HHsearch alignment for GI: 254780271 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=98.84 E-value=6.2e-09 Score=83.10 Aligned_cols=63 Identities=30% Similarity=0.560 Sum_probs=49.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEHHHHHH
Q ss_conf 2030859999999999986588752121013552256835884073321769999999871--853131012211
Q gi|254780271|r 77 EYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARII--DVPFTMADATTL 149 (424)
Q Consensus 77 ~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l--~~PF~~vdaT~~ 149 (424)
T Consensus 24 ~GlVGQ~~AReAagiiv----~mIk~~------K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~~i~gSEv 88 (395)
T pfam06068 24 EGLVGQEKAREAAGVIV----EMIKEG------KIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEV 88 (395)
T ss_pred CCCCCHHHHHHHHHHHH----HHHHHC------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHEE
T ss_conf 77545499999989999----999727------757738998779998889999999997487997345001112