HHsearch alignment for GI: 254780272 and conserved domain: COG3904
>COG3904 Predicted periplasmic protein [Function unknown].
Probab=97.84 E-value=0.00018 Score=48.74 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred HHHCCCEEE--ECCCCCHHHHHHHHHHHHHHHHCCCCCC-EE-EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 451467799--8783189899999999999741157697-69-9993687614678999999864487348998315566
Q gi|254780272|r 38 RLLKERIVF--VTGQIEDHMATLICAQLLFLEAENPQKE-IS-LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113 (216)
Q Consensus 38 ~L~~~Riif--l~g~I~~~~a~~iia~Ll~L~~~~~~k~-I~-l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS 113 (216)
T Consensus 70 ~~~dgr~l~VvVse~~a~~da~sal~~li----r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~Cas 145 (245)
T COG3904 70 KTLDGRQLPVVVSEPGANVDAASALGRLI----RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCAS 145 (245)
T ss_pred HHCCCCEEEEEECCCCCCCCHHHHHHHHH----HCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHC
T ss_conf 54268535699737977834899999998----55676167777850799857888764014434056722453555523
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHC----CC
Q ss_conf 5200002467771455441566441256666555-4128999999999-9999999999871999899999724----58
Q gi|254780272|r 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ-ASDIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEKTLD----RD 187 (216)
Q Consensus 114 ~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~-~~di~~~a~el~~-~~~~l~~i~a~~Tg~~~e~i~~~~~----rD 187 (216)
T Consensus 146 aCpl~fagGv--rRvve~~ayiGVHq~~~~g~~~r~~~--~~a~Sanq~~tar~a-~ylrEMgigpgLlq~ml~tpp~di 220 (245)
T COG3904 146 ACPLMFAGGV--RRVVEDFAYIGVHQITTTGRRERIVN--GKAKSANQKVTARLA-AYLREMGIGPGLLQMMLATPPSDI 220 (245)
T ss_pred CCHHHHHCCE--EEEECCCCEEEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 4526631251--46612562355642101578666671--766556666699999-999980898799999860894765
Q ss_pred CCCCHHHHHHCCCCCE
Q ss_conf 5888899997588644
Q gi|254780272|r 188 HIMSASEACDWGVVDK 203 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~ 203 (216)
T Consensus 221 r~l~~kem~~~~L~t~ 236 (245)
T COG3904 221 RQLGLKEMTAMKLVTS 236 (245)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 5513778765402256