HHsearch alignment for GI: 254780271 and conserved domain: smart00382

>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.25  E-value=1.5e-06  Score=66.49  Aligned_cols=81  Identities=27%  Similarity=0.351  Sum_probs=52.5

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCC---EEEHHHHHHHHHHHC--------CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6835884073321769999999871853---131012211111103--------55633035778876542277654223
Q gi|254780271|r  113 KSNILLVGPTGCGKTYLAQTLARIIDVP---FTMADATTLTEAGYV--------GEDVENIILKLLQAADYNVERAQRGI  181 (424)
Q Consensus       113 ~~NILliGPTGvGKTelAr~LAk~l~~P---F~~vdaT~~TE~GYv--------G~Dvesii~~L~~~a~~~v~~a~~~i  181 (424)
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV   81 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             97899999997029999999998726689968998759989888987653000112210519999999999998449989


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             332233320023
Q gi|254780271|r  182 VYIDEVDKISRK  193 (424)
Q Consensus       182 v~iDEidKi~~~  193 (424)
T Consensus        82 iiiDei~~~~~~   93 (148)
T smart00382       82 LILDEITSLLDA   93 (148)
T ss_pred             EEEECCHHHCCC
T ss_conf             998275021476