HHsearch alignment for GI: 254780272 and conserved domain: TIGR02441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=93.12 E-value=0.42 Score=27.42 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCH---------------------HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1898999999999997411576976999936-87614---------------------6789999998644873489983
Q gi|254780272|r 51 IEDHMATLICAQLLFLEAENPQKEISLYINS-PGGVV---------------------TAGMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 51 I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS-pGG~v---------------------~~glaIyD~i~~i~~~V~Ti~~ 108 (216)
T Consensus 38 L~k~l~~Ef~~v~~~l~~~~~v~Sa-VliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~~~~r~E~S~KPiVAAI~ 116 (740)
T TIGR02441 38 LSKELSAEFKEVLNELWTNEAVKSA-VLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQEMFERIEKSKKPIVAAIS 116 (740)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 1378999999999873068252468-897469987032562678987226899999867789999997428987587522
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 1556652000024677714554415664412566------6655541289999999999999999999871999899999
Q gi|254780272|r 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSG------GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 109 G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~------~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
T Consensus 117 GsClGGGLElAlaCh--YRIAtkD~KT~LglPEVlLGlLPGaGgTq--------RLPKl~~vp~aLDm~LTGk------- 179 (740)
T TIGR02441 117 GSCLGGGLELALACH--YRIATKDRKTLLGLPEVLLGLLPGAGGTQ--------RLPKLTGVPAALDMMLTGK------- 179 (740)
T ss_pred CCCCCHHHHHHHHCC--CCEEECCCCCCCCCHHHHHHCCCCCCCCC--------CCCCHHHHHHHHHHHHCCC-------
T ss_conf 631041689987504--41122365453465068982488986442--------3640100023551332587-------
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 7245858888999975886446045
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
T Consensus 180 ------~i~ADrAKk~GiVD~lv~P 198 (740)
T TIGR02441 180 ------KIRADRAKKLGIVDQLVDP 198 (740)
T ss_pred ------CCCCCCCCCCCCEEEEECC
T ss_conf ------3012300114430022346