HHsearch alignment for GI: 254780271 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.95 E-value=1.3e-28 Score=220.92 Aligned_cols=151 Identities=39% Similarity=0.563 Sum_probs=116.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCC---CEEEHHHHHHHHH-----------HHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83588407332176999999987185---3131012211111-----------103556330357788765422776542
Q gi|254780271|r 114 SNILLVGPTGCGKTYLAQTLARIIDV---PFTMADATTLTEA-----------GYVGEDVENIILKLLQAADYNVERAQR 179 (424)
Q Consensus 114 ~NILliGPTGvGKTelAr~LAk~l~~---PF~~vdaT~~TE~-----------GYvG~Dvesii~~L~~~a~~~v~~a~~ 179 (424)
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~ 76 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY 76 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf 799988989989999999999996798534488557565425699987058998726242650789-------9983898
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCHHHHHHHH
Q ss_conf 23332233320023333334432102568988753105870102565564322243024310001232200046789887
Q gi|254780271|r 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRII 259 (424)
Q Consensus 180 ~iv~iDEidKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~~~~~~~Idt~nilfi~~gaf~~l~~i~ 259 (424)
T Consensus 77 ~VillDEIeKa~~--------------~V~~~LL~ild~g~~~d--~~g--------~~v~~~n~i~i~Tsn~g~~~~~~ 132 (168)
T pfam07724 77 SIVLIDEIEKAHP--------------GVQNDLLQILEGGTLTD--KQG--------RKVDFRNTLFIMTGNFGSEKISD 132 (168)
T ss_pred CEEEEHHHHHHCH--------------HHHHHHHHHCCCCCEEC--CCC--------CEEECCCEEEEECCCCCCHHHHH
T ss_conf 4898657766589--------------99999998705870636--999--------67844647999768737299998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCE
Q ss_conf 641234333211110000000168999641056777522068987207842
Q gi|254780271|r 260 SARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVL 310 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~~~gliPEl~GRlPii 310 (424)
T Consensus 133 ~~~~~~-----~----------~~~~~~~~~~~~~~~~~f~PEflnRid~i 168 (168)
T pfam07724 133 ASRLGK-----S----------PDYELLKELVMDLLKKGFIPEFLGRLPII 168 (168)
T ss_pred HHHCCC-----C----------CCHHHHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 630467-----8----------54799999999999869884673575839