Query gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs 163 out of 2313
Neff 6.0
Searched_HMMs 39220
Date Tue May 24 11:42:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780272.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00277 clpP ATP-dependent Cl 100.0 0 0 483.9 19.6 197 16-212 1-197 (197)
2 PRK12553 ATP-dependent Clp pro 100.0 0 0 485.0 17.7 195 18-212 8-204 (204)
3 PRK12551 ATP-dependent Clp pro 100.0 0 0 480.1 18.1 194 18-211 1-194 (196)
4 KOG0840 consensus 100.0 0 0 478.5 13.8 197 15-211 63-261 (275)
5 CHL00028 clpP ATP-dependent Cl 100.0 0 0 470.7 18.6 196 16-211 1-200 (201)
6 PRK12552 ATP-dependent Clp pro 100.0 0 0 471.8 15.5 183 32-214 20-221 (222)
7 COG0740 ClpP Protease subunit 100.0 0 0 464.6 15.3 197 17-213 2-198 (200)
8 pfam00574 CLP_protease Clp pro 100.0 0 0 413.4 17.8 181 28-208 2-182 (182)
9 TIGR00493 clpP ATP-dependent C 100.0 0 0 399.4 8.6 192 16-207 1-192 (192)
10 cd07013 S14_ClpP Caseinolytic 100.0 0 0 387.0 16.4 162 43-204 1-162 (162)
11 cd07016 S14_ClpP_1 Caseinolyti 100.0 1.4E-45 0 307.6 12.4 156 44-204 2-160 (160)
12 cd00394 Clp_protease_like Case 100.0 2.5E-43 0 294.1 13.9 159 44-204 1-161 (161)
13 cd07021 Clp_protease_NfeD_like 99.9 4.9E-22 1.3E-26 159.6 13.5 162 44-213 3-177 (178)
14 cd07020 Clp_protease_NfeD_1 No 99.7 3.2E-17 8.2E-22 129.2 12.4 167 44-214 3-172 (187)
15 cd07023 S49_Sppa_N_C Signal pe 99.6 1.1E-14 2.9E-19 113.1 13.0 163 44-209 4-202 (208)
16 cd07014 S49_SppA Signal peptid 99.6 2.4E-14 6.2E-19 111.0 11.3 144 55-207 23-169 (177)
17 cd07022 S49_Sppa_36K_type Sign 99.5 3.7E-13 9.5E-18 103.5 12.5 149 55-207 26-206 (214)
18 cd07015 Clp_protease_NfeD Nodu 99.5 2.9E-13 7.4E-18 104.2 11.5 165 44-214 3-172 (172)
19 COG0616 SppA Periplasmic serin 99.5 2.8E-13 7.2E-18 104.3 9.3 163 44-209 63-264 (317)
20 cd07019 S49_SppA_1 Signal pept 99.4 1.2E-12 3.1E-17 100.3 10.6 152 56-210 23-206 (211)
21 COG1030 NfeD Membrane-bound se 99.2 1.6E-10 4.2E-15 86.8 11.8 162 43-212 29-193 (436)
22 PRK10949 protease 4; Provision 99.1 2.5E-09 6.3E-14 79.4 12.2 160 44-206 330-528 (618)
23 TIGR00706 SppA_dom signal pept 99.1 1.8E-09 4.5E-14 80.3 10.4 159 46-207 18-212 (224)
24 cd07018 S49_SppA_67K_type Sign 99.0 1.3E-08 3.3E-13 74.9 11.5 162 45-211 20-216 (222)
25 pfam01972 SDH_sah Serine dehyd 98.9 4.7E-08 1.2E-12 71.3 12.9 149 48-201 70-243 (286)
26 TIGR00705 SppA_67K signal pept 98.6 1.2E-06 3.1E-11 62.4 10.8 159 43-205 323-525 (614)
27 PRK11778 putative periplasmic 98.4 3.5E-06 9E-11 59.5 9.2 160 44-210 70-268 (317)
28 cd06558 crotonase-like Crotona 98.1 5.6E-05 1.4E-09 51.9 10.8 140 50-212 22-185 (195)
29 PRK06142 enoyl-CoA hydratase; 98.1 2.3E-05 6E-10 54.3 8.6 147 45-213 18-202 (271)
30 pfam00378 ECH Enoyl-CoA hydrat 98.1 2.4E-05 6.2E-10 54.2 7.9 135 50-206 13-169 (169)
31 PRK05869 enoyl-CoA hydratase; 98.0 3.4E-05 8.7E-10 53.2 8.3 142 49-213 29-192 (225)
32 PRK06210 enoyl-CoA hydratase; 98.0 0.00011 2.9E-09 49.9 9.9 137 50-208 29-197 (272)
33 pfam01343 Peptidase_S49 Peptid 98.0 3E-05 7.5E-10 53.6 6.8 105 100-207 6-140 (154)
34 PRK05981 enoyl-CoA hydratase; 98.0 9.5E-05 2.4E-09 50.5 9.4 137 50-211 27-194 (266)
35 PRK07510 consensus 97.9 6.6E-05 1.7E-09 51.4 8.4 143 49-214 27-197 (266)
36 PRK08139 enoyl-CoA hydratase; 97.9 7.7E-05 2E-09 51.0 8.6 141 49-213 32-195 (265)
37 PRK05995 enoyl-CoA hydratase; 97.9 3.2E-05 8.3E-10 53.4 6.6 141 50-214 27-192 (261)
38 PRK06494 enoyl-CoA hydratase; 97.9 0.00024 6.2E-09 47.9 10.4 140 50-212 27-186 (259)
39 PRK06495 enoyl-CoA hydratase; 97.9 0.00013 3.4E-09 49.5 8.9 135 49-208 25-183 (257)
40 PRK05870 enoyl-CoA hydratase; 97.9 0.00076 1.9E-08 44.7 12.6 135 50-206 26-182 (254)
41 PRK07938 enoyl-CoA hydratase; 97.9 0.00016 4.1E-09 49.0 9.2 139 49-213 23-184 (249)
42 PRK06688 enoyl-CoA hydratase; 97.9 0.00012 3.2E-09 49.7 8.5 141 50-213 28-193 (263)
43 PRK07658 enoyl-CoA hydratase; 97.9 0.0003 7.8E-09 47.2 10.5 141 49-212 23-186 (257)
44 PRK06951 consensus 97.8 0.00028 7.2E-09 47.4 10.2 140 50-212 24-182 (254)
45 COG3904 Predicted periplasmic 97.8 0.00018 4.5E-09 48.7 9.1 157 38-203 70-236 (245)
46 PRK06143 enoyl-CoA hydratase; 97.8 0.0013 3.3E-08 43.3 13.4 140 50-213 32-194 (260)
47 PRK08138 enoyl-CoA hydratase; 97.8 0.00034 8.6E-09 47.0 10.3 138 49-208 29-186 (260)
48 PRK07830 consensus 97.8 0.00029 7.5E-09 47.4 9.9 141 50-213 34-197 (267)
49 PRK05862 enoyl-CoA hydratase; 97.8 0.00038 9.8E-09 46.6 10.5 142 49-213 26-187 (257)
50 PRK05809 3-hydroxybutyryl-CoA 97.8 0.0004 1E-08 46.5 10.4 141 50-213 27-190 (260)
51 PRK09674 enoyl-CoA hydratase-i 97.8 0.00022 5.6E-09 48.1 9.0 137 50-208 27-183 (257)
52 PRK12319 acetyl-CoA carboxylas 97.8 0.00029 7.3E-09 47.4 9.5 116 62-207 89-214 (256)
53 CHL00198 accA acetyl-CoA carbo 97.8 0.00032 8E-09 47.1 9.6 116 62-207 145-270 (322)
54 PRK08258 enoyl-CoA hydratase; 97.8 0.00017 4.3E-09 48.9 8.1 141 50-212 33-199 (270)
55 PRK05724 acetyl-CoA carboxylas 97.8 0.00029 7.4E-09 47.4 9.3 111 68-207 146-266 (318)
56 PRK08290 enoyl-CoA hydratase; 97.8 0.0002 5E-09 48.5 8.3 140 50-214 27-207 (284)
57 PRK07657 enoyl-CoA hydratase; 97.8 0.00033 8.3E-09 47.1 9.4 141 50-213 28-191 (261)
58 PRK06023 enoyl-CoA hydratase; 97.7 0.00059 1.5E-08 45.4 10.5 146 44-212 15-186 (248)
59 PRK07511 enoyl-CoA hydratase; 97.7 0.00028 7.1E-09 47.5 8.8 139 49-209 25-188 (259)
60 PRK07110 polyketide biosynthes 97.7 0.00059 1.5E-08 45.4 10.2 142 49-213 26-195 (257)
61 PRK09076 enoyl-CoA hydratase; 97.7 0.0011 2.7E-08 43.8 11.4 140 50-212 25-187 (258)
62 PRK11423 methylmalonyl-CoA dec 97.7 0.00055 1.4E-08 45.6 9.9 141 50-213 27-189 (261)
63 PRK07629 consensus 97.7 0.00029 7.4E-09 47.4 8.4 140 50-213 27-191 (261)
64 PRK07468 enoyl-CoA hydratase; 97.7 0.00042 1.1E-08 46.4 9.1 139 50-212 28-191 (262)
65 PRK06127 enoyl-CoA hydratase; 97.7 0.0013 3.2E-08 43.4 11.6 141 50-213 34-199 (269)
66 PRK07659 enoyl-CoA hydratase; 97.7 0.0004 1E-08 46.5 8.9 132 50-207 29-186 (260)
67 PRK06144 enoyl-CoA hydratase; 97.7 0.00054 1.4E-08 45.7 9.5 142 50-213 31-196 (262)
68 pfam01039 Carboxyl_trans Carbo 97.7 0.0027 6.9E-08 41.2 12.7 143 48-209 305-464 (487)
69 PRK06213 enoyl-CoA hydratase; 97.6 0.0008 2E-08 44.6 9.7 141 49-213 24-185 (229)
70 PRK05980 enoyl-CoA hydratase; 97.6 0.0021 5.4E-08 41.9 11.4 140 50-212 26-192 (260)
71 PRK07509 enoyl-CoA hydratase; 97.6 0.0016 4.1E-08 42.7 10.7 135 50-206 26-189 (262)
72 TIGR03210 badI 2-ketocyclohexa 97.6 0.0006 1.5E-08 45.4 8.4 141 50-213 25-187 (256)
73 PRK06563 enoyl-CoA hydratase; 97.5 0.00042 1.1E-08 46.4 7.4 138 50-209 22-182 (255)
74 PRK07260 enoyl-CoA hydratase; 97.5 0.0005 1.3E-08 45.9 7.8 141 50-213 27-193 (260)
75 PRK09120 p-hydroxycinnamoyl Co 97.5 0.00035 8.9E-09 46.9 6.9 141 50-213 32-199 (277)
76 PRK03580 carnitinyl-CoA dehydr 97.5 0.002 5.1E-08 42.1 10.7 142 49-213 25-188 (262)
77 PRK08272 enoyl-CoA hydratase; 97.5 0.00087 2.2E-08 44.4 8.7 138 50-214 33-223 (308)
78 PRK07854 enoyl-CoA hydratase; 97.5 0.0025 6.5E-08 41.4 10.7 135 50-207 23-174 (243)
79 PRK06190 enoyl-CoA hydratase; 97.5 0.002 5.2E-08 42.0 10.2 140 50-212 27-186 (258)
80 PRK08252 enoyl-CoA hydratase; 97.5 0.0016 4.1E-08 42.7 9.6 138 49-208 25-180 (254)
81 PRK09245 enoyl-CoA hydratase; 97.5 0.0017 4.4E-08 42.5 9.7 140 51-213 27-196 (266)
82 PRK08140 enoyl-CoA hydratase; 97.5 0.002 5.2E-08 42.0 10.0 139 50-212 27-191 (262)
83 PRK07112 polyketide biosynthes 97.4 0.0028 7.1E-08 41.2 10.5 135 50-208 27-180 (251)
84 PRK07827 enoyl-CoA hydratase; 97.4 0.0042 1.1E-07 40.1 11.3 134 50-206 26-182 (255)
85 PRK07396 naphthoate synthase; 97.4 0.0019 4.9E-08 42.2 9.4 140 50-213 36-200 (273)
86 PRK05674 gamma-carboxygeranoyl 97.4 0.0018 4.7E-08 42.3 9.3 139 50-212 29-192 (271)
87 PRK07327 enoyl-CoA hydratase; 97.4 0.0032 8.1E-08 40.8 10.5 140 50-212 35-198 (271)
88 PRK07799 enoyl-CoA hydratase; 97.4 0.0014 3.5E-08 43.1 8.5 139 49-209 27-190 (263)
89 TIGR03189 dienoyl_CoA_hyt cycl 97.4 0.0051 1.3E-07 39.5 11.3 136 49-207 22-176 (251)
90 KOG1680 consensus 97.4 0.0007 1.8E-08 45.0 6.7 140 50-213 60-221 (290)
91 PRK08259 enoyl-CoA hydratase; 97.4 0.0025 6.3E-08 41.5 9.6 133 50-207 26-181 (254)
92 PRK05864 enoyl-CoA hydratase; 97.4 0.0018 4.5E-08 42.4 8.7 137 50-207 26-191 (269)
93 PRK08260 enoyl-CoA hydratase; 97.4 0.0015 3.7E-08 43.0 8.3 139 50-211 27-201 (293)
94 PRK08150 enoyl-CoA hydratase; 97.4 0.0015 3.9E-08 42.8 8.3 134 50-208 34-190 (264)
95 PRK12478 enoyl-CoA hydratase; 97.3 0.0031 8E-08 40.9 9.1 138 50-213 28-202 (298)
96 PRK11154 fadJ multifunctional 97.3 0.0044 1.1E-07 39.9 9.6 133 50-208 30-192 (706)
97 COG1024 CaiD Enoyl-CoA hydrata 97.0 0.0012 3.1E-08 43.5 4.7 138 50-212 28-191 (257)
98 PRK11730 fadB multifunctional 96.9 0.0058 1.5E-07 39.2 7.6 132 50-207 30-190 (715)
99 PRK08321 naphthoate synthase; 96.8 0.0075 1.9E-07 38.5 7.3 149 41-213 32-229 (302)
100 PRK05617 enoyl-CoA hydratase; 96.7 0.016 4.1E-07 36.3 8.6 135 50-207 31-192 (356)
101 TIGR00513 accA acetyl-CoA carb 96.7 0.0046 1.2E-07 39.8 5.5 109 68-206 155-274 (329)
102 COG0825 AccA Acetyl-CoA carbox 96.6 0.0045 1.1E-07 39.9 5.4 111 68-207 146-266 (317)
103 PRK08788 enoyl-CoA hydratase; 96.6 0.011 2.8E-07 37.4 7.2 144 43-208 25-209 (286)
104 PRK06072 enoyl-CoA hydratase; 96.5 0.02 5E-07 35.8 8.0 132 50-204 15-165 (240)
105 COG4799 Acetyl-CoA carboxylase 96.1 0.14 3.5E-06 30.5 11.6 144 48-208 337-495 (526)
106 KOG1682 consensus 95.3 0.2 5.1E-06 29.5 8.6 142 43-207 43-212 (287)
107 KOG1681 consensus 94.9 0.0057 1.5E-07 39.2 -0.1 105 91-213 117-221 (292)
108 TIGR01929 menB naphthoate synt 94.6 0.038 9.6E-07 34.0 3.5 95 90-213 105-209 (278)
109 PRK10949 protease 4; Provision 94.4 0.45 1.2E-05 27.2 11.4 188 14-212 59-292 (618)
110 TIGR02441 fa_ox_alpha_mit fatt 93.1 0.42 1.1E-05 27.4 6.5 133 51-207 38-198 (740)
111 PRK05654 acetyl-CoA carboxylas 92.9 0.64 1.6E-05 26.3 7.2 125 46-213 135-274 (288)
112 COG0447 MenB Dihydroxynaphthoi 90.1 0.25 6.3E-06 28.9 2.6 90 90-207 103-204 (282)
113 CHL00174 accD acetyl-CoA carbo 89.8 1.7 4.4E-05 23.6 7.4 125 46-213 154-294 (305)
114 TIGR03134 malonate_gamma malon 82.5 4.2 0.00011 21.1 7.1 68 68-138 62-142 (238)
115 TIGR03200 dearomat_oah 6-oxocy 81.2 2.3 5.9E-05 22.7 3.9 116 18-143 14-165 (360)
116 TIGR02440 FadJ fatty oxidation 75.7 5.7 0.00015 20.3 4.5 97 88-207 84-186 (732)
117 pfam08496 Peptidase_S49_N Pept 74.4 4.5 0.00011 20.9 3.7 45 44-91 98-150 (154)
118 KOG1283 consensus 72.2 8.3 0.00021 19.2 5.4 71 52-122 98-183 (414)
119 TIGR01930 AcCoA-C-Actrans acet 68.4 1.2 3.1E-05 24.5 -0.3 41 166-207 183-223 (447)
120 pfam06833 MdcE Malonate decarb 63.6 12 0.00031 18.2 7.1 138 42-206 29-186 (234)
121 TIGR02280 PaaB1 phenylacetate 61.9 2.3 5.9E-05 22.7 0.1 130 51-206 23-182 (259)
122 cd01834 SGNH_hydrolase_like_2 61.4 13 0.00034 17.9 5.6 67 42-111 2-72 (191)
123 KOG1679 consensus 54.4 7.5 0.00019 19.5 1.7 136 54-212 54-217 (291)
124 PRK09268 acetyl-CoA acetyltran 51.0 20 0.00051 16.8 4.3 39 166-205 182-220 (428)
125 cd07560 Peptidase_S41_CPP C-te 49.9 21 0.00053 16.7 5.9 70 33-105 40-111 (211)
126 TIGR01481 ccpA catabolite cont 49.0 13 0.00034 17.9 2.3 35 26-60 99-136 (332)
127 pfam08004 DUF1699 Protein of u 45.2 17 0.00045 17.2 2.4 52 141-194 73-124 (131)
128 KOG1389 consensus 44.2 21 0.00053 16.7 2.6 44 164-208 184-228 (435)
129 KOG0016 consensus 40.7 12 0.0003 18.3 0.9 97 92-207 99-195 (266)
130 PRK07189 malonate decarboxylas 39.3 30 0.00077 15.7 6.6 132 46-180 79-250 (302)
131 TIGR00954 3a01203 Peroxysomal 34.4 7.2 0.00018 19.6 -1.0 42 126-169 297-339 (788)
132 PRK09050 beta-ketoadipyl CoA t 33.8 37 0.00094 15.1 4.7 35 166-201 167-201 (401)
133 PRK06025 acetyl-CoA acetyltran 33.7 37 0.00094 15.1 4.1 40 166-206 162-202 (417)
134 pfam02803 Thiolase_C Thiolase, 32.8 38 0.00098 15.0 5.0 79 21-118 30-121 (123)
135 TIGR02362 dhaK1b probable dihy 32.8 38 0.00098 15.0 3.9 45 54-98 232-278 (328)
136 PRK08170 acetyl-CoA acetyltran 31.0 41 0.001 14.8 4.3 42 164-206 179-220 (426)
137 TIGR02939 RpoE_Sigma70 RNA pol 30.8 30 0.00077 15.7 1.7 151 24-200 13-188 (192)
138 TIGR02013 rpoB DNA-directed RN 29.9 14 0.00036 17.8 -0.1 19 176-194 364-382 (1449)
139 PRK00046 murB UDP-N-acetylenol 28.4 34 0.00087 15.3 1.7 55 113-178 275-334 (348)
140 TIGR02427 protocat_pcaD 3-oxoa 26.8 33 0.00084 15.5 1.3 18 68-85 9-26 (256)
141 PRK07801 acetyl-CoA acetyltran 26.4 49 0.0013 14.3 4.3 35 166-201 161-195 (382)
142 COG4809 Archaeal ADP-dependent 26.2 20 0.00051 16.8 0.1 22 87-108 330-351 (466)
143 PRK07661 acetyl-CoA acetyltran 25.5 51 0.0013 14.2 4.1 39 166-205 144-183 (384)
144 pfam00117 GATase Glutamine ami 25.3 42 0.0011 14.8 1.7 33 78-110 45-81 (187)
145 cd01744 GATase1_CPSase Small c 25.2 52 0.0013 14.2 2.8 33 78-110 43-79 (178)
146 PRK06504 acetyl-CoA acetyltran 24.6 53 0.0014 14.1 4.1 38 166-204 159-197 (390)
147 KOG1455 consensus 24.5 50 0.0013 14.3 1.9 33 21-53 29-66 (313)
148 TIGR02915 PEP_resp_reg putativ 24.1 50 0.0013 14.3 1.8 127 31-169 96-268 (451)
149 pfam02873 MurB_C UDP-N-acetyle 23.8 47 0.0012 14.5 1.7 56 112-178 36-96 (103)
150 KOG0540 consensus 23.5 56 0.0014 14.0 8.3 86 48-138 362-461 (536)
151 pfam02730 AFOR_N Aldehyde ferr 23.4 42 0.0011 14.8 1.4 44 71-114 113-165 (203)
152 KOG0935 consensus 23.0 30 0.00078 15.7 0.6 32 37-68 9-40 (143)
153 PRK07851 acetyl-CoA acetyltran 22.4 59 0.0015 13.9 4.1 41 164-205 174-215 (405)
154 PRK06928 pyrroline-5-carboxyla 21.9 57 0.0014 14.0 1.8 52 41-104 63-114 (275)
155 TIGR02951 DMSO_dmsB dimethylsu 21.7 30 0.00076 15.7 0.3 13 192-204 145-157 (162)
156 pfam07745 Glyco_hydro_53 Glyco 21.7 36 0.00092 15.2 0.7 25 117-141 154-178 (332)
157 cd02776 MopB_CT_Nitrate-R-NarG 21.3 44 0.0011 14.7 1.1 47 126-203 2-48 (141)
158 PRK08234 consensus 21.1 63 0.0016 13.7 4.3 39 165-204 167-206 (400)
