RPSBLAST alignment for GI: 254780271 and conserved domain: TIGR00390

>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441
 Score =  124 bits (312), Expect = 5e-29
 Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 64/253 (25%)

Query: 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
           D E I  + + A +      Q GI++IDE+DKI++K ++     DVS EGVQ+ LL I+E
Sbjct: 233 DPEEIKQEAIDAVE------QSGIIFIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVE 284

Query: 218 GTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDS 277
           G+  +       K+       V T +ILFI  GAF                    + K S
Sbjct: 285 GSTVNT------KYGM-----VKTDHILFIAAGAFQ-------------------LAKPS 314

Query: 278 DNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQ 337
           D                    LIPE  GR P+   L+ L  +   RIL+EPKN+LIKQY+
Sbjct: 315 D--------------------LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYK 354

Query: 338 CLFDMEDVELVFHEDALREIARCA--IAHKT---GARGLRSILEKILLDTMFELPMLKGV 392
            L   E V + F ++A++ IA  A  +  KT   GAR L ++LE++L D  FE P L G 
Sbjct: 355 ALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSG- 413

Query: 393 SSVIISDDVVKGK 405
            ++ I  D V  K
Sbjct: 414 QNITIDADYVSKK 426