HHsearch alignment for GI: 254780271 and conserved domain: pfam07728
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.12 E-value=4.9e-11 Score=97.84 Aligned_cols=110 Identities=27% Similarity=0.388 Sum_probs=75.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH-CCCEEEHHHHHHHH-HHHCCC----CCCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35884073321769999999871-85313101221111-110355----633035--77887654227765422333223
Q gi|254780271|r 115 NILLVGPTGCGKTYLAQTLARII-DVPFTMADATTLTE-AGYVGE----DVENII--LKLLQAADYNVERAQRGIVYIDE 186 (424)
Q Consensus 115 NILliGPTGvGKTelAr~LAk~l-~~PF~~vdaT~~TE-~GYvG~----Dvesii--~~L~~~a~~~v~~a~~~iv~iDE 186 (424)
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~------~~g~vl~lDE 74 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAA------REGEIAVLDE 74 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCC------CCCCEEEECC
T ss_conf 9899989975699999999998079831112146556522205734237993578155141010------1286899634
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC-----CCCEEEEECCHH
Q ss_conf 3320023333334432102568988753105870102565564322-----243024310001
Q gi|254780271|r 187 VDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHP-----QQEFLQVDTTNI 244 (424)
Q Consensus 187 idKi~~~~~~~~~~~dvs~~gvq~~LLkileg~~~~v~~~~grk~~-----~~~~~~Idt~ni 244 (424)
T Consensus 75 in~a~~~--------------v~~~L~~~le~~~~~~~~~~~~~~~~~~~~~~~f~viaT~N~ 123 (139)
T pfam07728 75 INRANPD--------------VLNSLLSLLDERRLLLPEGGELVKVAPDDFAKRFRLIATMNP 123 (139)
T ss_pred HHHCCHH--------------HHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 3448999--------------999999997489698368972733666678999699997589