HHsearch alignment for GI: 254780271 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.95  E-value=1.3e-28  Score=220.92  Aligned_cols=151  Identities=39%  Similarity=0.563  Sum_probs=116.2

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             83588407332176999999987185---3131012211111-----------103556330357788765422776542
Q gi|254780271|r  114 SNILLVGPTGCGKTYLAQTLARIIDV---PFTMADATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQR  179 (424)
Q Consensus       114 ~NILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~  179 (424)
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~   76 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY   76 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf             799988989989999999999996798534488557565425699987058998726242650789-------9983898


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHH
Q ss_conf             23332233320023333334432102568988753105870102565564322243024310001232200046789887
Q gi|254780271|r  180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRII  259 (424)
Q Consensus       180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~  259 (424)
T Consensus        77 ~VillDEIeKa~~--------------~V~~~LL~ild~g~~~d--~~g--------~~v~~~n~i~i~Tsn~g~~~~~~  132 (168)
T pfam07724        77 SIVLIDEIEKAHP--------------GVQNDLLQILEGGTLTD--KQG--------RKVDFRNTLFIMTGNFGSEKISD  132 (168)
T ss_pred             CEEEEHHHHHHCH--------------HHHHHHHHHCCCCCEEC--CCC--------CEEECCCEEEEECCCCCCHHHHH
T ss_conf             4898657766589--------------99999998705870636--999--------67844647999768737299998


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE
Q ss_conf             641234333211110000000168999641056777522068987207842
Q gi|254780271|r  260 SARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL  310 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii  310 (424)
T Consensus       133 ~~~~~~-----~----------~~~~~~~~~~~~~~~~~f~PEflnRid~i  168 (168)
T pfam07724       133 ASRLGK-----S----------PDYELLKELVMDLLKKGFIPEFLGRLPII  168 (168)
T ss_pred             HHHCCC-----C----------CCHHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf             630467-----8----------54799999999999869884673575839