HHsearch alignment for GI: 254780272 and conserved domain: COG1030
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=99.25 E-value=1.6e-10 Score=86.83 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=121.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCCCCCCCC
Q ss_conf 779987831898999999999997411576976999936876146789999998644873489983---15566520000
Q gi|254780272|r 43 RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLL 119 (216)
Q Consensus 43 Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~---G~aaS~aslIl 119 (216)
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCHHHHHH
T ss_conf 999925742777999999999999857-9847999960897267999999999875999779999489851104032798
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCC
Q ss_conf 24677714554415664412566665554128999999999999999999987199989999972458588889999758
Q gi|254780272|r 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199 (216)
Q Consensus 120 ~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyG 199 (216)
T Consensus 108 m~~h--iaaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~ay-~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATH--IAAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAVAY-IRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HHCC--HHHHCCCCCCCCCCEECCC-CCCCCCHH---HHHHHHHH-HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCC
T ss_conf 8567--6551798743546502479-98855014---37899999-9999998399869999986421577866798559
Q ss_pred CCCEEECCCCCCC
Q ss_conf 8644604542251
Q gi|254780272|r 200 VVDKVLMSRIDIE 212 (216)
Q Consensus 200 liD~Ii~~~~e~~ 212 (216)
T Consensus 181 vid~iA~~~~ell 193 (436)
T COG1030 181 VIDLIARDLNELL 193 (436)
T ss_pred CCCCCCCCHHHHH
T ss_conf 4003558789999