159 TIGR00411 redox_disulf_1 redox 20.9 44 0.0011 14.7 1.0 15 187-201 38-52 (82)
160 PRK13903 murB UDP-N-acetylenol 20.9 46 0.0012 14.5 1.1 57 111-178 284-349 (359)
161 PRK09052 acetyl-CoA acetyltran 20.8 63 0.0016 13.7 3.9 39 166-205 158-197 (399)
162 PRK06689 consensus 20.7 64 0.0016 13.6 3.9 40 165-205 159-199 (391)
163 PRK13905 murB UDP-N-acetylenol 20.6 64 0.0016 13.6 1.9 56 112-178 229-289 (298)
164 pfam06972 DUF1296 Protein of u 20.3 65 0.0017 13.6 3.6 26 172-198 15-41 (60)
165 PRK05670 anthranilate synthase 20.2 65 0.0017 13.6 2.7 33 78-110 47-82 (192)
No 1
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=0 Score=483.90 Aligned_cols=197 Identities=69% Similarity=1.118 Sum_probs=194.7
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24575797665998401220034514677998783189899999999999741157697699993687614678999999
Q gi|254780272|r 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95 (216)
Q Consensus 16 ~~~~p~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~ 95 (216)
++++|.++|+|++|++++|+|++||++|||||+|+||+++|++|++||+||+++||+|||+||||||||+|++|++|||+
T Consensus 1 ~~~~p~~~~~~~~~~~~~Di~~~L~~~Riifl~~~i~~~~a~~iia~llyL~~~~~~kpI~lyINSpGG~v~~glaIyD~ 80 (197)
T PRK00277 1 MALVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPTKDIYLYINSPGGSVTAGMAIYDT 80 (197)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99888799875898501138789761788998981078999999999998646196999899997998668789999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86448734899831556652000024677714554415664412566665554128999999999999999999987199
Q gi|254780272|r 96 MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175 (216)
Q Consensus 96 i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~ 175 (216)
|+++++||+|+|.|+|||||++||++|+||+|+++|||++|||||+++++|+++|++++++|++++++.+.++|+++||+
T Consensus 81 m~~~~~~V~Tv~~G~aaS~aslIl~aG~kgkR~~~pns~iMiHqp~~g~~G~a~di~~~a~el~~~~~~i~~iya~~Tg~ 160 (197)
T PRK00277 81 MQFIKPDVSTICMGQAASMGAFLLAAGTKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKIKKRLNEILAEHTGQ 160 (197)
T ss_pred HHHCCCCEEEEEEEEECCCCCHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97179973999874600210257760786634226044666314654667779999999999999999999999998793
Q ss_pred CHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 9899999724585888899997588644604542251
Q gi|254780272|r 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 176 ~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+.++|.++++||+||+|+||++|||||+|+++|.|++
T Consensus 161 ~~~~i~~~~~rd~~msa~EA~~yGliD~Il~~~~~l~ 197 (197)
T PRK00277 161 SLEKIEKDTDRDNFMSAEEAKEYGLIDKVITKRKELE 197 (197)
T ss_pred CHHHHHHHCCCCEECCHHHHHHHCCCCEEECCHHHCC
T ss_conf 9999998624780246999998099978814132149
No 2
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=0 Score=485.04 Aligned_cols=195 Identities=48% Similarity=0.833 Sum_probs=192.1
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 57579766599840122003451467799878318989999999999974115769769999368761467899999986
Q gi|254780272|r 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97 (216)
Q Consensus 18 ~~p~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~ 97 (216)
++|+++|++++|++++|+||+||++|||||+|+||+++|++|++||+||+++|++|||+||||||||+|++|++|||+|+
T Consensus 8 ~~p~~~~~~~~~~~~~diy~~L~~~Riifl~~~i~~~~a~~iia~ll~L~~~~~~kpI~lyINSpGG~v~~glaIyD~m~ 87 (204)
T PRK12553 8 ILPSFIERTSYGVKESNPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRPITMYINSPGGSVTSGDAIYDTIQ 87 (204)
T ss_pred CCCEEEEECCCCCEEHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 07779997699862004888986178899888338899999999999974739599989999799855768999999999
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44873489983155665200002467771455441566441256--6665554128999999999999999999987199
Q gi|254780272|r 98 FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS--GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175 (216)
Q Consensus 98 ~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps--~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~ 175 (216)
++++||+|+|.|+|||||++||++|+||+|+++|||++|||||+ ++++|+++|++++++|++++++.+.++|+++||+
T Consensus 88 ~~~~~V~Ti~~G~aaS~aslil~aG~kgkR~a~pns~iMiHqP~~~gg~~G~a~di~i~a~ei~~~~~~i~~iya~~Tg~ 167 (204)
T PRK12553 88 FVRPDVQTVGTGQAASAGAVLLAAGTPGKRFALPNTRFLIHQPSLGGGIQGQASDLEIQAREILRMRERLERTLAEATGQ 167 (204)
T ss_pred HCCCCEEEEEEEEHHHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56998499997475556889996177466463688746773765347865557689999999999999999999988697
Q ss_pred CHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 9899999724585888899997588644604542251
Q gi|254780272|r 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 176 ~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+.++|+++++||+||+|+||++|||||+|+++++|++
T Consensus 168 ~~e~i~~~~~rd~~msa~EA~eyGliD~Ii~~~~d~~ 204 (204)
T PRK12553 168 PREKIRKDTDRDKWLTAEEAKDYGLVDQILTSRKDLA 204 (204)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCHHHCC
T ss_conf 9999998724785157999998199978716322139
No 3
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=0 Score=480.11 Aligned_cols=194 Identities=51% Similarity=0.849 Sum_probs=190.9
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 57579766599840122003451467799878318989999999999974115769769999368761467899999986
Q gi|254780272|r 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQ 97 (216)
Q Consensus 18 ~~p~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~ 97 (216)
++|.|+|++++|++++|+||+||++|||||+|+||+++|+++++||+||+++|++|||+||||||||+|++|++|||+|+
T Consensus 1 ~~p~~~~~~~~g~~~~Di~~~L~~~Riifl~~~i~~~~a~~ii~~ll~L~~e~~~k~I~lyINSpGG~v~~glaIyD~m~ 80 (196)
T PRK12551 1 MIPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQ 80 (196)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98869987799850132777876278899898127899999999999860729799979999799866655699999996
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 44873489983155665200002467771455441566441256666555412899999999999999999998719998
Q gi|254780272|r 98 FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177 (216)
Q Consensus 98 ~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~ 177 (216)
++++||+|+|.|.|||||++||++|+||+|+++|||++|||||+++++|+++|++++++|++++++.+.++|+++||+|.
T Consensus 81 ~~~~~V~Ti~~G~aaS~as~il~aG~kgkR~~~pns~iMIHqp~~~~~G~a~di~~~a~el~~~~~~i~~i~a~~Tg~~~ 160 (196)
T PRK12551 81 HVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPL 160 (196)
T ss_pred HCCCCEEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 26999799996240225678997488886012656024770567675675879999999999999999999999879599
Q ss_pred HHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 9999972458588889999758864460454225
Q gi|254780272|r 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 178 e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
++|.++++||+||+|+||++|||||+|+++|...
T Consensus 161 ~~I~~~~~rd~~msa~EA~~yGliD~Il~~r~v~ 194 (196)
T PRK12551 161 ERIQEDTDRDFFMSPSEAVEYGLIDLVIDKRPVK 194 (196)
T ss_pred HHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 9999873578606799999829987860789877
No 4
>KOG0840 consensus
Probab=100.00 E-value=0 Score=478.50 Aligned_cols=197 Identities=58% Similarity=0.945 Sum_probs=188.9
Q ss_pred HCCCCC-EEEEECCCC-CCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 424575-797665998-401220034514677998783189899999999999741157697699993687614678999
Q gi|254780272|r 15 FLGLVP-MVVEQTNRG-ERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92 (216)
Q Consensus 15 ~~~~~p-~~~e~~~~~-~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaI 92 (216)
...++| ..+++..+| ++++||||+|||+|||||+++||+++|+.|++|||||+++|++|||+||||||||++++|+||
T Consensus 63 ~~~~~p~~~~~~~~rG~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAI 142 (275)
T KOG0840 63 APILVPRFPIESPGRGRERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAI 142 (275)
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 55569864021245688886328999987342641885768999999999998632388887689984899733102568
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986448734899831556652000024677714554415664412566665554128999999999999999999987
Q gi|254780272|r 93 YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172 (216)
Q Consensus 93 yD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~ 172 (216)
||+|+++++||.|+|+|+|+|||++||++|+||+|+++||||+|||||+++++|++.|+.++++|+.+.++.++++|++|
T Consensus 143 YDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~ 222 (275)
T KOG0840 143 YDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKH 222 (275)
T ss_pred HHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98887637971122055677688899866887640006775057865677767661379998999999999999999976
Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 199989999972458588889999758864460454225
Q gi|254780272|r 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 173 Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
||||.|+|.+||+||.||+|+||++|||||+|+++.-+.
T Consensus 223 Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~~ 261 (275)
T KOG0840 223 TGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPET 261 (275)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHCCCCCC
T ss_conf 399699997540323027999998816334553288312
No 5
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=0 Score=470.72 Aligned_cols=196 Identities=39% Similarity=0.740 Sum_probs=188.5
Q ss_pred CCC-CCEEEEECCCCC--CCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 245-757976659984--01220034514677998783189899999999999741157697699993687614678999
Q gi|254780272|r 16 LGL-VPMVVEQTNRGE--RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAI 92 (216)
Q Consensus 16 ~~~-~p~~~e~~~~~~--~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaI 92 (216)
||+ +|.|+++.|..+ +|.|+||+||++|||||+|+||+++|+.|++|||||+++|++|||+||||||||+|++|++|
T Consensus 1 Mpig~p~v~~~~~~~~~~~w~Di~~~L~~~Riifl~~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~~glaI 80 (201)
T CHL00028 1 MPIGVPKVPFRLPGEEDASWVDLYNRLYRERLLFLGQELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGIAI 80 (201)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 99888743456899876614549788863788998980178999999999999726497999899998998548689999
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999864487348998315566520000246777145544156644125666-6555412899999999999999999998
Q gi|254780272|r 93 YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG-FSGQASDIERHAQDIVKIKRRLNEIYVK 171 (216)
Q Consensus 93 yD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~-~~G~~~di~~~a~el~~~~~~l~~i~a~ 171 (216)
||+|+++++||+|+|.|+|||||++||+||+||+|+++|||++|||||+++ .+|+++|++++++|+.++++.+.++|++
T Consensus 81 yD~m~~~~~~V~Ti~~G~AaS~aslilaaG~kgkR~~~pns~iMIHqp~~g~~~G~a~di~~~a~el~~~~~~i~~iya~ 160 (201)
T CHL00028 81 YDTMQFVKPDVHTICLGLAASMGSFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETLTRVYVQ 160 (201)
T ss_pred HHHHHHCCCCEEEEEEEHHCCHHHHHHHCCCCCCEEECCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998559995899760010536788614887635626585561244546767897899999999999999999999998
Q ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 7199989999972458588889999758864460454225
Q gi|254780272|r 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 172 ~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
+||++.++|+++++||+||||+||++|||||+|++++.|.
T Consensus 161 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~~~~~ 200 (201)
T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVENLEE 200 (201)
T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCCCCCC
T ss_conf 8795999999871578426799999819988882578666
No 6
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=0 Score=471.82 Aligned_cols=183 Identities=45% Similarity=0.727 Sum_probs=176.0
Q ss_pred CCCHHHHHHCCCEEEECCCCCH----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCC---------CCHHHHHHH
Q ss_conf 1220034514677998783189----------899999999999741157697699993687---------614678999
Q gi|254780272|r 32 SYDIYSRLLKERIVFVTGQIED----------HMATLICAQLLFLEAENPQKEISLYINSPG---------GVVTAGMAI 92 (216)
Q Consensus 32 ~~Di~s~L~~~Riifl~g~I~~----------~~a~~iia~Ll~L~~~~~~k~I~l~INSpG---------G~v~~glaI 92 (216)
.-|||||||++|||||++||++ ++||.|+||||||+++|++|||+||||||| |+|++|+||
T Consensus 20 p~Di~srLl~eRIiflg~pi~~~d~~~~~~~~~vanliiAqLL~L~~ed~~k~I~lYINSpGgs~~~G~~~G~vt~~lAI 99 (222)
T PRK12552 20 PPDLPSLLLKERIVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAI 99 (222)
T ss_pred CCCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 96787887515489867865642001101207899999999998514389999799983899765567643432306789
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986448734899831556652000024677714554415664412566665554128999999999999999999987
Q gi|254780272|r 93 YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172 (216)
Q Consensus 93 yD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~ 172 (216)
||+||++++||+|+|+|+|+|||++||++|+||||+++||||+|||||++|++|+++|++++++|+.+++++++++|++|
T Consensus 100 yDtMq~Ik~~V~Tic~G~AaSmgalLLaaG~kGkR~alPnsriMiHQP~gg~~GqAsDI~i~a~Eil~~r~~l~~ila~~ 179 (222)
T PRK12552 100 CDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHASIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRN 179 (222)
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89985159985788527877099999863888772126871132238776777779999999999999999999999998
Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 199989999972458588889999758864460454225101
Q gi|254780272|r 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214 (216)
Q Consensus 173 Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~~ 214 (216)
|||+.++|++|++||+||||+||++|||||+|+++|++++..
