HHsearch alignment for GI: 254780272 and conserved domain: COG0447
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism].
Probab=90.06 E-value=0.25 Score=28.88 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=64.8
Q ss_pred HHHHH---HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999---98644873489983155665200002467771455441566441256666----555412899999999999
Q gi|254780272|r 90 MAIYD---TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIK 162 (216)
Q Consensus 90 laIyD---~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~----~G~~~di~~~a~el~~~~ 162 (216)
T Consensus 103 LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCD--LTiAa~nA~FgQTgp~VGSFD~G~Gs~-------------- 166 (282)
T COG0447 103 LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCD--LTIAADNAIFGQTGPKVGSFDGGYGSS-------------- 166 (282)
T ss_pred CCCHHHHHHHHHCCCCEEEEECCEEECCCCEEEEEEE--EEEECCCCHHCCCCCCCCCCCCCCCHH--------------
T ss_conf 0002388898748965599970375058627999854--255000131137899834205864478--------------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCC-----CCHHHHHHCCCCCEEECC
Q ss_conf 999999998719998999997245858-----888999975886446045
Q gi|254780272|r 163 RRLNEIYVKNCGKTYEEVEKTLDRDHI-----MSASEACDWGVVDKVLMS 207 (216)
Q Consensus 163 ~~l~~i~a~~Tg~~~e~i~~~~~rD~~-----lsa~EA~eyGliD~Ii~~ 207 (216)
T Consensus 167 -----ylar~VGqKk-------ArEIwfLcR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 167 -----YLARIVGQKK-------AREIWFLCRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred -----HHHHHHHHHH-------HHHHHHHHHCCCHHHHHHCCCEEEECCH
T ss_conf -----9999864256-------5654123310569999856871231338