gi|254780271|r 112 AKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 112 ~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
.++||+.+||||+|||.+-..|..+..
T Consensus 142 ~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699499988888864959999986378
No 480
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.056 Score=34.42 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=15.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 58840733217699999998718
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~ 138 (424)
+.++||+|||||-++++|..++.
T Consensus 45 vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 45 LAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99998999789999999977987
No 481
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.062 Score=34.12 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=21.6
Q ss_pred CCCCCC-EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 225683-5884073321769999999871
Q gi|254780271|r 110 ELAKSN-ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 110 ei~~~N-ILliGPTGvGKTelAr~LAk~l 137 (424)
+|.+.- +-++||+|+|||.|.|.|+-+.
T Consensus 24 ~i~~Ge~~~iiG~nGaGKSTLl~~l~gl~ 52 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88799899999999971999999996588
No 482
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.061 Score=34.16 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35884073321769999999871
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l 137 (424)
-+.++||+|+|||.|++.|+-++
T Consensus 33 ~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99998999972999999995678
No 483
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.27 E-value=0.056 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=20.8
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHH
Q ss_conf 5225683-58840733217699999998
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk 135 (424)
-+|.+.- +-++||+|+|||.|++.|+-
T Consensus 27 l~i~~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 27 LSINAGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 7887998999999999999999999727
No 484
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=93.25 E-value=0.052 Score=34.68 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 68358840733217699999998
Q gi|254780271|r 113 KSNILLVGPTGCGKTYLAQTLAR 135 (424)
Q Consensus 113 ~~NILliGPTGvGKTelAr~LAk 135 (424)
.-|-|.+||||+|||-+.--|+-
T Consensus 426 ~GHt~I~G~TGsGKTtll~fL~a 448 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMTFILA 448 (789)
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 77448878999988999999999
No 485
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.25 E-value=0.052 Score=34.67 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=22.3
Q ss_pred CCCCCCCCE-EEEECCCCCHHHHHHHHHHH
Q ss_conf 552256835-88407332176999999987
Q gi|254780271|r 108 NVELAKSNI-LLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 108 ~~ei~~~NI-LliGPTGvGKTelAr~LAk~ 136 (424)
.-+|.|..| -++||+|+|||.|++.|+-+
T Consensus 21 sl~i~~Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 889849979999999999999999998377
No 486
>PRK10436 hypothetical protein; Provisional
Probab=93.25 E-value=0.078 Score=33.41 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=17.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 35884073321769999999871853
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVP 140 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~P 140 (424)
=||+.||||+|||-.--++-+.++.|
T Consensus 217 liLvtGPTGSGKTTTLya~L~~l~~~ 242 (461)
T PRK10436 217 LVLVTGPTGSGKTVTLYSALQTLNTA 242 (461)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 79997899995699999999743467
No 487
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.25 E-value=0.099 Score=32.69 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=23.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 5884073321769999999871853131
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTM 143 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~ 143 (424)
|-+=|+-|||||-+++.||+.++..++.
T Consensus 2 I~iEG~iGsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEE
T ss_conf 8998888888999999999966994896
No 488
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.25 E-value=0.056 Score=34.45 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=23.4
Q ss_pred CCCCCCCCEE-EEECCCCCHHHHHHHHHHHHC
Q ss_conf 5522568358-840733217699999998718
Q gi|254780271|r 108 NVELAKSNIL-LVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~NIL-liGPTGvGKTelAr~LAk~l~ 138 (424)
..+|.+..++ ++||+|+|||-|.+.++-+..
T Consensus 21 sl~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~ 52 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 77985998999997999539999999962989
No 489
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.05 Score=34.74 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=27.7
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCH
Q ss_conf 5225683-58840733217699999998718531310122111111035563303
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENI 162 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~Dvesi 162 (424)
.+|.+.- +-++||+|||||-+.|.|+-+.. | +. =++-|-|.|+..+
T Consensus 26 l~i~~Ge~~~ivG~SGsGKSTllr~i~gL~~-p----~s---G~I~~~g~~i~~~ 72 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER-P----TS---GSVLVDGTDLTLL 72 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC-C----CC---CEEEECCEECCCC
T ss_conf 8999999999988980589999999967999-9----98---0899999998979
No 490
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.21 E-value=0.076 Score=33.48 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=19.3
Q ss_pred CEEEEECCCCCHHH--HHHHHHHHHCCCEEEHH
Q ss_conf 35884073321769--99999987185313101
Q gi|254780271|r 115 NILLVGPTGCGKTY--LAQTLARIIDVPFTMAD 145 (424)
Q Consensus 115 NILliGPTGvGKTe--lAr~LAk~l~~PF~~vd 145 (424)
|+|++||||+|||. +...|... .-+.+..|
T Consensus 1 H~lvig~tGsGKt~~~vip~ll~~-~~s~vv~D 32 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-PGSVVVLD 32 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 979988999973189999999818-99889994
No 491
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.21 E-value=0.046 Score=35.05 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 588407332176999999987185
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDV 139 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~ 139 (424)
+-++||.|+|||.|.|.|+-++..
