HHsearch alignment for GI: 254780272 and conserved domain: cd00394
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=100.00 E-value=2.5e-43 Score=294.08 Aligned_cols=159 Identities=35% Similarity=0.591 Sum_probs=152.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 79987831898999999999997411576976999936876146789999998644873489983155665200002467
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~ 123 (216)
T Consensus 1 ii~l~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~~~~~~v~t~~~g~aaS~g~~i~~a~~ 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHCCC
T ss_conf 98966555789999999999999838999978999989998889999999999961999999668737760456651588
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 771455441566441256666555--412899999999999999999998719998999997245858888999975886
Q gi|254780272|r 124 KGMRFALPNARILLHQPSGGFSGQ--ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201 (216)
Q Consensus 124 ~g~R~~~pns~iMiHqps~~~~G~--~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli 201 (216)
T Consensus 81 --~~~~~p~s~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~lta~eA~e~Gli 158 (161)
T cd00394 81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred --CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEECHHHHHHCCCC
T ss_conf --533088740455256214788899999999999999999999999997539999999998507958849999986996
Q ss_pred CEE
Q ss_conf 446
Q gi|254780272|r 202 DKV 204 (216)
Q Consensus 202 D~I 204 (216)
T Consensus 159 D~I 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CCC
T ss_conf 409