HHsearch alignment for GI: 254780272 and conserved domain: cd07013
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=0 Score=387.02 Aligned_cols=162 Identities=49% Similarity=0.763 Sum_probs=161.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 77998783189899999999999741157697699993687614678999999864487348998315566520000246
Q gi|254780272|r 43 RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122 (216)
Q Consensus 43 Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG 122 (216)
T Consensus 1 Rii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~~~v~tv~~G~aaS~as~i~~aG 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCC
T ss_conf 98998880178999999999999726297999899997998579999999999984799989996304651658999737
Q ss_pred CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCC
Q ss_conf 77714554415664412566665554128999999999999999999987199989999972458588889999758864
Q gi|254780272|r 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202 (216)
Q Consensus 123 ~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD 202 (216)
T Consensus 81 ~~g~R~~~~~s~~MiHq~~~g~~G~~~di~~~~~~l~~~~~~i~~i~a~~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 88881767668998806345657799999999999999999999999998890999999861488236699999859988
Q ss_pred EE
Q ss_conf 46
Q gi|254780272|r 203 KV 204 (216)
Q Consensus 203 ~I 204 (216)
T Consensus 161 ~I 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred CC
T ss_conf 09