T Consensus 29 ~gLiGpNGaGKSTLlk~i~Gll~P 52 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 999899997099999999679868
No 492
>PRK13544 consensus
Probab=93.20 E-value=0.055 Score=34.46 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=23.4
Q ss_pred CCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5225683-58840733217699999998718
Q gi|254780271|r 109 VELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 109 ~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
-.+.|.- +.++||.|+|||.|.|.||-+..
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 22 FTAKQNSLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8982994999999999989999999958806
No 493
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=93.19 E-value=0.057 Score=34.39 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCCCCCC-EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 55225683-58840733217699999998718
Q gi|254780271|r 108 NVELAKSN-ILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 108 ~~ei~~~N-ILliGPTGvGKTelAr~LAk~l~ 138 (424)
.-+|.+.- +-++||+|+|||.|++.|+-++.
T Consensus 26 s~~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~ 57 (258)
T PRK11701 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 77887997999988899889999999856788
No 494
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.17 E-value=0.064 Score=34.03 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=20.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 358840733217699999998718
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~ 138 (424)
-+.+|||+|||||.+-|-+-+++.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899987899757879999960558
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=93.17 E-value=0.068 Score=33.84 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 83588407332176999999987
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARI 136 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~ 136 (424)
-|-|++||||+|||-+.-.||-.
T Consensus 442 GHtlI~GpTGsGKTvll~~l~~q 464 (815)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMALQ 464 (815)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 64389788999899999999999
No 496
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=93.16 E-value=0.087 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 588407332176999999987185313
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFT 142 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~ 142 (424)
|-.=||-|||||-+|+.||+.++..+.
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~~~~~ 28 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 899678567999999999998598210
No 497
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.066 Score=33.93 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=32.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC--EEEHHH---HH------H----HHHHHCCCCCCCHHH
Q ss_conf 35884073321769999999871853--131012---21------1----111103556330357
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVP--FTMADA---TT------L----TEAGYVGEDVENIIL 164 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~P--F~~vda---T~------~----TE~GYvG~Dvesii~ 164 (424)
-+.++||+|+|||.+++.|+-++..- -+.++- +. + ..+|||-.+.++.+.
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~iG~vfQ~p~~ql~ 99 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDDTDITSHSKNKEIKSIRKKVGLVFQFPESQLF 99 (280)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHEEEEEECCCCCCC
T ss_conf 99999599986999999996699988608999999987778201399998764699746521236
No 498
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=93.15 E-value=0.081 Score=33.31 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5884073321769999999871
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARII 137 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l 137 (424)
++.+||+++|||-++|.|+..+
T Consensus 3 v~i~G~~~sGKttl~~~L~~~~ 24 (122)
T pfam03205 3 VLVVGPKDSGKTTLIRKLLNYL 24 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999489998999999999999
No 499
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.056 Score=34.41 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=32.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC--EEEH-------HHHHHH-------HHHHCCCCCCCHHH
Q ss_conf 35884073321769999999871853--1310-------122111-------11103556330357
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARIIDVP--FTMA-------DATTLT-------EAGYVGEDVENIIL 164 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l~~P--F~~v-------daT~~T-------E~GYvG~Dvesii~ 164 (424)
-+-++||+|||||-|++.|+-++... =+.+ ..++.. .+|||-.++++.+.
T Consensus 39 ~~aIiG~nGsGKSTL~~~l~Gll~p~~G~v~~~~~~i~~~~~~~~~~~~~r~~vG~vfQ~P~~qlf 104 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEEEECCCCCCC
T ss_conf 999999999579999999965988999859999998347653155789976367999667764626
No 500
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=93.14 E-value=0.043 Score=35.26 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 588407332176999999987185313101221111110355--633035778876542277654223332233320023
Q gi|254780271|r 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGE--DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRK 193 (424)
Q Consensus 116 ILliGPTGvGKTelAr~LAk~l~~PF~~vdaT~~TE~GYvG~--Dvesii~~L~~~a~~~v~~a~~~iv~iDEidKi~~~ 193 (424)
|=|.||+|+|||-||-+|.+ +|-+.||--+ |-++|=+.|.....+.-+.....|--+=|+=|+-..
T Consensus 22 lWlTGLSGsGKsTiA~Al~~------------~L~~~G~~~~~LDGDnvR~gL~~dLGFS~~DR~eNIRRigEVa~L~~~ 89 (187)
T TIGR00455 22 LWLTGLSGSGKSTIANALEK------------KLEKKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLLVR 89 (187)
T ss_pred EEEECCCCCHHHHHHHHHHH------------HHHHCCCEEEEECCCEEECCCCCCCCCCHHHHCCCCCEEHHHHHHHHH
T ss_conf 85116885635799999999------------999669749997586342477888888856705688353264677764
Q ss_pred CCCCCCCCCCC
Q ss_conf 33333443210
Q gi|254780271|r 194 SDNPSITRDVS 204 (424)
Q Consensus 194 ~~~~~~~~dvs 204 (424)
+....+|-=+|
T Consensus 90 ~G~i~ltsfIS 100 (187)
T TIGR00455 90 NGVIVLTSFIS 100 (187)
T ss_pred CCEEEEEEEEC
T ss_conf 79389984217
Done!