HHsearch alignment for GI: 254780271 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.29 E-value=0.0083 Score=40.24 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=40.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9997420308599999999999865887521210135522568358840733217699999998718
Q gi|254780271|r 72 LRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGKTYLAQTLARIID 138 (424)
Q Consensus 72 ~~~Ld~yVIGQ~~AKkavAvAv~nh~rR~~~~~~~~~~ei~~~NILliGPTGvGKTelAr~LAk~l~ 138 (424)
T Consensus 46 y~~F~d~~fG~e~~i~~~V~~~k~AA~g~---------~~~k~IllL~GPvGsGKStl~~~Lk~~lE 103 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGL---------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 50110131164899999999999998446---------71256999988998877999999999999