T Consensus 180 TGq~~e~I~~d~~RD~~msA~EA~eYGLID~Il~~r~~~p~~ 221 (222)
T PRK12552 180 TGQTVEKLSKDSDRMFYLTPQEAKEYGLIDRVLESRKDLPAP 221 (222)
T ss_pred HCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 796999999871877567899999809876872268879999
No 7
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=464.57 Aligned_cols=197 Identities=72% Similarity=1.108 Sum_probs=192.9
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 45757976659984012200345146779987831898999999999997411576976999936876146789999998
Q gi|254780272|r 17 GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTM 96 (216)
Q Consensus 17 ~~~p~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i 96 (216)
.++|.++|++.++++++|+|++|+++|+|||+|+|++.+++.+++||++|++++|+|||+||||||||+|++|++|||+|
T Consensus 2 ~~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm 81 (200)
T COG0740 2 ALVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTM 81 (200)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 98765558556798700199985223579996422507788899999999833998986999968996610569999999
Q ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 64487348998315566520000246777145544156644125666655541289999999999999999999871999
Q gi|254780272|r 97 QFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKT 176 (216)
Q Consensus 97 ~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~ 176 (216)
+++|+||+|+|+|+|||||++|++||+||+|+++|||++|||||++|++|+++|++++|+|+.+++.++.++|+++||++
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~ 161 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQT 161 (200)
T ss_pred HHCCCCEEEEEECHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 85599869997467876899999658878713678643898668756766787999999999999999999999880998
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 8999997245858888999975886446045422510
Q gi|254780272|r 177 YEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 177 ~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.++|+++++||+||+|+||++|||||+|++++.....
T Consensus 162 ~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~~~ 198 (200)
T COG0740 162 LEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAAAK 198 (200)
T ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEECCCCCCCCC
T ss_conf 8999986123445799999974885532133321223
No 8
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=100.00 E-value=0 Score=413.35 Aligned_cols=181 Identities=66% Similarity=1.071 Sum_probs=177.9
Q ss_pred CCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98401220034514677998783189899999999999741157697699993687614678999999864487348998
Q gi|254780272|r 28 RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC 107 (216)
Q Consensus 28 ~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~ 107 (216)
+++.|+|+|++||++|+|||+|+|+++++++++++|+||+++++++||+||||||||+|++|++|||+|+++++||+|+|
T Consensus 2 ~~~~~~d~~~~l~~~rii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~~~V~Ti~ 81 (182)
T pfam00574 2 GGERWYDIYSRLLRERIIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTIC 81 (182)
T ss_pred CCCEEEEHHHHHHCCCEEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 97565418778762878998984368999999999999856296999899998999678999999999984799848999
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 31556652000024677714554415664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
.|.|||||++|+++|++|+|+++|||++|+|||+++++|+++|++.++++++++++.+.++|+++||++.++|.++|+||
T Consensus 82 ~G~aaS~aslI~~aG~~g~R~~~p~s~~MiHq~~~~~~G~~~di~~~~~~l~~~~~~i~~~ya~~tg~~~~~i~~~~~~d 161 (182)
T pfam00574 82 LGLAASMGSFLLAAGTKGKRFALPNARIMIHQPLGGAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKIEKDLDRD 161 (182)
T ss_pred EEEEECCCCCHHHCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 20361455320102677744456570102563654666489999999999999999999999988694999999985078
Q ss_pred CCCCHHHHHHCCCCCEEECCC
Q ss_conf 588889999758864460454
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~ 208 (216)
+||+|+||++|||||+|++++
T Consensus 162 ~~lta~EA~~~GliD~Ii~~~ 182 (182)
T pfam00574 162 TFMSAEEAKEYGLIDEVIESR 182 (182)
T ss_pred CCCCHHHHHHCCCCCEECCCC
T ss_conf 324699999839986850579
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP; InterPro: IPR001907 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin . It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP , although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0008462 endopeptidase Clp activity, 0006508 proteolysis.
Probab=100.00 E-value=0 Score=399.35 Aligned_cols=192 Identities=63% Similarity=1.040 Sum_probs=188.8
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24575797665998401220034514677998783189899999999999741157697699993687614678999999
Q gi|254780272|r 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDT 95 (216)
Q Consensus 16 ~~~~p~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~ 95 (216)
+.++|.++|++.+++|++|+||||+++|+|||+++|+|..|+.|++|||||++|+++|+|.||||||||++.+|++|||+
T Consensus 1 ~~~~P~v~e~~~~~~r~~diysrll~~r~~~l~~~~~d~~a~~~vaqllfl~~e~~~k~i~ly~nsPGG~~~aG~~iydt 80 (192)
T TIGR00493 1 MSLIPTVIEQTGRGERAFDIYSRLLKERIIFLSGEVEDEVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDT 80 (192)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHH
T ss_conf 97454001125665404788999987555332020013578899999887513687551588983688500144688877
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86448734899831556652000024677714554415664412566665554128999999999999999999987199
Q gi|254780272|r 96 MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGK 175 (216)
Q Consensus 96 i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~ 175 (216)
|++++|+|.|+|+|.|+|||+++|++|.+|||.++|++++|||||+||..|+++|++++++++.+++..+.+.++.++|+
T Consensus 81 m~~i~P~v~t~C~G~aasmGafll~~G~~Gkr~~l~~~~~mihqPlGG~~Gqa~~i~i~a~~il~~~~~~~~~l~~~~G~ 160 (192)
T TIGR00493 81 MQFIKPDVSTICIGQAASMGAFLLAAGAKGKRAALPNSRIMIHQPLGGAQGQASDIEIQAKEILKLKKLLNEILAEHTGQ 160 (192)
T ss_pred HHHHCCCHHEEEHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87516322000010166677898743765310002434057864778866540134566899999999999999874073
Q ss_pred CHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 98999997245858888999975886446045
Q gi|254780272|r 176 TYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 176 ~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
+.|++.+|++||.|++++||.+|||||+|+..
T Consensus 161 ~~e~~~~d~~rd~f~~a~~a~~yGl~d~~l~~ 192 (192)
T TIGR00493 161 SLEKIEKDTERDFFMSAEEAKEYGLIDKVLTR 192 (192)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHCCHHHHHHCC
T ss_conf 16788765422221022556530307888419
No 10
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=0 Score=387.02 Aligned_cols=162 Identities=49% Similarity=0.763 Sum_probs=161.0
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 77998783189899999999999741157697699993687614678999999864487348998315566520000246
Q gi|254780272|r 43 RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAG 122 (216)
Q Consensus 43 Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG 122 (216)
|+|||+|+||+++|++|++||+||+++|++|||+||||||||+|++|++|||+|+++++||+|+|.|.|+|||++|+++|
T Consensus 1 Rii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~~~v~tv~~G~aaS~as~i~~aG 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCC
T ss_conf 98998880178999999999999726297999899997998579999999999984799989996304651658999737
Q ss_pred CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCC
Q ss_conf 77714554415664412566665554128999999999999999999987199989999972458588889999758864
Q gi|254780272|r 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD 202 (216)
Q Consensus 123 ~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD 202 (216)
++|+|+++|||++|+|||+++++|+++|++.++++++++++.+.++|+++||++.++|+++++||+||+|+||++|||||
T Consensus 81 ~~g~R~~~~~s~~MiHq~~~g~~G~~~di~~~~~~l~~~~~~i~~i~a~~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 88881767668998806345657799999999999999999999999998890999999861488236699999859988
Q ss_pred EE
Q ss_conf 46
Q gi|254780272|r 203 KV 204 (216)
Q Consensus 203 ~I 204 (216)
+|
T Consensus 161 ~I 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred CC
T ss_conf 09
No 11
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.4e-45 Score=307.59 Aligned_cols=156 Identities=31% Similarity=0.481 Sum_probs=148.7
Q ss_pred EEEECCCCCH---HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 7998783189---8999999999997411576976999936876146789999998644873489983155665200002
Q gi|254780272|r 44 IVFVTGQIED---HMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLS 120 (216)
Q Consensus 44 iifl~g~I~~---~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~ 120 (216)
.||+.|+|.+ ..++.+. ..|++.++++||+||||||||+|++|++|||+|+.+++||+|+|.|.|||||++|++
T Consensus 2 ~i~~~g~i~~~~~~~~~~~~---~~L~~~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~~~~V~t~~~G~aaS~g~~I~~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFK---DALDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEEEECCCCCCCHHHHH---HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHH
T ss_conf 69999556377683999999---999827999997999989985899999999999867959899992707788999985
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCC
Q ss_conf 46777145544156644125666655541289999999999999999999871999899999724585888899997588
Q gi|254780272|r 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200 (216)
Q Consensus 121 aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGl 200 (216)
||+ +|++.|||++|+|||+++++|+..|++.++++++++++.+.++|+++||++.++|.+++++|+||||+||++|||
T Consensus 79 ag~--kr~~~~~s~imiH~~s~~~~G~~~d~~~~~~~~~~~~~~~~~~~~~~tg~~~~~i~~~~~~d~w~sa~EA~e~Gl 156 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred CCC--EEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECHHHHHHCCC
T ss_conf 498--599845787541686656787889999999999999999999999881999999999865990843999998489
Q ss_pred CCEE
Q ss_conf 6446
Q gi|254780272|r 201 VDKV 204 (216)
Q Consensus 201 iD~I 204 (216)
||+|
T Consensus 157 iD~I 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCCC
T ss_conf 8729
No 12
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=100.00 E-value=2.5e-43 Score=294.08 Aligned_cols=159 Identities=35% Similarity=0.591 Sum_probs=152.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 79987831898999999999997411576976999936876146789999998644873489983155665200002467
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~ 123 (216)
||||+|+|++.+|+.|++||++|+++++.|||+||||||||+|++|++|||+|+.++.||+|+|.|.|+|+|++|+++|+
T Consensus 1 ii~l~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~~~~~~v~t~~~g~aaS~g~~i~~a~~ 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHCCC
T ss_conf 98966555789999999999999838999978999989998889999999999961999999668737760456651588
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 771455441566441256666555--412899999999999999999998719998999997245858888999975886
Q gi|254780272|r 124 KGMRFALPNARILLHQPSGGFSGQ--ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201 (216)
Q Consensus 124 ~g~R~~~pns~iMiHqps~~~~G~--~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli 201 (216)
+|++.|||++|+|+|.+++.|. ..+.+...++++++++.+.++++++||++.+++.+++.||+||+|+||++||||
T Consensus 81 --~~~~~p~s~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~lta~eA~e~Gli 158 (161)
T cd00394 81 --KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred --CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEECHHHHHHCCCC
T ss_conf --533088740455256214788899999999999999999999999997539999999998507958849999986996
Q ss_pred CEE
Q ss_conf 446
Q gi|254780272|r 202 DKV 204 (216)
Q Consensus 202 D~I 204 (216)
|+|
T Consensus 159 D~I 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CCC
T ss_conf 409
No 13
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.89 E-value=4.9e-22 Score=159.60 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=134.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 79987831898999999999997411576976999936876146789999998644873489983155665200002467
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGE 123 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~ 123 (216)
+|-+.|+|+..++..+-..|---+ +++.+.|-|.||||||.+.+++.|++.|+.++.||.+++-|.|+|+|++|.++++
T Consensus 3 vi~i~g~I~~~~~~~l~r~l~~A~-~~~a~~ivl~idTpGG~v~~~~~I~~~I~~~~~pvv~~V~~~AaSAG~~Ia~aad 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAK-EEGADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEECCEECHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC
T ss_conf 999735686889999999999999-6899789999979998689999999999848999999999920779999998467
Q ss_pred CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC-------------CC
Q ss_conf 77145544156644125666655541289999999999999999999871999899999724585-------------88
Q gi|254780272|r 124 KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH-------------IM 190 (216)
Q Consensus 124 ~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~-------------~l 190 (216)
++++.|+++++.|+|..+..+++.+-+.+. .++.. .+-+++..|+..+-.++..+++. ||
T Consensus 82 --~i~m~p~t~iG~a~Pv~~~g~~~~~~K~~s----~~~a~-~r~~Ae~~GRn~~~aeamV~~~~~v~~~~~~~g~~Ltl 154 (178)
T cd07021 82 --EIYMAPGATIGAAEPIPGDGNGAADEKVQS----YWRAK-MRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred --EEEECCCCCEECCCCCCCCCCCHHHHHHHH----HHHHH-HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf --004889985301542558886314678999----99999-99999983998999999975144442112334554435
Q ss_pred CHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 88999975886446045422510
Q gi|254780272|r 191 SASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
+++||+++|++|.|.+++.++-+
T Consensus 155 ta~EAl~~g~~d~ia~~~~~Ll~ 177 (178)
T cd07021 155 TADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CHHHHHHCCCCEEEECCHHHHHH
T ss_conf 89999973982788689999951
No 14
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.75 E-value=3.2e-17 Score=129.19 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=130.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCCCCCCCCC
Q ss_conf 79987831898999999999997411576976999936876146789999998644873489983---155665200002
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLLS 120 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~---G~aaS~aslIl~ 120 (216)
.|-+.|+|+..++..+-..|-.-+.. .-+-+-|.||||||.+.++..|.+.|..++.||.+++. +.|+|+|++|++
T Consensus 3 vi~i~g~I~~~~~~~l~r~l~~A~~~-~a~avvl~idTpGG~v~~~~~I~~~i~~s~vpvi~~V~p~G~~A~SAGa~I~~ 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEECCEECHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 99961467688999999999999868-99899999858960789999999999818999899987897607718999998
Q ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCC
Q ss_conf 46777145544156644125666655541289999999999999999999871999899999724585888899997588
Q gi|254780272|r 121 AGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200 (216)
Q Consensus 121 aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGl 200 (216)
+++ .-++.|.+.+.-++|-....+...+-....|.+..+. ...+-+|+.-|+..+-.++...++.+|+++||+++|+
T Consensus 82 a~~--~~~MaPgt~iGaA~PV~~~~~~~~~~~~~~K~~n~~~-a~~rs~Ae~rGRn~~~Ae~~V~e~~~lta~eAl~~gv 158 (187)
T cd07020 82 AAH--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred HCC--HHHCCCCCCEECCCCEECCCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCC
T ss_conf 360--7547898750014412068988760578999999999-9999999983999899999876147668999997698
Q ss_pred CCEEECCCCCCCCC
Q ss_conf 64460454225101
Q gi|254780272|r 201 VDKVLMSRIDIEEK 214 (216)
Q Consensus 201 iD~Ii~~~~e~~~~ 214 (216)
||.|..+..|+-++
T Consensus 159 iD~ia~~~~eLL~~ 172 (187)
T cd07020 159 IDLIAADLNELLKK 172 (187)
T ss_pred CEEEECCHHHHHHH
T ss_conf 17884999999987
No 15
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.63 E-value=1.1e-14 Score=113.14 Aligned_cols=163 Identities=22% Similarity=0.240 Sum_probs=121.0
Q ss_pred EEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCC
Q ss_conf 799878318---989999999999974115769769999368761467899999986448---73489983155665200
Q gi|254780272|r 44 IVFVTGQIE---DHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAASMGSL 117 (216)
Q Consensus 44 iifl~g~I~---~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~---~~V~Ti~~G~aaS~asl 117 (216)
+|.+.|+|+ ....+.++.+|.-....+.-|-|.|.||||||++.+.-.|+++|+..+ .||.+++-+.|+|.|-.
T Consensus 4 vi~~~G~i~~~~~~~~~~i~~~l~~A~~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~~~KpV~a~~~~~aaSg~Y~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCHHHH
T ss_conf 99988788899986999999999999508997489999748996299999999999987514985999977711133456
Q ss_pred CCCCCCCCCEEECCCHHH------HHHHHHHHH------------HH------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 002467771455441566------441256666------------55------------541289999999999999999
Q gi|254780272|r 118 LLSAGEKGMRFALPNARI------LLHQPSGGF------------SG------------QASDIERHAQDIVKIKRRLNE 167 (216)
Q Consensus 118 Il~aG~~g~R~~~pns~i------MiHqps~~~------------~G------------~~~di~~~a~el~~~~~~l~~ 167 (216)
|.++++ +-++.|.|.+ +.|.-..+. .| +..+.+..-..++.+.+.+.+
T Consensus 84 lAs~ad--~I~a~p~s~vGSIGv~~~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~~~~s~e~~~~~~~~ld~~~~~F~~ 161 (208)
T cd07023 84 IAAAAD--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVD 161 (208)
T ss_pred HHHCCC--EEEECCCCEECCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 551287--799778763332003663268899999769706999525623345777789999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 999871999899999724585888899997588644604542
Q gi|254780272|r 168 IYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 168 i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
..+++-+.+.+++.+..+... ++++||+++||||+|.....
