RPSBLAST alignment for GI: 254780271 and conserved domain: TIGR00390
>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441
Score = 124 bits (312), Expect = 5e-29
Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 64/253 (25%)
Query: 158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIME 217
D E I + + A + Q GI++IDE+DKI++K ++ DVS EGVQ+ LL I+E
Sbjct: 233 DPEEIKQEAIDAVE------QSGIIFIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVE 284
Query: 218 GTIASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDS 277
G+ + K+ V T +ILFI GAF + K S
Sbjct: 285 GSTVNT------KYGM-----VKTDHILFIAAGAFQ-------------------LAKPS 314
Query: 278 DNRPVGEVLRNLESEDLVKFGLIPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQ 337
D LIPE GR P+ L+ L + RIL+EPKN+LIKQY+
Sbjct: 315 D--------------------LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYK 354
Query: 338 CLFDMEDVELVFHEDALREIARCA--IAHKT---GARGLRSILEKILLDTMFELPMLKGV 392
L E V + F ++A++ IA A + KT GAR L ++LE++L D FE P L G
Sbjct: 355 ALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSG- 413
Query: 393 SSVIISDDVVKGK 405
++ I D V K
Sbjct: 414 QNITIDADYVSKK 426