HHsearch alignment for GI: 254780272 and conserved domain: cd06558
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.13 E-value=5.6e-05 Score=51.90 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCCHHHH-----------------------HHHHHHHHHCCCCEEE
Q ss_conf 3189899999999999741157697699-993687614678-----------------------9999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGGVVTAG-----------------------MAIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG~v~~g-----------------------laIyD~i~~i~~~V~T 105 (216)
T Consensus 22 al~~~~~~~l~~~~~~~~~---d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 98 (195)
T cd06558 22 ALSLEMLDELAAALDEAEA---DPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIA 98 (195)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9899999999999999974---9995799997499870479975888726666688999999999999999978999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
T Consensus 99 ai~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~G~~p~---~~----~~~~l~~~~----------g~~~a~~l~l 159 (195)
T cd06558 99 AVNGAALGGGLELALACD--IRIAAEDAKFGLPEVKLGLVPG---GG----GTQRLPRLV----------GPARARELLL 159 (195)
T ss_pred EECCCCCCCCCHHHHHCC--EEEEECCCEEECCHHCCCCCCC---CH----HHHHHHHHH----------CHHHHHHHHH
T ss_conf 868852777506466188--8998089857466211433887---21----999999985----------9999999997
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 585888899997588644604542251
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
T Consensus 160 ~g~~~~a~eA~~~Glv~~v~~~-~~l~ 185 (195)
T cd06558 160 TGRRISAEEALELGLVDEVVPD-EELL 185 (195)
T ss_pred CCCCCCHHHHHHCCCCEEEECH-HHHH
T ss_conf 3985779999976962068578-7999