T Consensus 162 ~Va~~R~~~~~~v~~~~~g~v-~~~~~A~~~GLiD~ig~~~e 202 (208)
T cd07023 162 VVAEGRGMSGERLDKLADGRV-WTGRQALELGLVDELGGLDD 202 (208)
T ss_pred HHHHHCCCCHHHHHHHHCCCE-EEHHHHHHCCCCCCCCCHHH
T ss_conf 999866999899999857986-70999998699753399999
No 16
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.59 E-value=2.4e-14 Score=111.04 Aligned_cols=144 Identities=24% Similarity=0.199 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 999999999997411576976999936876146789999998644---87348998315566520000246777145544
Q gi|254780272|r 55 MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFI---KPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131 (216)
Q Consensus 55 ~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i---~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~p 131 (216)
.++.++.+|.-....+.-|-|-|.||||||++.+...|++.++.. +.||+.++-+.++|.|-.|.++++ +-++.|
T Consensus 23 ~~~~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~KPV~a~~~~~aASg~Y~iA~aad--~I~a~p 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANP 100 (177)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCC--EEEECC
T ss_conf 699999999999519996289999618981889999999999998865998999977856205778761278--899869
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 1566441256666555412899999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 132 ns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
.+.+= |-|+.+....+ -+.++.+.+.+.+..+++-+.+.+++.+.+.+-..++++||++.||||+|-.-
T Consensus 101 ~s~vG----SIGV~~~~~~~---q~~vd~~~~~Fv~~Va~~R~~~~~~~~~~~~~G~v~~g~~A~~~GLiD~iG~~ 169 (177)
T cd07014 101 STLVG----SIGIFGVQLAD---QLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred CCEEE----EEEEEEEHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCH
T ss_conf 97277----62698666899---99999999999999997479996786876068677889999986997656999
No 17
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.52 E-value=3.7e-13 Score=103.54 Aligned_cols=149 Identities=24% Similarity=0.281 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 9999999999974115769769999368761467899999986448--73489983155665200002467771455441
Q gi|254780272|r 55 MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132 (216)
Q Consensus 55 ~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~--~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pn 132 (216)
..+.|+.+|.-....+.-|-|.|.||||||++.+...|+++++..+ .||...+-|.|+|.|-.|.++++ +-++.|.
T Consensus 26 ~~~~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~~KPVva~~~~~~aSggY~iAsaad--~I~a~~~ 103 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTPT 103 (214)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCC--CEEECCC
T ss_conf 89999999999950999758999997989768999999999998608998999988811568999987257--0587776
Q ss_pred HHH------HHHHHHHH------------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 566------44125666------------655541------------289999999999999999999871999899999
Q gi|254780272|r 133 ARI------LLHQPSGG------------FSGQAS------------DIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 133 s~i------MiHqps~~------------~~G~~~------------di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
+.+ +.+.-... ..|+.. +.+.--+.++.+.+.+.+..+++-+.+.++++.
T Consensus 104 s~vGSIGv~~~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~~~~s~e~~~~~q~~ld~~~~~F~~~Va~~R~~~~~~~~~ 183 (214)
T cd07022 104 AGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRA 183 (214)
T ss_pred CEEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 46876414886177688898679547874057633236875656889999999999999999999999857999778887
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 7245858888999975886446045
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
. ....+++++|+++||||+|-.-
T Consensus 184 ~--~G~v~~g~~A~~~GLVD~iG~~ 206 (214)
T cd07022 184 T--EGGVFRGQEAVAAGLADAVGTL 206 (214)
T ss_pred H--CCCEEEHHHHHHCCCCCCCCCH
T ss_conf 1--6989889999985997546999
No 18
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.51 E-value=2.9e-13 Score=104.20 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=125.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE---ECCCCCCCCCCCC
Q ss_conf 7998783189899999999999741157697699993687614678999999864487348998---3155665200002
Q gi|254780272|r 44 IVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFC---MGQAASMGSLLLS 120 (216)
Q Consensus 44 iifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~---~G~aaS~aslIl~ 120 (216)
+|-+.|+|+..++..+...|---+. +.-+-+-|.||+|||.+.+...|.+.|..++.||.+.+ -+.|+|+|++|+.
T Consensus 3 vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~vii~ldTPGG~~~a~~~I~~~i~~s~vPv~~yV~P~g~~A~SAGa~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9997267868899999999999997-799899999868962899999999999829999899994799626769999998
Q ss_pred CCCCCCEEECCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf 46777145544156644125666--6555412899999999999999999998719998999997245858888999975
Q gi|254780272|r 121 AGEKGMRFALPNARILLHQPSGG--FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198 (216)
Q Consensus 121 aG~~g~R~~~pns~iMiHqps~~--~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~ey 198 (216)
+++ .-++.|.+.+=--+|-.+ -.+..... .-|-+..+. ...+-+++.-|+..+-.++....+.-++++||+++
T Consensus 82 aa~--~~~MaPgt~iGaA~PV~~~g~~~~~~~~--~~K~~n~~~-a~~rs~Ae~rGRn~~~ae~~V~e~~slta~eAl~~ 156 (172)
T cd07015 82 GSH--LIAMAPGTSIGACRPILGYSQNGSIIEA--PPKITNYFI-AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY 156 (172)
T ss_pred HCC--HHEECCCCCCCCCCEEECCCCCCCCCCC--CHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHC
T ss_conf 554--3206799874357632068988886655--477899999-99999999859988999999874247599999976
Q ss_pred CCCCEEECCCCCCCCC
Q ss_conf 8864460454225101
Q gi|254780272|r 199 GVVDKVLMSRIDIEEK 214 (216)
Q Consensus 199 GliD~Ii~~~~e~~~~ 214 (216)
|+||-|..+..|+=+|
T Consensus 157 gviD~iA~~~~eLL~k 172 (172)
T cd07015 157 GVIEVVARDINELLKK 172 (172)
T ss_pred CCCEEEECCHHHHHHC
T ss_conf 9817885999999509
No 19
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.48 E-value=2.8e-13 Score=104.31 Aligned_cols=163 Identities=23% Similarity=0.231 Sum_probs=118.0
Q ss_pred EEEECCCCCHHH-------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEEEEECCCCCC
Q ss_conf 799878318989-------9999999999741157697699993687614678999999864487--3489983155665
Q gi|254780272|r 44 IVFVTGQIEDHM-------ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKP--PISTFCMGQAASM 114 (216)
Q Consensus 44 iifl~g~I~~~~-------a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~--~V~Ti~~G~aaS~ 114 (216)
+|.+.|.|.+.. ...+...|..+...++.|+|-|.||||||+|.+...|++.++.++. ||+..+-+.|||-
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 99745465348776344667779999999850899873899998949846899999999998753298999988732028
Q ss_pred CCCCCCCCCCCCEEECCCHHH------HHHHHHHHH------------HHHHHH------------HHHHHHHHHHHHHH
Q ss_conf 200002467771455441566------441256666------------555412------------89999999999999
Q gi|254780272|r 115 GSLLLSAGEKGMRFALPNARI------LLHQPSGGF------------SGQASD------------IERHAQDIVKIKRR 164 (216)
Q Consensus 115 aslIl~aG~~g~R~~~pns~i------MiHqps~~~------------~G~~~d------------i~~~a~el~~~~~~ 164 (216)
|..|.++++ +.++.|+|.+ +.|...... .|...| .+.--++++...+.
T Consensus 143 GY~IA~aAd--~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~ 220 (317)
T COG0616 143 GYYIALAAD--KIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDE 220 (317)
T ss_pred HHHHHHCCC--EEEECCCCCCCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999984078--798779860213501774566899998659860344232421114533336989999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 999999871999899999724585888899997588644604542
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
+.+..++..+.+.+.+ ........+++++|++.||||++-+...
T Consensus 221 F~~~V~~~R~~~~~~~-~~~a~g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 221 FVDKVAEGRGLSDEAV-DKLATGRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHHHHCCCCCCCHHH-HHHHCCCEECHHHHCCCCCHHHHCCHHH
T ss_conf 9999972679970156-7873576864666242444276467889
No 20
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.44 E-value=1.2e-12 Score=100.32 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 999999999974115769769999368761467899999986448---73489983155665200002467771455441
Q gi|254780272|r 56 ATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAASMGSLLLSAGEKGMRFALPN 132 (216)
Q Consensus 56 a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~---~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pn 132 (216)
+..++.+|.-....+.-|-|-|.||||||++.+.-.|++.++.++ .||...+-|.|+|.|-.|.++++ +-|+.|+
T Consensus 23 ~~~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~~~~~~~KPVva~~~~~aaSggY~iAsaad--~I~a~p~ 100 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN--YIVANPS 100 (211)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCC--EEEECCC
T ss_conf 99999999999528997389999769697689999999999998646997999977844348899985589--8998488
Q ss_pred HHH------HHHHHHHHH------------HHHHHHH----------H-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 566------441256666------------5554128----------9-9999999999999999998719998999997
Q gi|254780272|r 133 ARI------LLHQPSGGF------------SGQASDI----------E-RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 133 s~i------MiHqps~~~------------~G~~~di----------~-~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
+.+ +.|.-..+. .|+..++ + .--+.++.+.+.+.+..+++-+.+.+++++.
T Consensus 101 s~vGSIGV~~~~~~~~~~~~k~Gi~~~~i~~~~~~~~~~~~~lt~e~r~~~q~~vd~~~~~F~~~Va~~R~~~~~~v~~~ 180 (211)
T cd07019 101 TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKI 180 (211)
T ss_pred CCEEEEEEEEEECCHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 73565568998337677777468357899745666678889999999999999999999999999997679995783754
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCC
Q ss_conf 245858888999975886446045422
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRID 210 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~e 210 (216)
. .-..+++++|+++||||+|-....-
T Consensus 181 a-~G~v~~g~~A~~~GLiD~ig~~~~a 206 (211)
T cd07019 181 A-QGHVWTGQDAKANGLVDSLGDFDDA 206 (211)
T ss_pred C-CCCEEEHHHHHHCCCCCCCCCHHHH
T ss_conf 6-8557878999986996556999999
No 21
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.6e-10 Score=86.83 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=121.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE---CCCCCCCCCCC
Q ss_conf 779987831898999999999997411576976999936876146789999998644873489983---15566520000
Q gi|254780272|r 43 RIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCM---GQAASMGSLLL 119 (216)
Q Consensus 43 Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~---G~aaS~aslIl 119 (216)
..+.+.|+|+..+++.+...|-.-+.+ .-..+-+.+|+|||-+.+...|...+..++.||..++. +.|+|+|+.|+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCHHHHHH
T ss_conf 999925742777999999999999857-9847999960897267999999999875999779999489851104032798
Q ss_pred CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCC
Q ss_conf 24677714554415664412566665554128999999999999999999987199989999972458588889999758
Q gi|254780272|r 120 SAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG 199 (216)
Q Consensus 120 ~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyG 199 (216)
.+.+ .-+|.|.+.+=--+|-.+. |+..+-+. .+..+... ..-.|+.-|+..+--++...++.=++++||.++|
T Consensus 108 m~~h--iaaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~ay-~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATH--IAAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAVAY-IRSLAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HHCC--HHHHCCCCCCCCCCEECCC-CCCCCCHH---HHHHHHHH-HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCC
T ss_conf 8567--6551798743546502479-98855014---37899999-9999998399869999986421577866798559
Q ss_pred CCCEEECCCCCCC
Q ss_conf 8644604542251
Q gi|254780272|r 200 VVDKVLMSRIDIE 212 (216)
Q Consensus 200 liD~Ii~~~~e~~ 212 (216)
+||-|-....|+-
T Consensus 181 vid~iA~~~~ell 193 (436)
T COG1030 181 VIDLIARDLNELL 193 (436)
T ss_pred CCCCCCCCHHHHH
T ss_conf 4003558789999
No 22
>PRK10949 protease 4; Provisional
Probab=99.10 E-value=2.5e-09 Score=79.39 Aligned_cols=160 Identities=24% Similarity=0.299 Sum_probs=106.2
Q ss_pred EEEECCCCCHH-------HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCC
Q ss_conf 79987831898-------9999999999974115769769999368761467899999986448---7348998315566
Q gi|254780272|r 44 IVFVTGQIEDH-------MATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAAS 113 (216)
Q Consensus 44 iifl~g~I~~~-------~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~---~~V~Ti~~G~aaS 113 (216)
+|+..|+|.+. -+..++.+|.-....+.-|-|-|.|||||||+.+--.|...+...+ .||..---+.|||
T Consensus 330 VI~a~G~Iv~G~~~~g~ig~dt~~~~lr~a~~D~~VKAvVLRVnSPGGSa~ASE~I~~el~~lk~~gKPVVvSMG~vAAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99968768548887886655899999999730867228999985899866789999999999984499799997010156
Q ss_pred CCCCCCCCCCCCCEEECCCHHH-------HHH---HHH--HH------HHHHHHHH-----------HHHHHHHHHHHHH
Q ss_conf 5200002467771455441566-------441---256--66------65554128-----------9999999999999
Q gi|254780272|r 114 MGSLLLSAGEKGMRFALPNARI-------LLH---QPS--GG------FSGQASDI-----------ERHAQDIVKIKRR 164 (216)
Q Consensus 114 ~aslIl~aG~~g~R~~~pns~i-------MiH---qps--~~------~~G~~~di-----------~~~a~el~~~~~~ 164 (216)
=|-.|.++++ +=+|.|++.. ++- +.. .| ..|...++ +.--..+++.-++
T Consensus 410 GGYwIa~~Ad--~I~A~p~TITGSIGVfg~~p~~~~~l~~lGI~~D~V~t~~~a~~s~~~~l~~~~~~~~q~~i~~~Y~~ 487 (618)
T PRK10949 410 GGYWISTPAN--YIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKR 487 (618)
T ss_pred CCEEEECCCC--EEEECCCCEEEECEEEEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6258851687--69988986788640477610499999964952468854567778877799999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 999999871999899999724585888899997588644604
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~ 206 (216)
+....|+.-+++.+++.+ +.+-+-.++++|++.||||++-.
T Consensus 488 Fl~~Va~gR~mt~e~Vd~-iAqGRVWsG~~A~~~GLVD~LGg 528 (618)
T PRK10949 488 FITLVADARHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred HHHHHHHHCCCCHHHHHH-HCCCCEEEHHHHHHCCCCCCCCC
T ss_conf 999998657999899998-64883776999998689365499
No 23
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=99.07 E-value=1.8e-09 Score=80.33 Aligned_cols=159 Identities=22% Similarity=0.279 Sum_probs=113.5
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEEECCCCCCCCCCCCC
Q ss_conf 9878318989999999999974115769769999368761467899999986448----734899831556652000024
Q gi|254780272|r 46 FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK----PPISTFCMGQAASMGSLLLSA 121 (216)
Q Consensus 46 fl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~----~~V~Ti~~G~aaS~aslIl~a 121 (216)
-+.+++|+.....+...|--+...+.-|-|-|.||||||.|.+---||+.|+-++ -||....-+.|+|=|-+|.++
T Consensus 18 ~~~~~~Dg~~~~~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S~Eiy~~l~~~~k~~kkPVv~~~g~~aaSGGYYia~a 97 (224)
T TIGR00706 18 SILLFSDGVSPEDVLKKIKRIKDDKSIKALVLRIDSPGGTVVASEEIYEKLKKLKKEAKKPVVASMGGVAASGGYYIAMA 97 (224)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHC
T ss_conf 10125689975679999887740897006999863799975226899999986345308858998368322679999813
Q ss_pred CCCCCEEECCCHHH------HHHHHHH------HH------HHHHHHHHHH-----HHHHHHHH-------HHHHHHHHH
Q ss_conf 67771455441566------4412566------66------5554128999-----99999999-------999999998
Q gi|254780272|r 122 GEKGMRFALPNARI------LLHQPSG------GF------SGQASDIERH-----AQDIVKIK-------RRLNEIYVK 171 (216)
Q Consensus 122 G~~g~R~~~pns~i------MiHqps~------~~------~G~~~di~~~-----a~el~~~~-------~~l~~i~a~ 171 (216)
|+ +=+|.|.|.+ |-|.-.. |. .|..-||-.- -+|=.-++ +.+.+..++
T Consensus 98 a~--~I~A~~~t~tGSIGVIl~~~n~~~L~~k~GI~~~~iK~G~yKd~~~~~R~lt~eE~~~lQ~~v~~~Y~~F~~~V~~ 175 (224)
T TIGR00706 98 AD--EIVANPGTITGSIGVILQGANVEKLLEKLGIEFEAIKSGEYKDIGSPTRELTPEERKILQSLVNESYEQFVQVVAK 175 (224)
T ss_pred CC--EEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88--2463477420203755203579999986491565665166567898757762999999999888887578999998
Q ss_pred HCC--CCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 719--998999997245858888999975886446045
Q gi|254780272|r 172 NCG--KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 172 ~Tg--~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
.=+ ++.+++++.- --+-|++++|++.+|||++=+.
T Consensus 176 ~R~nkl~~~~vK~~A-dGRvf~GrqA~~l~LVD~lG~~ 212 (224)
T TIGR00706 176 GRNNKLSVEDVKKFA-DGRVFTGRQALKLRLVDKLGTL 212 (224)
T ss_pred HCCCCCCHHHHHHHH-CCCEECHHHHHHCCCEECCCCH
T ss_conf 416778978876520-6860104334311460012898
No 24
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.97 E-value=1.3e-08 Score=74.87 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=110.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCCC
Q ss_conf 99878318989999999999974115769769999368761467899999986448---734899831556652000024
Q gi|254780272|r 45 VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK---PPISTFCMGQAASMGSLLLSA 121 (216)
Q Consensus 45 ifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~---~~V~Ti~~G~aaS~aslIl~a 121 (216)
++..+.-..-.-.+++..|-.....+.-|-|.|.||||||++.....|.++++..+ .||..++-+ ++|.|-.|.++
T Consensus 20 ~~~~~~~~~~~l~~l~~~l~~A~~D~~ik~vvL~i~s~gg~~~~~~ei~~ai~~~k~~gKpVva~~~~-~~s~~Y~lAs~ 98 (222)
T cd07018 20 LLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASA 98 (222)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECC-CCCHHHHHHHH
T ss_conf 95499988405999999999983399963899966899976999999999999998609939999525-66166588752
Q ss_pred CCCCCEEECCCHHHHHHHHH------HHH------------HHH------------HHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 67771455441566441256------666------------555------------412--8999999999999999999
Q gi|254780272|r 122 GEKGMRFALPNARILLHQPS------GGF------------SGQ------------ASD--IERHAQDIVKIKRRLNEIY 169 (216)
Q Consensus 122 G~~g~R~~~pns~iMiHqps------~~~------------~G~------------~~d--i~~~a~el~~~~~~l~~i~ 169 (216)
++ +-++.|.+.+-..-.. .+. .|. .++ -+.....++.+.+.+.+..
