HHsearch alignment for GI: 254780272 and conserved domain: cd07013

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00  E-value=0  Score=387.02  Aligned_cols=162  Identities=49%  Similarity=0.763  Sum_probs=161.0

Q ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             77998783189899999999999741157697699993687614678999999864487348998315566520000246
Q gi|254780272|r   43 RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG  122 (216)
Q Consensus        43 Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG  122 (216)
T Consensus         1 Rii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~~~v~tv~~G~aaS~as~i~~aG   80 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCC
T ss_conf             98998880178999999999999726297999899997998579999999999984799989996304651658999737


Q ss_pred             CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCC
Q ss_conf             77714554415664412566665554128999999999999999999987199989999972458588889999758864
Q gi|254780272|r  123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD  202 (216)
Q Consensus       123 ~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD  202 (216)
T Consensus        81 ~~g~R~~~~~s~~MiHq~~~g~~G~~~di~~~~~~l~~~~~~i~~i~a~~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD  160 (162)
T cd07013          81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD  160 (162)
T ss_pred             CCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf             88881767668998806345657799999999999999999999999998890999999861488236699999859988


Q ss_pred             EE
Q ss_conf             46
Q gi|254780272|r  203 KV  204 (216)
Q Consensus       203 ~I  204 (216)
T Consensus       161 ~I  162 (162)
T cd07013         161 TI  162 (162)
T ss_pred             CC
T ss_conf             09