T Consensus 99 ad--~I~a~p~~~vg~iGv~~~~~~~k~ll~klGi~~~~~~~G~yK~a~epf~~~~~s~e~re~~~~~l~~~~~~f~~~V 176 (222)
T cd07018 99 AD--EIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADV 176 (222)
T ss_pred CC--EEEECCCCEEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78--5577688768776437542127889998698069984245466768655566589999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 987199989999972458588889999758864460454225
Q gi|254780272|r 170 VKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 170 a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
+++-+.+.+++++..+.. .+++++|+++||||+|... .|.
T Consensus 177 a~~R~~~~~~~~~~~~~~-~~~~~~A~~~GLVD~lg~~-de~ 216 (222)
T cd07018 177 AASRGLSPDALEALIDLG-GDSAEEALEAGLVDGLAYR-DEL 216 (222)
T ss_pred HHHCCCCHHHHHHHHHCC-CCCHHHHHHCCCCCCCCCH-HHH
T ss_conf 964799989999998479-8729999986997507989-999
No 25
>pfam01972 SDH_sah Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.
Probab=98.93 E-value=4.7e-08 Score=71.34 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 78318989999999999974115769769999368761467899999986448734899831556652000024677714
Q gi|254780272|r 48 TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMR 127 (216)
Q Consensus 48 ~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R 127 (216)
...||-+-++.|...+ ....++.||.|.+++|||.|.++..|..+++..+.+|+.++=..|+|-|++|..|++ +-
T Consensus 70 ~ryI~ieDSE~VLRAI---r~Tp~d~PIDlIlHTPGGlvLAa~QIA~AL~~H~akvtV~VPHYAMSGGTlIALAAD--EI 144 (286)
T pfam01972 70 YKFITIEDSEEILRAI---RLTPKDMPIDLIIHTPGGLALAATQIAKALKEHKAKTTVIVPHYAMSGGTLIALAAD--EI 144 (286)
T ss_pred HHCCCHHHHHHHHHHH---HCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECC--CE
T ss_conf 4322623289999999---759999985799857961689999999999958997399950310567420321066--05
Q ss_pred EECCCHHHHHHHHHHHHHH--------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHH---
Q ss_conf 5544156644125666655--------------5412-----89999999999999999999871999-89999972---
Q gi|254780272|r 128 FALPNARILLHQPSGGFSG--------------QASD-----IERHAQDIVKIKRRLNEIYVKNCGKT-YEEVEKTL--- 184 (216)
Q Consensus 128 ~~~pns~iMiHqps~~~~G--------------~~~d-----i~~~a~el~~~~~~l~~i~a~~Tg~~-~e~i~~~~--- 184 (216)
.+-+||-+==-.|.-|-+- ...| ..+.-|-+.++++.+.+++..+.+.. .+++.+.+
T Consensus 145 vMd~nAVLGPvDPQlG~~PAaSIl~v~e~K~~~~idD~TLIlaDva~KAi~Qv~~~v~~LL~~k~~eeka~~ia~~L~~G 224 (286)
T pfam01972 145 IMDENAVLGPVDPQIGQYPAASILKAVEKKGPKKIDDQTLILADISKKAIKQMEEFVYNLLKDKYGEEKAKEIAKILTEG 224 (286)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 56776555887820268767999999974791314640012788899999999999999987438889999999998068
Q ss_pred --CCCCCCCHHHHHHCCCC
Q ss_conf --45858888999975886
Q gi|254780272|r 185 --DRDHIMSASEACDWGVV 201 (216)
Q Consensus 185 --~rD~~lsa~EA~eyGli 201 (216)
.+|+=++++||.+.|+-
T Consensus 225 ~wTHDyPit~e~ak~lGl~ 243 (286)
T pfam01972 225 RWTHDYPLTVEELKELGLE 243 (286)
T ss_pred CEECCCCCCHHHHHHCCCC
T ss_conf 4417888899999985996
No 26
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=98.57 E-value=1.2e-06 Score=62.37 Aligned_cols=159 Identities=28% Similarity=0.302 Sum_probs=111.6
Q ss_pred CEEEECCCCCH------H-HHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCHHHHHHHHHHH---HHC-CCCEEEEEEC-
Q ss_conf 77998783189------8-999999999997411576-976999936876146789999998---644-8734899831-
Q gi|254780272|r 43 RIVFVTGQIED------H-MATLICAQLLFLEAENPQ-KEISLYINSPGGVVTAGMAIYDTM---QFI-KPPISTFCMG- 109 (216)
Q Consensus 43 Riifl~g~I~~------~-~a~~iia~Ll~L~~~~~~-k~I~l~INSpGG~v~~glaIyD~i---~~i-~~~V~Ti~~G- 109 (216)
-|||+.|+|-+ . +..+-++.||=--..||+ |-|-|.||||||+++|.--|--.+ |.. |-|| .|-+|
T Consensus 323 aiv~~~G~I~~G~~t~~nG~ggD~~a~lLr~a~~D~~iKAvvLRinSPGGsv~Ase~IR~e~~~~~~~GkKPV-ivSMG~ 401 (614)
T TIGR00705 323 AIVYLEGSIVDGRDTEENGVGGDTVAALLRKARSDPDIKAVVLRINSPGGSVFASEIIRRELERLQARGKKPV-IVSMGA 401 (614)
T ss_pred EEEEEECCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCE-EEECCH
T ss_conf 9997006423577566786003679999998707998128998863898634287899999999982689978-984350
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHH--------------------HHH----------HH-HHHHHHHHHHHHHHHHHH
Q ss_conf 55665200002467771455441566--------------------441----------25-666655541289999999
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARI--------------------LLH----------QP-SGGFSGQASDIERHAQDI 158 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~i--------------------MiH----------qp-s~~~~G~~~di~~~a~el 158 (216)
+|||=|==|.++|+ +=+|.||+.- =+| || |.--.++..+..+.=.++
T Consensus 402 ~AASGgYWiasaA~--yIvA~p~TiTGSIGvfsvl~t~En~~~~y~Gv~~D~V~t~~la~~GS~~~~~t~~~~~~~Q~~v 479 (614)
T TIGR00705 402 MAASGGYWIASAAD--YIVADPNTITGSIGVFSVLPTVENSLDRYIGVHVDGVSTSELANVGSLLRPLTEEEQAIMQLSV 479 (614)
T ss_pred HHHCCCCHHCCCCC--EEEECCCCCCCCHHHHHHHHHHHHHHHCEECEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 23205300204557--1334787431001445325225542310002231633424644632234778847888863308
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 99999999999987199989999972458588889999758864460
Q gi|254780272|r 159 VKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205 (216)
Q Consensus 159 ~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii 205 (216)
+..-+++.++.++-=..+++.|.+--+ -+-.++++|...||||++=
T Consensus 480 ~~~Y~~FL~~Vs~aR~ls~~~vd~vAq-G~vw~G~dA~~~GLVD~LG 525 (614)
T TIGR00705 480 EAGYERFLEVVSKARNLSPTQVDKVAQ-GRVWTGEDAVKNGLVDELG 525 (614)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHC-CCEEEHHHHHHCCCEECCC
T ss_conf 889999999986230388889987756-8400015676638620268
No 27
>PRK11778 putative periplasmic protease; Provisional
Probab=98.38 E-value=3.5e-06 Score=59.48 Aligned_cols=160 Identities=26% Similarity=0.335 Sum_probs=90.4
Q ss_pred EEEE---CCCCCHHH----HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH-HHHHHH--HHHHCCCCEEEEEEC-CCC
Q ss_conf 7998---78318989----999999999974115769769999368761467-899999--986448734899831-556
Q gi|254780272|r 44 IVFV---TGQIEDHM----ATLICAQLLFLEAENPQKEISLYINSPGGVVTA-GMAIYD--TMQFIKPPISTFCMG-QAA 112 (216)
Q Consensus 44 iifl---~g~I~~~~----a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~-glaIyD--~i~~i~~~V~Ti~~G-~aa 112 (216)
.+|+ .|.|.-.- -+.|.+- | ..-.+++.+-+.++||||.|.. |++--. -++.-..|+ |||++ .||
T Consensus 70 r~fvldF~Gdi~As~v~~LReeitai-L--~~a~~~DeV~~rles~GG~v~~yglaasql~rlr~~~i~l-tv~vd~VAA 145 (317)
T PRK11778 70 RVFVLDFKGDIDASEVESLREEITAI-L--AVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPL-TVCVDKVAA 145 (317)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-H--HHCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCE-EEEEEEEEC
T ss_conf 39999546860377677789999999-9--7487898699999789956660577999999998679928-999701302
Q ss_pred CCCCCCCCCCCCCCEEECCCHHH------H----HHHHHH--H------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 65200002467771455441566------4----412566--6------65554128-----999999999999999999
Q gi|254780272|r 113 SMGSLLLSAGEKGMRFALPNARI------L----LHQPSG--G------FSGQASDI-----ERHAQDIVKIKRRLNEIY 169 (216)
Q Consensus 113 S~aslIl~aG~~g~R~~~pns~i------M----iHqps~--~------~~G~~~di-----~~~a~el~~~~~~l~~i~ 169 (216)
|=|-.+.++++ +=++.|.|.+ + +|...- | ..|...+. +..-++-.++++.+.++|
T Consensus 146 SGGY~mAc~AD--kIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~h 223 (317)
T PRK11778 146 SGGYMMACVAD--KIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEETH 223 (317)
T ss_pred CCCEEEEECCC--EEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 43022652188--7998786346532101666588999998599659981456777778889999999999999999999
Q ss_pred HHHC-----CCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCC
Q ss_conf 9871-----9998999997245858888999975886446045422
Q gi|254780272|r 170 VKNC-----GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210 (216)
Q Consensus 170 a~~T-----g~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e 210 (216)
..+. ++|...+.+. ..-..+++++|++.||||+|-++..-
T Consensus 224 ~~Fk~~Va~~Rp~~did~V-AtGrvW~G~qAlelGLVDeIgTsDd~ 268 (317)
T PRK11778 224 QLFKDFVQRYRPQLDIDKV-ATGEHWYGQQALELGLVDEIQTSDDY 268 (317)
T ss_pred HHHHHHHHHCCCCCCHHHH-CCCCEEEHHHHHHCCCCCCCCCHHHH
T ss_conf 9999999863984547875-68757757769875997425668999
No 28
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.13 E-value=5.6e-05 Score=51.90 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCCHHHH-----------------------HHHHHHHHHCCCCEEE
Q ss_conf 3189899999999999741157697699-993687614678-----------------------9999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGGVVTAG-----------------------MAIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG~v~~g-----------------------laIyD~i~~i~~~V~T 105 (216)
.++.++...+...+-.++. +.++.. .|.+.|+..-+| ..++..|..++.||..
T Consensus 22 al~~~~~~~l~~~~~~~~~---d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 98 (195)
T cd06558 22 ALSLEMLDELAAALDEAEA---DPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIA 98 (195)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9899999999999999974---9995799997499870479975888726666688999999999999999978999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|.+.|..|+++++ .|++.++++|-+-....|..-. .- -...+.+.+ ......+.+-
T Consensus 99 ai~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~G~~p~---~~----~~~~l~~~~----------g~~~a~~l~l 159 (195)
T cd06558 99 AVNGAALGGGLELALACD--IRIAAEDAKFGLPEVKLGLVPG---GG----GTQRLPRLV----------GPARARELLL 159 (195)
T ss_pred EECCCCCCCCCHHHHHCC--EEEEECCCEEECCHHCCCCCCC---CH----HHHHHHHHH----------CHHHHHHHHH
T ss_conf 868852777506466188--8998089857466211433887---21----999999985----------9999999997
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 585888899997588644604542251
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.-..++|+||.++|+||+++.. .++.
T Consensus 160 ~g~~~~a~eA~~~Glv~~v~~~-~~l~ 185 (195)
T cd06558 160 TGRRISAEEALELGLVDEVVPD-EELL 185 (195)
T ss_pred CCCCCCHHHHHHCCCCEEEECH-HHHH
T ss_conf 3985779999976962068578-7999
No 29
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.11 E-value=2.3e-05 Score=54.29 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=90.5
Q ss_pred EEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHHH-----------------------
Q ss_conf 998783-----18989999999999974115769769999-36------87614678-----------------------
Q gi|254780272|r 45 VFVTGQ-----IEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTAG----------------------- 89 (216)
Q Consensus 45 ifl~g~-----I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~g----------------------- 89 (216)
|-|+-| ++.++-..+...+..++. +.+|...| .+ .||++...
T Consensus 18 itlnrP~~~Nal~~~m~~el~~~~~~~~~---d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (271)
T PRK06142 18 VTLNRPGKGNAMNPAFWSEIPEIFRWLDA---DPEVRAVVLSGAGKHFSYGIDLMAMAGVFGQLGKDGLGRNRTDLRREI 94 (271)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99768887799899999999999999874---889489998389986078768898733344333331125499999999
Q ss_pred ---HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---99999986448734899831556652000024677714554415664412566665554128999999999999999
Q gi|254780272|r 90 ---MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLN 166 (216)
Q Consensus 90 ---laIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~ 166 (216)
...++.|..++.||...+-|.|.+.|.-|.++++ .|++.++++|.+-...-|.. .+.-... +
T Consensus 95 ~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~~~----~------ 159 (271)
T PRK06142 95 LRLQASINAVADCRKPVLAAVQGWCIGGAVDLISACD--MRYASADAKFSIREIDLGMV---ADVGTLQ----R------ 159 (271)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHC--CCCCCCCCEEECCCCCCCCC---CCCCHHH----H------
T ss_conf 9999999999728998999988844407589998615--12227985898950203448---8845999----9------
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 99998719998999997245858888999975886446045422510
Q gi|254780272|r 167 EIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 167 ~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
+.+..|. .+..+.+-.-..++|+||+++||||+|+...+++.+
T Consensus 160 --l~~~iG~--~~a~~l~ltg~~i~A~eA~~~Glv~~vv~~~e~l~~ 202 (271)
T PRK06142 160 --LPRIIGD--GHLRELAYTGRDIDAAEAEKIGLVNRVYDDAEALLA 202 (271)
T ss_pred --HHHHHCH--HHHHHHHHHCCEECHHHHHHCCCCCEECCCHHHHHH
T ss_conf --9999789--999999830976159999987984064198899999
No 30
>pfam00378 ECH Enoyl-CoA hydratase/isomerase family. This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase.
Probab=98.06 E-value=2.4e-05 Score=54.17 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHH---------------HHHHHHHHHHHCCCCEEEEE
Q ss_conf 318989999999999974115769769999-368------76146---------------78999999864487348998
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVT---------------AGMAIYDTMQFIKPPISTFC 107 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~---------------~glaIyD~i~~i~~~V~Ti~ 107 (216)
.++.++..++...+-..+ .+++|.+.| .+. |+|+. ....++..|..++.||...+
T Consensus 13 a~~~~m~~~l~~~~~~~~---~d~~i~vvil~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIa~v 89 (169)
T pfam00378 13 ALSAELLTELIQALEKLE---QDPSVRAVVLTGAPGAFSAGADIKEMAAKRPAQQAQFSLEALDLWSRLEDLPKPVIAAV 89 (169)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989999999999999998---68994599997899642258888998616837788999999999999996899899996
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 31556652000024677714554415664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
-|.|.+.|+.|.++++ .|++.++++|-+-...-|.... ... ... +.+.-|. ....+.+-..
T Consensus 90 ~G~a~GgG~~la~~~D--~~va~~~a~f~~pe~~~Gl~p~---~~~----~~~--------l~~~~g~--~~a~~l~ltg 150 (169)
T pfam00378 90 NGYALGGGLELALACD--YRIAADNAKFGLPETKLGIIPG---AGG----TQR--------LPRIIGH--SAALEMLLTG 150 (169)
T ss_pred CCCEECCCHHHHHHCC--CHHHCCCCEEECCCCCCCCCCC---CCH----HHH--------HHHHHCH--HHHHHHHHCC
T ss_conf 6836504608887376--0653579847475033775864---469----999--------9999799--9999999819
Q ss_pred CCCCHHHHHHCCCCCEEEC
Q ss_conf 5888899997588644604
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~ 206 (216)
..++++||+++||||+|+.
T Consensus 151 ~~~~a~eA~~~Glv~~vVP 169 (169)
T pfam00378 151 RRIRAQEALKMGLVDKVVP 169 (169)
T ss_pred CCCCHHHHHHCCCEEECCC
T ss_conf 9467999998296532159
No 31
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.04 E-value=3.4e-05 Score=53.24 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH---------------HHHHHHHHHHCCCCEEEE
Q ss_conf 8318989999999999974115769769999-368------761467---------------899999986448734899
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA---------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~---------------glaIyD~i~~i~~~V~Ti 106 (216)
-.++.++...+...+..++.. .++...| .+. |+|+.. ...+++.+..++.||...
T Consensus 29 Nal~~~~~~~L~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAa 105 (225)
T PRK05869 29 NALTRQVYREIVAAADELGRR---DDVAAVILFGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAA 105 (225)
T ss_pred CCCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 789999999999999999648---99459999889974772677787722683345578999999999998389989999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|..|.++++ .|++.++++|-+-....|..-...-. .++.+. .|. ....+.+-.
T Consensus 106 v~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~-------~~l~~~--------iG~--~~a~el~lt 166 (225)
T PRK05869 106 ITGYALGAGLTLALAAD--WRVSGDNVKFGATEILAGLAPRGDGM-------ARLTRA--------AGP--SRAKELVFS 166 (225)
T ss_pred ECCCCCHHHHHHHHHHC--HHHHCCCCEEECCCCCCCCCCCCCHH-------HHHHHH--------HHH--HHHHHHHHC
T ss_conf 82800347899999704--46307984998821064748776899-------999999--------779--999999985
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-..++|+||+++||||+|+.. .++.+
T Consensus 167 g~~~~a~eA~~~Glv~~vv~~-~~l~~ 192 (225)
T PRK05869 167 GRFFDAEEALALGLIDEMVAP-DDVYD 192 (225)
T ss_pred CCCCCHHHHHHCCCCCEEECC-CHHHH
T ss_conf 997779999984986276581-28999
No 32
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.00011 Score=49.92 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHH-------------------------------HHHHHHH
Q ss_conf 318989999999999974115769769999-36876146789-------------------------------9999986
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGM-------------------------------AIYDTMQ 97 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~gl-------------------------------aIyD~i~ 97 (216)
.++.++...+...+-.++. +.++...| .+.|+...+|. ..+..+.
T Consensus 29 al~~~~~~eL~~~l~~~~~---d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (272)
T PRK06210 29 AWTPVMEAEVYAAMDRAEA---DPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLT 105 (272)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999972---9990799997899966516777988606841000001455777654267899999998
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 44873489983155665200002467771455441566441256666555412899999999999999999998719998
Q gi|254780272|r 98 FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177 (216)
Q Consensus 98 ~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~ 177 (216)
.++.||...+-|.|.+.|+-|.++++ .|++.++++|-+-.+.-|.... .-..+ .+ .+..|.
T Consensus 106 ~~~kPvIaav~G~a~GgG~~la~~cD--~rias~~a~f~~p~~~~Gl~p~---~g~~~-~l-----------~r~iG~-- 166 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFARRGLIAE---HGISW-IL-----------PRLVGH-- 166 (272)
T ss_pred HCCCCEEEEEEEEEECCCCEEEECCC--EEEECCCCEEECCCCCCCCCCC---CCHHH-HH-----------HHHHHH--
T ss_conf 48998899982366048751221365--4342477579667455276887---32999-99-----------998769--
Q ss_pred HHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 9999972458588889999758864460454
Q gi|254780272|r 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 178 e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~ 208 (216)
.+-.+.+-...-++|+||.++|||++|+...
T Consensus 167 ~~a~el~ltg~~i~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 167 ANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred HHHHHHHHCCCCCCHHHHHHCCCCEEECCHH
T ss_conf 9999999849999889999779852753815
No 33
>pfam01343 Peptidase_S49 Peptidase family S49.
Probab=97.96 E-value=3e-05 Score=53.64 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHH------HHH------------HHHHH-------HHH---
Q ss_conf 87348998315566520000246777145544156644125------666------------65554-------128---
Q gi|254780272|r 100 KPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP------SGG------------FSGQA-------SDI--- 151 (216)
Q Consensus 100 ~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqp------s~~------------~~G~~-------~di--- 151 (216)
+-||++++-+.|+|.|-.|.++++ +-++.|.+.+-..-. ... ..|+. .++
T Consensus 6 ~KPV~a~~~~~aaSg~Y~lAs~ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~e 83 (154)
T pfam01343 6 GKPVVAYAGNYAASGGYYLASAAD--KIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKIDTIRAGEYKDAGSLFRPLTPE 83 (154)
T ss_pred CCCEEEEECCHHHHHHHHHHHHCC--EEEECCCCEEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 997999978845779999998669--899879974746732401152879998648764466326545555756779999
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf --99999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 152 --ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 152 --~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
+..-..++.+.+.+.+..++.-+.+.+++.+..+. ..+++++|+++||||+|...
T Consensus 84 ~r~~~~~~l~~~~~~F~~~Va~~R~~~~~~~~~~~~g-~v~~g~~A~~~GLvD~ig~~ 140 (154)
T pfam01343 84 EREALQRMLDETYQMFVQKVAKNRNLTVDQVDKIAEG-RVWTGQQAVEAGLVDELGTL 140 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCCCHHHHHHCCCCCCCCCH
T ss_conf 9999999999999999999998669998999998679-98779999987996737999
No 34
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.96 E-value=9.5e-05 Score=50.45 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHHH---------------------HHHHHHHHHCCC
Q ss_conf 318989999999999974115769769999-368------7614678---------------------999999864487
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTAG---------------------MAIYDTMQFIKP 101 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~g---------------------laIyD~i~~i~~ 101 (216)
.++.++...+...+..++.. +.++...| .+. |+++... ..+++.|+.++.
T Consensus 27 al~~~m~~el~~al~~~~~~--~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k 104 (266)
T PRK05981 27 AVSIDMLGGLAEALDAIEDK--KAEVRCLVITGAGRGFCTGANLQGRGSGNKMSQSGKDAGAALETAYHPFLRRLRNLHC 104 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999839--9987999998899872277536654012211223403689999999999999995899
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 3489983155665200002467771455441566441256666---5554128999999999999999999987199989
Q gi|254780272|r 102 PISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178 (216)
Q Consensus 102 ~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~---~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e 178 (216)
||...+-|.|.+.|.-|.++++ .|++.++++|.+-...-|. .|... .+. +..|. .
T Consensus 105 PvIaai~G~a~GgG~~lal~cD--~~ias~~a~f~~~~~~lGl~p~~g~~~-------~l~-----------r~iG~--~ 162 (266)
T PRK05981 105 PIVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAFRRIGLVPDGGSTW-------LLP-----------RLVGK--A 162 (266)
T ss_pred CEEEEEECEEECCCHHHHHCCC--CCCCCCCCEEECCCCCEEECCCCCHHH-------HHH-----------HHHHH--H
T ss_conf 9899980766326367763064--056578878975665660178763999-------999-----------98669--9
Q ss_pred HHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 999972458588889999758864460454225
Q gi|254780272|r 179 EVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 179 ~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
+-.+.+-.-..++|+||.++|||++|+.. .++
T Consensus 163 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l 194 (266)
T PRK05981 163 RAMELSLLGEKLPAETALEWGLVNRVYDD-AEL 194 (266)
T ss_pred HHHHHHHCCCCCCHHHHHHCCCEEEECCH-HHH
T ss_conf 99999982998759999977981267085-799
No 35
>PRK07510 consensus
Probab=97.95 E-value=6.6e-05 Score=51.44 Aligned_cols=143 Identities=20% Similarity=0.279 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCHHHHH---------------------------HHHHHHHHCC
Q ss_conf 831898999999999997411576976999-936876146789---------------------------9999986448
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLY-INSPGGVVTAGM---------------------------AIYDTMQFIK 100 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~-INSpGG~v~~gl---------------------------aIyD~i~~i~ 100 (216)
..++.++-..+...+-.++ .+.+|... |.+.|+..-+|. .+...+..++
T Consensus 27 NAl~~~m~~el~~~~~~~~---~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (266)
T PRK07510 27 NALNDDLTRALVEAARRAA---DDPEVRAVLLTGAGGAFCAGGDVKSMAAARAAPPFEGAQRVANLRRRMEVSRLLHQMP 103 (266)
T ss_pred CCCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9989999999999999986---4899459999789986055657898861447776327789999999999999998399
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 73489983155665200002467771455441566441256666555412899999999999999999998719998999
Q gi|254780272|r 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 101 ~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.||...+-|.|.+.|+-|.++++ .|++.++++|.+..+.-|......-.. .+- +. -|. ..-
T Consensus 104 kPvIaav~G~a~GgG~~la~~cD--~rias~~a~f~~~~~~~Gl~p~~g~~~----~l~---r~--------iG~--~~a 164 (266)
T PRK07510 104 KPTVAQIDGAAAGAGLSLALACD--LRVAGASAKLTTAFAKVGLSGDFGGTY----FLT---RL--------VGP--AKA 164 (266)
T ss_pred CCEEEEECCEEEEHHHHHHHCCC--CHHCCCCCEEECCCCCEECCCCCCHHH----HHH---HH--------HHH--HHH
T ss_conf 98899987977642256765046--010154437845765430288634899----999---99--------629--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 9972458588889999758864460454225101
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~~ 214 (216)
.+.+-.-..++|+||.++|||++|+.. .++.++
T Consensus 165 ~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~ 197 (266)
T PRK07510 165 RELYLTSPVLSAAEALALGLVNRVVPD-AEVEAE 197 (266)
T ss_pred HHHHHHCCCCCHHHHHHCCCCCEEECH-HHHHHH
T ss_conf 999982999479999977975434585-799999
No 36
>PRK08139 enoyl-CoA hydratase; Validated
Probab=97.94 E-value=7.7e-05 Score=51.03 Aligned_cols=141 Identities=16% Similarity=0.281 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEE-EECC------CCCHHHH----------------HHHHHHHHHCCCCEEE
Q ss_conf 831898999999999997411576976999-9368------7614678----------------9999998644873489
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLY-INSP------GGVVTAG----------------MAIYDTMQFIKPPIST 105 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~-INSp------GG~v~~g----------------laIyD~i~~i~~~V~T 105 (216)
-.++.++-..+...+..++.. ..+... |.+- |||+.+. ..++..+..++.||..
T Consensus 32 Nal~~~m~~el~~~l~~~~~d---~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIa 108 (265)
T PRK08139 32 NALSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRADPGLAYFRALFARCSRVMQAIVALPQPVIA 108 (265)
T ss_pred CCCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 898999999999999999758---99359999679986427878689755567788999999999999999859998999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|.+.|+-|.++++ .|++.++++|.+-...-|..+...... +.+..|. .+-.+.+-
T Consensus 109 av~G~a~GgG~~lal~~D--~~ias~~a~f~~pe~~~Gl~~~~~~~~----------------L~r~ig~--~~a~~l~l 168 (265)
T PRK08139 109 RVHGIATAAGCQLVASCD--LAVAADTARFAVPGVNIGLFCSTPMVA----------------LSRNVPR--KQAMEMLL 168 (265)
T ss_pred EECCEEEEEECHHHCCCC--EEEECCCCCCCCCCCEECCCCCCCHHH----------------HHCCCHH--HHHHHHHH
T ss_conf 977823541401100476--645326522038655366255762654----------------4010008--88899986
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 5858888999975886446045422510
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.-.+++|+||.++|||++|+.. .++.+
T Consensus 169 tg~~~~A~eA~~~Glv~~vv~~-~~l~~ 195 (265)
T PRK08139 169 TGEFIDAATAREWGLVNRVVPA-DALDA 195 (265)
T ss_pred CCCCCHHHHHHHCCCCEEECCH-HHHHH
T ss_conf 4784069999987980476287-79999
No 37
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=97.94 E-value=3.2e-05 Score=53.38 Aligned_cols=141 Identities=15% Similarity=0.182 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC------CCHHH------------------HHHHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769999-3687------61467------------------8999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG------GVVTA------------------GMAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG------G~v~~------------------glaIyD~i~~i~~~V~ 104 (216)
.++.++-..+...|..++ .+++|...| .+.| +|+.. ...++..|..++.||.
T Consensus 27 al~~~m~~el~~al~~~~---~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvI 103 (261)
T PRK05995 27 AFNETVIAELTAAFRALD---ADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVI 103 (261)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 989999999999999997---29993699997899843657677988752037823556679999999999996899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|.-|.++++ .|++.++++|.+....-|..... . ...+ .+. .+.....+.+
T Consensus 104 aai~G~a~GgG~~Lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~--~---~~~l-----------~~~--iG~~~a~~l~ 163 (261)
T PRK05995 104 ARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEVRLGLIPAT--I---SPYV-----------IRA--MGERAARRYF 163 (261)
T ss_pred EEECCEEEECCHHHHHHCC--EEECCCCCEEECHHHHEEECCCC--C---HHHH-----------HHC--CCHHHHHHHH
T ss_conf 9978988604177765166--53033885786526445344651--1---0024-----------420--1599999988
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 458588889999758864460454225101
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIEEK 214 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~~~ 214 (216)
-....++|+||+++||||+|+.+ .++.++
T Consensus 164 ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~ 192 (261)
T PRK05995 164 LTAERFDAAEALRLGLVHEVVPA-DALDAK 192 (261)
T ss_pred HHCCCCCHHHHHHCCCCCEECCH-HHHHHH
T ss_conf 74896879999977980235686-799999
No 38
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.88 E-value=0.00024 Score=47.86 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCC-HHHH------------------HHHHHHHHHCCCCEEEEEEC
Q ss_conf 3189899999999999741157697699-99368761-4678------------------99999986448734899831
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGGV-VTAG------------------MAIYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG~-v~~g------------------laIyD~i~~i~~~V~Ti~~G 109 (216)
.++.++-..+...|-.++ .+.++.+ .|.+-|+. .-+| +.....+..++.||...+-|
T Consensus 27 al~~~~~~el~~al~~~~---~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaaV~G 103 (259)
T PRK06494 27 ALHSDAHFELEKVFDDFA---ADPEQWVAIVTGAGDKAFSAGNDLKWQAAGGKRGWPESGFAGLTSRFDLDKPIIAAVNG 103 (259)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 989999999999999986---39993599997589981577877676642244565266789999996199988999706
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 55665200002467771455441566441256666555412899999999999999999998719998999997245858
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~ 189 (216)
.|.+.|.-|.++++ .|++.++++|.+-...-|..-...-. . ++ .+..| .....+.+-....
T Consensus 104 ~a~GgG~~lal~cD--~~ias~~a~f~~pe~~~Gl~p~~g~~---~----~l--------~~~iG--~~~a~~llltg~~ 164 (259)
T PRK06494 104 VAMGGGFEIALACD--LIIAAENATFALPEPRVGLAALAGGL---H----RL--------PRQIG--LKRAMGMILTGRH 164 (259)
T ss_pred EEEECCCEEEHHHC--CCCCCCCCEEECHHHCCCCCCCCCHH---H----HH--------HHHHH--HHHHHHHHHCCCC
T ss_conf 58625430002101--05667783892746514888873099---9----99--------99972--9999999983996
Q ss_pred CCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 88899997588644604542251
Q gi|254780272|r 190 MSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 190 lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
++|+||+++|||++|+.+ .++.
T Consensus 165 ~~a~eA~~~Glv~~vv~~-~~l~ 186 (259)
T PRK06494 165 VTAREGLELGFVNEVVPA-GEAL 186 (259)
T ss_pred CCHHHHHHCCCCCEEECH-HHHH
T ss_conf 659999986996288787-7999
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.88 E-value=0.00013 Score=49.51 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE-C------CCCCHHH-----------------HHHHHHHHHHCCCCEE
Q ss_conf 83189899999999999741157697699993-6------8761467-----------------8999999864487348
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYIN-S------PGGVVTA-----------------GMAIYDTMQFIKPPIS 104 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~IN-S------pGG~v~~-----------------glaIyD~i~~i~~~V~ 104 (216)
-.++.++-..+...+-.++. +.+|...|= + -|+|+.. ...++..|..++.||.
T Consensus 25 Nal~~~m~~el~~al~~~~~---d~~vr~vvl~g~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 101 (257)
T PRK06495 25 NALSREMRDELIAVFDSLND---RPDVRVVVLTGAGKVFCAGADLKNRPDLESGPGALWAHNRRTREVFYCIRECAKPVI 101 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 68999999999999999972---999169999767981276887565146556703589999999999999995899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|+-|.++++ .|++.++++|-+-...-|..|-. ..+. +..| ...-.+.+
T Consensus 102 Aav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~Gl~gg~-------~~l~-----------r~iG--~~~a~~l~ 159 (257)
T PRK06495 102 AAVNGPALGAGLGLVASCD--IIVASENAVFGLPEIDVGLAGGG-------KHAM-----------RLFP--HSLTRRMM 159 (257)
T ss_pred EEECCEEECCCHHHHHHHH--HHEECCCCEEECCCCCEEEECCH-------HHHH-----------HHHC--HHHHHHHH
T ss_conf 9971377417225665432--41004788898632374120536-------7899-----------9847--99999998
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 458588889999758864460454
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~ 208 (216)
-.-..++|+||.++||||+|+...
T Consensus 160 ltg~~~~aeeA~~~Glv~~vv~~~ 183 (257)
T PRK06495 160 LTGYRVPASELYRLGIIEACLPPD 183 (257)
T ss_pred HHCCCCCHHHHHHCCCCCEEECHH
T ss_conf 618967899999879974874877
No 40
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00076 Score=44.73 Aligned_cols=135 Identities=21% Similarity=0.197 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCC------CCHHHH------------HHHHH---HHHHCCCCEEEEE
Q ss_conf 318989999999999974115769769-9993687------614678------------99999---9864487348998
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPG------GVVTAG------------MAIYD---TMQFIKPPISTFC 107 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpG------G~v~~g------------laIyD---~i~~i~~~V~Ti~ 107 (216)
.++.++...+...+-.++. ++++. +.|.+.| +|+.+- -.+++ .|..++.||...+
T Consensus 26 al~~~m~~eL~~al~~~~~---d~~vr~vvltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 102 (254)
T PRK05870 26 AVTDEMSAQLRAAVQAAEA---DPDVHALVVTGAGKAFCAGADLTALGAAVGGPAEDGLRRVYDGFMAVASCPLPTIAAV 102 (254)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899999999999999861---9995699998799825727846887605464278999999999999996899999998
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 31556652000024677714554415664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
-|.|.+.|.-|.++++ .|++.++++|-+....-|......-. . .+ .+..|. .+-.+.+-.-
T Consensus 103 ~G~a~GgG~~lalacD--~ria~~~a~f~~p~~~lGl~p~~g~~---~-~L-----------~r~iG~--~~A~ellltg 163 (254)
T PRK05870 103 NGAAVGAGLNLALAAD--VRIAGPAALFDPRFQKLGLHPGGGAT---W-ML-----------QRAVGP--QVARAALLFG 163 (254)
T ss_pred CCCCCCCCCHHHHCCC--EEEECCCCEEECCCCCCCCCCCCCHH---H-HH-----------HHHHHH--HHHHHHHHHC
T ss_conf 7714656716664176--89985997883520277208887889---9-99-----------999709--9999999939
Q ss_pred CCCCHHHHHHCCCCCEEEC
Q ss_conf 5888899997588644604
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~ 206 (216)
..++|+||+++|||++|++
T Consensus 164 ~~i~A~eA~~~Glv~~Vv~ 182 (254)
T PRK05870 164 MRFDAEEAVRHGLALMVAD 182 (254)
T ss_pred CCCCHHHHHHCCCCCEECC
T ss_conf 9886999998699866778
No 41
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00016 Score=49.00 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC------CCHHH----------------HHHHHHHHHHCCCCEEE
Q ss_conf 8318989999999999974115769769999-3687------61467----------------89999998644873489
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG------GVVTA----------------GMAIYDTMQFIKPPIST 105 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG------G~v~~----------------glaIyD~i~~i~~~V~T 105 (216)
-.++.++...+...+..++. +.+|...| .+.| +|+.. ...++..|..++.||..
T Consensus 23 NAl~~~m~~el~~~~~~~~~---d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 99 (249)
T PRK07938 23 NALPSRGWFALADAITAAGR---DPDTRVVILRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECPVPVIA 99 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999999999855---899269999779997262576788753774456777652579999999829998999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|++.|.-|.++++ -|++.++++|-+-...-|..|-.. .+. +..|. .+-.+.+-
T Consensus 100 aV~G~a~GgG~~lal~cD--~~ias~~a~f~~pev~~G~~g~~~-------~L~-----------rlvG~--~~A~el~l 157 (249)
T PRK07938 100 AVHGFCLGGGIGLVGNAD--VIVASDDATFGLPEVDRGALGAAT-------HLS-----------RLVPQ--HLMRRLFF 157 (249)
T ss_pred EECCEEEEEEEEEEECCC--HHHHCCCCEEECCCCCCCCCCHHH-------HHH-----------HHHCH--HHHHHHHH
T ss_conf 975757661213120433--444426877977565751103777-------999-----------98269--99999997
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 5858888999975886446045422510
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.-..++|+||+++|||++|+.. .++.+
T Consensus 158 tg~~i~A~eA~~~GLvn~vv~~-~~l~~ 184 (249)
T PRK07938 158 TAATIDAAELHHFGSVHEVVPR-DELDE 184 (249)
T ss_pred HCCCCCHHHHHHCCCHHEEECH-HHHHH
T ss_conf 2981479999977972603084-59999
No 42
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00012 Score=49.71 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCCHHHHH------------------------HHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769-99936876146789------------------------99999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPGGVVTAGM------------------------AIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpGG~v~~gl------------------------aIyD~i~~i~~~V~ 104 (216)
.++.++-..+...+..++. +++|. +.|.+.|+..-+|. .++..|..++.||.
T Consensus 28 al~~~~~~~l~~~~~~~~~---d~~v~~iVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (263)
T PRK06688 28 ALTAAMYQALADALEAAAT---DPAVRVVLLTGAGGAFSAGGDIKDFDAAPGGGPTYPEDELAPVNRFLRAIAALPKPVV 104 (263)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999999999999963---8993699997799867689767988725666505578989999999999995899889
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|+.|.++++ .|++.++++|.+-...-|...... ... + +.+..|. .+-.+.+
T Consensus 105 aai~G~a~GgG~~la~~cD--~ria~~~a~f~~pe~~~Gl~p~~~---~~~----~--------l~r~iG~--~~a~~ll 165 (263)
T PRK06688 105 AAVNGAAVGVGVSLALACD--LVYASDSAKFSLPFAKLGLCPDAG---GSA----L--------LPRLIGR--ARAAELL 165 (263)
T ss_pred EEECCEECCCCHHHHHHCC--CHHCCCCCEECCCCCCEECCCCCC---HHH----H--------HHHHHCH--HHHHHHH
T ss_conf 9975766145278886234--010045666606512463688831---889----9--------9998389--9999987
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 45858888999975886446045422510
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-.-..++|+||.++||||+|+.. .++.+
T Consensus 166 ltg~~i~a~eA~~~Glv~~vv~~-~~l~~ 193 (263)
T PRK06688 166 LLGEPLTAAEALRIGLVNRVVPA-AELDA 193 (263)
T ss_pred HCCCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 40898789999987994266580-68999
No 43
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=97.85 E-value=0.0003 Score=47.24 Aligned_cols=141 Identities=16% Similarity=0.297 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHH----------------HHHHHHHHHHCCCCEEE
Q ss_conf 8318989999999999974115769769999-36------8761467----------------89999998644873489
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTA----------------GMAIYDTMQFIKPPIST 105 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~----------------glaIyD~i~~i~~~V~T 105 (216)
-.++.++...+...+..++. +.+|.+.| .+ .|+|+.+ +..++..+..++.||..
T Consensus 23 Nal~~~~~~~l~~a~~~~~~---d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 99 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEK---DDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQQTFERVEKFSKPVIA 99 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999999999987---889569999789987228997788743566466899999999999999958998999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|.+.|+-|.++++ .|++.++++|-+-...-|.. .+..- ..++-+ .-|. .+-.+.+-
T Consensus 100 aV~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l~r--------~iG~--~~a~~lll 160 (257)
T PRK07658 100 AIHGAALGGGLELAMSCH--IRFATESAKLGLPELNLGLI---PGFAG----TQRLPR--------YVGK--AKALEMML 160 (257)
T ss_pred EECCHHHHCCHHHHHCCC--EEEECCCCCCCCHHCCEEEC---CCCCH----HHHHHH--------HHHH--HHHHHHHH
T ss_conf 976725314257753265--34311004046642167517---87457----999999--------9679--99999997
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 585888899997588644604542251
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.-..++|+||.++|||++|+.. .++.
T Consensus 161 tg~~~~a~eA~~~Glv~~vv~~-~~l~ 186 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGAFSE-EELL 186 (257)
T ss_pred CCCCCCHHHHHHCCCCCEEECH-HHHH
T ss_conf 5898989999977995677086-8999
No 44
>PRK06951 consensus
Probab=97.85 E-value=0.00028 Score=47.45 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH------------HHHHHHHHHHCCCCEEEEEECC
Q ss_conf 318989999999999974115769769999-368------761467------------8999999864487348998315
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA------------GMAIYDTMQFIKPPISTFCMGQ 110 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~------------glaIyD~i~~i~~~V~Ti~~G~ 110 (216)
.++.++-..+...+-.++. +.++...| .+. |+|+.+ -...+..+..++.||...+-|.
T Consensus 24 al~~~m~~el~~~~~~~~~---d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~ 100 (254)
T PRK06951 24 AITAAMYQTMADALAAAQD---DAAVRAILIRGSDGIFSAGNDLEDFLKAPPKDEDAPVFQFLRQISSAPKPIVAAVCGP 100 (254)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 9899999999999999866---8891799998799987689975988618764333289999999983899989998687
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 56652000024677714554415664412566665554128999999999999999999987199989999972458588
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~l 190 (216)
|.+.|.-|.++++ .|++.++++|.+-...-|........ ..+ .+..|. .+..+.+-.-..+
T Consensus 101 a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~l-----------~~~iG~--~~a~ellltg~~~ 161 (254)
T PRK06951 101 AVGIGTTMLLHCD--LVYAADTAAFSLPFAQLGLCPEAASS----LLL-----------PRLAGY--QRAAEKLLLGEPF 161 (254)
T ss_pred EECCCHHHHHHCC--CHHHCCCCCCCCHHHCCCCCCCCCHH----HHH-----------HHHHCH--HHHHHHHHHCCCC
T ss_conf 5144157766043--01220367013665373048885399----999-----------998799--9999887748754
Q ss_pred CHHHHHHCCCCCEEECCCCCCC
Q ss_conf 8899997588644604542251
Q gi|254780272|r 191 SASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+|+||+++|||++|+.. .++.
T Consensus 162 ~A~eA~~~Glv~~vv~~-~~l~ 182 (254)
T PRK06951 162 DALEAHEIGLVNRVLPA-AELD 182 (254)
T ss_pred CHHHHHHCCCCCEECCH-HHHH
T ss_conf 69999987994166186-7999
No 45
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.84 E-value=0.00018 Score=48.74 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=100.0
Q ss_pred HHHCCCEEE--ECCCCCHHHHHHHHHHHHHHHHCCCCCC-EE-EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 451467799--8783189899999999999741157697-69-9993687614678999999864487348998315566
Q gi|254780272|r 38 RLLKERIVF--VTGQIEDHMATLICAQLLFLEAENPQKE-IS-LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAAS 113 (216)
Q Consensus 38 ~L~~~Riif--l~g~I~~~~a~~iia~Ll~L~~~~~~k~-I~-l~INSpGG~v~~glaIyD~i~~i~~~V~Ti~~G~aaS 113 (216)
.++..|... +++++-+--+....+.|. +++... ++ +-+|||||+|...+++=--++...-++..---..|+|
T Consensus 70 ~~~dgr~l~VvVse~~a~~da~sal~~li----r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~Cas 145 (245)
T COG3904 70 KTLDGRQLPVVVSEPGANVDAASALGRLI----RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCAS 145 (245)
T ss_pred HHCCCCEEEEEECCCCCCCCHHHHHHHHH----HCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHC
T ss_conf 54268535699737977834899999998----55676167777850799857888764014434056722453555523
Q ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHC----CC
Q ss_conf 5200002467771455441566441256666555-4128999999999-9999999999871999899999724----58
Q gi|254780272|r 114 MGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQ-ASDIERHAQDIVK-IKRRLNEIYVKNCGKTYEEVEKTLD----RD 187 (216)
Q Consensus 114 ~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~-~~di~~~a~el~~-~~~~l~~i~a~~Tg~~~e~i~~~~~----rD 187 (216)
+-.++|++|- .|++-+.+.+=.||++++-.-. .+. .+++.... ...++. -|-...|.+.--+....+ +=
T Consensus 146 aCpl~fagGv--rRvve~~ayiGVHq~~~~g~~~r~~~--~~a~Sanq~~tar~a-~ylrEMgigpgLlq~ml~tpp~di 220 (245)
T COG3904 146 ACPLMFAGGV--RRVVEDFAYIGVHQITTTGRRERIVN--GKAKSANQKVTARLA-AYLREMGIGPGLLQMMLATPPSDI 220 (245)
T ss_pred CCHHHHHCCE--EEEECCCCEEEEEECCCCCCCCCCCC--HHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 4526631251--46612562355642101578666671--766556666699999-999980898799999860894765
Q ss_pred CCCCHHHHHHCCCCCE
Q ss_conf 5888899997588644
Q gi|254780272|r 188 HIMSASEACDWGVVDK 203 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~ 203 (216)
++++.+|-.+|-|+.+
T Consensus 221 r~l~~kem~~~~L~t~ 236 (245)
T COG3904 221 RQLGLKEMTAMKLVTS 236 (245)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 5513778765402256
No 46
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.0013 Score=43.25 Aligned_cols=140 Identities=18% Similarity=0.269 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC-------CCHHH---------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769999-3687-------61467---------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG-------GVVTA---------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG-------G~v~~---------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++...+...+-.++. +.++...| .+.| +|+.. ...+++.|..++.||...
T Consensus 32 al~~~m~~eL~~~~~~~~~---d~~vrvvVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 108 (260)
T PRK06143 32 ILGTPVILALTQALRWLAA---DPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIAR 108 (260)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999999998853---8995599996588776348856798861596568999999999999999489988999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-+.++++ .|++.++++|-+-...-|.-+- . . ...+. +..|. .+-.+.+-.
T Consensus 109 v~G~a~GgG~~lal~cD--~~ias~~a~f~~pe~~~Gip~~---~-~-~~~l~-----------r~iG~--~~A~el~lt 168 (260)
T PRK06143 109 IPGWCLGGGLELAAACD--LRIAAHDAQFGMPEVRVGIPSV---I-H-AALLP-----------RLIGW--ARTRWLLLT 168 (260)
T ss_pred ECCEEECCCHHHHHCCC--EEEECCCCCEECCCCCCCCCCC---C-H-HHHHH-----------HHHHH--HHHHHHHHC
T ss_conf 87961104257664477--6532236523171015575886---3-8-99999-----------99879--999999985
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-..++|+||.++||||+|+.. .++.+
T Consensus 169 g~~i~a~eA~~~Glv~~vv~~-~~l~~ 194 (260)
T PRK06143 169 GETIDAAQALAWGLVDRVVPL-AELDA 194 (260)
T ss_pred CCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 998889999984961435185-79999
No 47
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.82 E-value=0.00034 Score=46.98 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH-------------HHHHHHHHHHCCCCEEEEEE
Q ss_conf 8318989999999999974115769769999-368------761467-------------89999998644873489983
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA-------------GMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~-------------glaIyD~i~~i~~~V~Ti~~ 108 (216)
-.++.++...+...+-.++. +.++...| .+. |+|+.+ ...+++.|..++.||...+-
T Consensus 29 Nal~~~m~~el~~al~~~~~---d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaaV~ 105 (260)
T PRK08138 29 NALNMEVRQQLAEHFTSLSE---DPDIRVIVLTGGGTVFAAGADLKEFATAGAIELYLRHTERYWEAIAQCPKPVIAAVN 105 (260)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99899999999999999976---899669999789987646878888844584678999999999999838998999978
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 15566520000246777145544156644125666655541289999999999999999999871999899999724585
Q gi|254780272|r 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188 (216)
Q Consensus 109 G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~ 188 (216)
|.|.+.|.-|.++++ .|++.++++|-+-...-|... +.-... .+- + ..|. .+-.+.+-.-.
T Consensus 106 G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p---~~g~~~-~l~---r--------~iG~--~~A~ellltg~ 166 (260)
T PRK08138 106 GYALGGGCELAMHAD--IIVAGESASFGQPEIKVGLMP---GAGGTQ-RLV---R--------AVGK--FKAMRMALTGC 166 (260)
T ss_pred CEEECCCHHHHHHCC--CCCCCCCCCEECCCCEECCCC---CCCHHH-HHH---H--------HHHH--HHHHHHHHCCC
T ss_conf 940333079987410--113354442446410168788---855899-999---9--------9759--99999986088
Q ss_pred CCCHHHHHHCCCCCEEECCC
Q ss_conf 88889999758864460454
Q gi|254780272|r 189 IMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 189 ~lsa~EA~eyGliD~Ii~~~ 208 (216)
.++|+||+++|||++|+...
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK08138 167 MVPAPEALAIGLVSEVVEDE 186 (260)
T ss_pred CCCHHHHHHCCCCCEEECHH
T ss_conf 25799999869953874816
No 48
>PRK07830 consensus
Probab=97.82 E-value=0.00029 Score=47.36 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH----------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769999-368------761467----------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA----------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~----------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++...+...+..++. +.++...| .+. |+++.. ...+++.|..++.||...
T Consensus 34 al~~~m~~el~~a~~~~~~---d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 110 (267)
T PRK07830 34 SLTVPVLTGLADALEGAAT---DPRVKVVRLGGAGRGFSSGAGISADDVWGGGEPPTAVVDEANRAVRAIVALPVPVVAV 110 (267)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899999999999998854---8995599996899877178870555402665658999999999999999689989999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|-+-....|..- +.-. .. .+.+.+ |. ..-.+.+-.
T Consensus 111 v~G~a~GgG~~lal~cD--~~ia~~~a~f~~p~~~lGi~p---~~g~-~~---~l~~~i--------G~--~~A~~lllt 171 (267)
T PRK07830 111 VQGPAAGVGVSLALACD--LVLASESAFFMLAFTKIGLMP---DGGA-SA---LVAAAI--------GR--IRAMRMALL 171 (267)
T ss_pred ECCEEEEHHHHHHHHHC--CCCCCCCCEEECCCCCEEEEC---CCCH-HH---HHHHHH--------HH--HHHHHHHHC
T ss_conf 77837702579997432--133345747716767777517---8559-99---999996--------69--999999862
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-..++|+||.++|||++|+.. .++.+
T Consensus 172 g~~~~a~eA~~~Glv~~vv~~-~~l~~ 197 (267)
T PRK07830 172 AERLPAAEALAWGLVSAVYPA-DDFDA 197 (267)
T ss_pred CCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 898879999987997586385-89999
No 49
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.82 E-value=0.00038 Score=46.62 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCC------CCHHH-------------HHHHHHHHHHCCCCEEEEEE
Q ss_conf 8318989999999999974115769769-9993687------61467-------------89999998644873489983
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEIS-LYINSPG------GVVTA-------------GMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpG------G~v~~-------------glaIyD~i~~i~~~V~Ti~~ 108 (216)
..++.++-+.+...+..++.. .++. +.|.+-| +++.+ .+..++.|..++.||...+-
T Consensus 26 Nal~~~m~~el~~~~~~~~~d---~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (257)
T PRK05862 26 NALNDALMDELGAALAAFDAD---EGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVA 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 898999999999999999859---99359999889983146878577435661557777799999999858999899976
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 15566520000246777145544156644125666655541289999999999999999999871999899999724585
Q gi|254780272|r 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDH 188 (216)
Q Consensus 109 G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~ 188 (216)
|.|++.|.-|.++++ -|++.++++|.+-...-|.. .+.-. .. ++-+ ..|. ..-.+.+-.-.
T Consensus 103 G~a~GgG~~lal~cD--~~ia~~~a~f~~p~~~~Gl~---p~~g~-~~---~l~r--------~iG~--~~a~~llltg~ 163 (257)
T PRK05862 103 GYALGGGCELAMMCD--IIIAADTAKFGQPEIKLGVL---PGMGG-SQ---RLTR--------AVGK--AKAMDLCLTGR 163 (257)
T ss_pred CEEECCHHHHHHHCC--EEECCCCCEEECHHHCCCCC---CCCCH-HH---HHHH--------HHHH--HHHHHHHHHCC
T ss_conf 886042458877345--31304786371544204668---88459-99---9999--------9879--99999998289
Q ss_pred CCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 8888999975886446045422510
Q gi|254780272|r 189 IMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 189 ~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.++|+||+++|||++|+.+ .++.+
T Consensus 164 ~~~a~ea~~~Glv~~v~~~-~~l~~ 187 (257)
T PRK05862 164 MMDAAEAERAGLVSRVVPA-DKLLD 187 (257)
T ss_pred CCCHHHHHHCCCCEEECCH-HHHHH
T ss_conf 9869999987991476384-58999
No 50
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.81 E-value=0.0004 Score=46.49 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCC-HHH---------------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769-999368761-467---------------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPGGV-VTA---------------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpGG~-v~~---------------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++...+...+..++. +..+. +.|.+.|+. .-+ ...++..|..++.||...
T Consensus 27 al~~~~~~el~~al~~~~~---d~~vr~vvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK05809 27 ALNSETLKELDTVLDDLEN---DDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRRLENLDKPVIAA 103 (260)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9799999999999999986---8995699996689887407997476530687678999999999999998389988999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|-+-...-|..- +.-. ... +.+..|. ....+.+-.
T Consensus 104 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~--------l~~~iG~--~~a~~lllt 164 (260)
T PRK05809 104 INGFALGGGCELSMACD--IRIASEKAKFGQPEVGLGITP---GFGG----TQR--------LARIVGP--GKAKELIYT 164 (260)
T ss_pred ECCEEEECCHHHHHHCC--EEEECCCCEEECCHHCCCCCC---CCCH----HHH--------HHHHHCH--HHHHHHHHC
T ss_conf 75966665027654201--345158972865200234588---7448----999--------9998599--999999970
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-..++|+||.++||||+|+.. .++.+
T Consensus 165 g~~~~a~eA~~~Glv~~vv~~-~~l~~ 190 (260)
T PRK05809 165 GDMIKAEEALRIGLVNKVVEP-EKLME 190 (260)
T ss_pred CCCCCHHHHHHCCCCCEEECH-HHHHH
T ss_conf 982579999987997087484-68999
No 51
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=97.80 E-value=0.00022 Score=48.13 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH-------------HHHHHHHHHHCCCCEEEEEEC
Q ss_conf 318989999999999974115769769999-368------761467-------------899999986448734899831
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA-------------GMAIYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~-------------glaIyD~i~~i~~~V~Ti~~G 109 (216)
.++.++...+...+-.++. +.++...| .+. |+|+.+ ...++..|..++.||...+-|
T Consensus 27 al~~~m~~el~~a~~~~~~---d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G 103 (257)
T PRK09674 27 ALNTALLAQLVNELEAAAT---DTSISVCVITGNARFFAAGADLNEMAEKDLVATLNDPRPQLWQRIQAFNKPLIAAVNG 103 (257)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9899999999999999863---8990699997899877077652765024514455418999999998389989999889
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 55665200002467771455441566441256666555412899999999999999999998719998999997245858
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~ 189 (216)
.|.+.|+.|.++++ .|++.++++|-+-...-|... +..... .+-+ ..|. .+-.+.+-.-..
T Consensus 104 ~a~GgG~~la~~cD--~~ias~~a~f~~pe~~~Gl~p---~~g~~~----~l~~--------~iG~--~~a~~llltg~~ 164 (257)
T PRK09674 104 YALGAGCELALLCD--IVIAGENARFGLPEITLGIMP---GAGGTQ----RLIR--------SVGK--SLASQMVLTGES 164 (257)
T ss_pred EEEEEEHHHHHHCC--CCHHHHHHHHCCCCCEEEECC---CCCHHH----HHHH--------HHHH--HHHHHHHHHCCC
T ss_conf 31231457655302--102333211057203276278---844999----9999--------9759--999999985899
Q ss_pred CCHHHHHHCCCCCEEECCC
Q ss_conf 8889999758864460454
Q gi|254780272|r 190 MSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 190 lsa~EA~eyGliD~Ii~~~ 208 (216)
++|+||.++|||++|+...
T Consensus 165 ~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK09674 165 ITAQQAQQAGLVSEVFPPE 183 (257)
T ss_pred CCHHHHHHCCCEEEECCHH
T ss_conf 8799999789733565816
No 52
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.79 E-value=0.00029 Score=47.42 Aligned_cols=116 Identities=28% Similarity=0.345 Sum_probs=80.1
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCHH-----H--HHHHH---HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 99997411576976999936876146-----7--89999---99864487348998315566520000246777145544
Q gi|254780272|r 62 QLLFLEAENPQKEISLYINSPGGVVT-----A--GMAIY---DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131 (216)
Q Consensus 62 ~Ll~L~~~~~~k~I~l~INSpGG~v~-----~--glaIy---D~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~p 131 (216)
.|+-| ++.=..||--+|++||-.-. - +-+|- -.|-.++.|+.+|.+|...|=|++-++.|+ +-++++
T Consensus 89 Rlm~l-Aekf~~PvitfIDTpGA~pg~~AEerGqaeaIA~~l~~m~~l~VPiIsvIiGEGgSGGALAl~~~D--~VlMlE 165 (256)
T PRK12319 89 RLMKQ-AEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD--QVWMLE 165 (256)
T ss_pred HHHHH-HHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCC--EEEEEC
T ss_conf 99999-998099879996079867885321038999999999999769998799997687663210111257--045445
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 1566441256666555412899999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 132 ns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
||.+-.-.|.+.+ + +-++.-.+ .++-.+.| =++|++-+++|+||+||..
T Consensus 166 ~a~YSVISPEGcA----S---ILwrd~~k----------------a~eAAeal----klTa~dL~~lgiID~II~E 214 (256)
T PRK12319 166 NTMYAVLSPEGFA----S---ILWKDGSR----------------ATEAAELM----KITAGELYQMGIVDKVIPE 214 (256)
T ss_pred CEEEEECCHHHHH----H---HHHCCHHH----------------HHHHHHHC----CCCHHHHHHCCCCCEEEEC
T ss_conf 7189965888878----8---86167344----------------59999983----4799999868997188508
No 53
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.78 E-value=0.00032 Score=47.15 Aligned_cols=116 Identities=23% Similarity=0.281 Sum_probs=80.4
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCHH-------HHHHHHHH---HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 99997411576976999936876146-------78999999---864487348998315566520000246777145544
Q gi|254780272|r 62 QLLFLEAENPQKEISLYINSPGGVVT-------AGMAIYDT---MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131 (216)
Q Consensus 62 ~Ll~L~~~~~~k~I~l~INSpGG~v~-------~glaIyD~---i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~p 131 (216)
.|+-| ++.=..||--+|++||-.-- -+-||-.. |-.++.||.++++|--.|=|++-++.|+ +.+++.
T Consensus 145 Rlm~l-Aekf~~Pvit~IDTpGAypG~~AEerGQaeAIA~nL~~m~~L~vPiisvViGEGGSGGALAl~vaD--rvlMle 221 (322)
T CHL00198 145 RLMEH-ANRFGLPILTFIDTPGAWAGLKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGD--SILMLE 221 (322)
T ss_pred HHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC--EEEEEC
T ss_conf 99999-997099779983289867887633158799999999999679998799997688762332201467--466452
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 1566441256666555412899999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 132 NARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 132 ns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
||.+..-.|.+.+. +-++.-.+. ++-.+.| =++|++-+++|+||+||..
T Consensus 222 ~s~YSVISPEGcAs-------ILwkd~~~a----------------~eAAeal----kiTA~dL~~lgIID~II~E 270 (322)
T CHL00198 222 YAVYTVATPEACAA-------ILWKDSKKS----------------AEAAEAL----KITSEDLLVLGIIDEILPE 270 (322)
T ss_pred CEEEEECCHHHHHH-------HHCCCHHHH----------------HHHHHHC----CCCHHHHHHCCCCCEECCC
T ss_conf 51788548888778-------733680247----------------9999870----1169999977997276368
No 54
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=97.77 E-value=0.00017 Score=48.86 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCCHHHHHH-------------------------HHHHHHHCCCCE
Q ss_conf 318989999999999974115769769-999368761467899-------------------------999986448734
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPGGVVTAGMA-------------------------IYDTMQFIKPPI 103 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpGG~v~~gla-------------------------IyD~i~~i~~~V 103 (216)
.++.++-..+...+..++..+ ++. +.|.+.|....+|.- ++..|+.++.||
T Consensus 33 Als~~m~~el~~~~~~~~~d~---~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 109 (270)
T PRK08258 33 PLTFDSYAELRDLFRALVYAD---DVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLDFTRMTGDLVKAMRACPQPV 109 (270)
T ss_pred CCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCCHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999999999999999885589---95499996799865066587877340013786888999999999999998589998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
...+-|.|.+.|.-|.++++ -|++.++++|-+-.+..|..+. ++-. ...+ .+.-|. .+-.+.
T Consensus 110 Iaav~G~a~GgG~~la~~cD--~~ia~~~a~f~~p~~~iGl~~~--~~g~-~~~l-----------~r~vG~--~~a~~l 171 (270)
T PRK08258 110 IAAVDGVCAGAGAILAMASD--LRLATPSAKTAFLFTRVGLAGA--DMGA-CALL-----------PRIIGQ--GRASEL 171 (270)
T ss_pred EEEECCEEEHHHHHHHHHCC--CCCCCCCCEECCCCCEEEECCC--CCHH-HHHH-----------HHHHHH--HHHHHH
T ss_conf 99987875467699998526--2414666612166552511577--7217-8688-----------888559--999987
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 24585888899997588644604542251
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+-.-..++|+||.++|||++|+.. .++.
T Consensus 172 lltG~~~~A~eA~~~Glv~~vv~~-~~l~ 199 (270)
T PRK08258 172 LYTGRSMSAEEGERWGFFNRLVEP-AALL 199 (270)
T ss_pred HHHCCCCCHHHHHHCCCCCEECCH-HHHH
T ss_conf 872896859999986983065187-8999
No 55
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.77 E-value=0.00029 Score=47.36 Aligned_cols=111 Identities=23% Similarity=0.347 Sum_probs=79.4
Q ss_pred HCCCCCCEEEEEECCCCCHH-------HHHHHHHH---HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 11576976999936876146-------78999999---864487348998315566520000246777145544156644
Q gi|254780272|r 68 AENPQKEISLYINSPGGVVT-------AGMAIYDT---MQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137 (216)
Q Consensus 68 ~~~~~k~I~l~INSpGG~v~-------~glaIyD~---i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMi 137 (216)
++.=..||--+|++||-.-- -+-+|-.. |-.++.|+.+|.+|--.|=|++-++.|+ +.+++.||.+.+
T Consensus 146 Aekf~~Pvit~IDTpGAypG~~AEerGqaeAIA~~l~~m~~l~vPiisviiGEGgSGGALal~~~d--~v~Mle~a~YSV 223 (318)
T PRK05724 146 AERFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGD--RVLMLEHSTYSV 223 (318)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCC--EEEEECCEEEEE
T ss_conf 997099779993489767898763138899999999999689998799997788744477772468--588844718885
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 1256666555412899999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 138 Hqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
-.|.+.+ + +-++.-. ..++-.+.| =+||++-+++|+||+||..
T Consensus 224 iSPEgcA----s---ILwkd~~----------------~a~eAAe~l----kiTa~dL~~lgiiD~II~E 266 (318)
T PRK05724 224 ISPEGCA----S---ILWKDAA----------------KAPEAAEAM----KITAQDLKELGIIDEIIPE 266 (318)
T ss_pred CCHHHHH----H---HHHCCHH----------------HHHHHHHHC----CCCHHHHHHCCCCCEECCC
T ss_conf 4877766----8---7625886----------------759999975----8999999867997165469
No 56
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.77 E-value=0.0002 Score=48.46 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHH--------------------------------------
Q ss_conf 318989999999999974115769769999-36876146789--------------------------------------
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGM-------------------------------------- 90 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~gl-------------------------------------- 90 (216)
.++.++...+...+..++. +.+|.+.| .+.|...-+|.
T Consensus 27 Al~~~m~~eL~~al~~~~~---D~~vrvvVLtG~G~~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 103 (284)
T PRK08290 27 AQNRGMLYELDAAFTRAEA---DDAVRVIVLAGAGKHFSAGHDLGSPGRERRPGPDHPTLWWNGATKPGVEFRYAREWEY 103 (284)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999964---9791799996699962547161535531245643102332011024578888898999
Q ss_pred --HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --999998644873489983155665200002467771455441566441256666555412899999999999999999
Q gi|254780272|r 91 --AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEI 168 (216)
Q Consensus 91 --aIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i 168 (216)
.+...|+.++.||...+-|.|.+.|.-|.++++ -|++.++++|-.-...-|..|- ..+..-+
T Consensus 104 ~l~~~~~i~~~~KPvIAaV~G~a~GgG~~lalacD--i~iAse~A~F~~p~~~lGl~g~--------~~~~~p~------ 167 (284)
T PRK08290 104 YLGYCRRWRDLPKPTIAQVQGACIAGGLMLAWPCD--LIVASDDAFFSDPVVRMGIPGV--------EYFAHPW------ 167 (284)
T ss_pred HHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCC--EEEECCCCEEECCCCCCCCCCH--------HHHHHHH------
T ss_conf 99999998529998899986875212068785377--8997399899775305451423--------5778888------
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 9987199989999972458588889999758864460454225101
Q gi|254780272|r 169 YVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214 (216)
Q Consensus 169 ~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~~ 214 (216)
.-| ..+-.+.+-.-..++|+||.++|||++|+. ..++.+.
T Consensus 168 ---~lG--~~rA~ellltg~~i~A~eA~~~GLVn~Vvp-~~~L~~~ 207 (284)
T PRK08290 168 ---ELG--PRKAKELLFTGDRLSADEAHRLGMVNRVVP-RDELEAA 207 (284)
T ss_pred ---HHH--HHHHHHHHHHCCCCCHHHHHHCCCCCEECC-HHHHHHH
T ss_conf ---860--999999998299757999997698033428-8899999
No 57
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.76 E-value=0.00033 Score=47.07 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC-------CCHHH---------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769999-3687-------61467---------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG-------GVVTA---------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG-------G~v~~---------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++...+...|..++. ++++...| .+-| +|+.. .-.++..|..++.||...
T Consensus 28 al~~~m~~~l~~al~~~~~---d~~vr~vvl~g~G~~~F~aG~Dl~e~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 104 (261)
T PRK07657 28 ALSLALLEELQNILTQINE---EANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAA 104 (261)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899999999999999975---8996499996699876428998476603887789999999999999998299989999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|.+-...-|..-...- ...+. +. .|. .+-.+.+--
T Consensus 105 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~----~~~l~---r~--------iG~--~~a~~lllt 165 (261)
T PRK07657 105 INGIALGGGLELALACD--FRIAAESASLGLTETTLAIIPGAGG----TQRLP---RL--------IGV--GRAKELIYT 165 (261)
T ss_pred ECCEEEEHHHHHHHHCC--CCCCCCCCEEEEEEEEECCCCCCCH----HHHHH---HH--------HHH--HHHHHHHHC
T ss_conf 77966403189988446--0301255404420000467887468----99999---98--------669--999999980
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-..++|+||+++|+||+|+.+ .++.+
T Consensus 166 g~~~~aeeA~~~Glv~~v~~~-~~l~~ 191 (261)
T PRK07657 166 GRRISAQEAKEIGLVEFVVPA-HLLEE 191 (261)
T ss_pred CCCCCHHHHHHCCCHHEECCH-HHHHH
T ss_conf 999889999977984037583-68999
No 58
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=97.74 E-value=0.00059 Score=45.41 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=88.6
Q ss_pred EEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHH--------------------HHHHHHHH
Q ss_conf 7998783-----18989999999999974115769769999-3687614678--------------------99999986
Q gi|254780272|r 44 IVFVTGQ-----IEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAG--------------------MAIYDTMQ 97 (216)
Q Consensus 44 iifl~g~-----I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~g--------------------laIyD~i~ 97 (216)
+|-|+-| ++.++-..+...|-.++ .+++|...| .+.|+..-+| ...+..+.
T Consensus 15 ~ItlNrPek~Nals~~~~~~l~~al~~~~---~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (248)
T PRK06023 15 VIRFNRPEKKNAITRAMYAAMAKALKAGD---ADDAIRAHVFLGVPGAFSSGNDMQDFMAAAMGGTSFGSEILDFLIALA 91 (248)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99974888889989999999999999985---489936999978998660898868886412355145799999999999
Q ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 44873489983155665200002467771455441566441256666555412899999999999999999998719998
Q gi|254780272|r 98 FIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY 177 (216)
Q Consensus 98 ~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~ 177 (216)
.++.||...+-|.|.+.|.-|.++++ .|++.++++|-.-...-|.. .+..... .+-+ ..|.
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~p~~~~Gl~---p~~g~~~-~l~r-----------~iG~-- 152 (248)
T PRK06023 92 ETEKPIVSGVDGLAIGIGTTIHLHCD--LTFATPRSLFRTPFVDLGLV---PEAGSSL-LAPR-----------LMGH-- 152 (248)
T ss_pred HCCCCEEEEEECEEEHHHHHHHHCCC--EEEECCCCEEECHHCCEEEC---CCCCHHH-HHHH-----------HHHH--
T ss_conf 58998999981533014689972346--45634786382320267348---7652999-9999-----------9749--
Q ss_pred HHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 99999724585888899997588644604542251
Q gi|254780272|r 178 EEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 178 e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.+-.+.+-.-..++|+||+++|||++|+.. .++.
T Consensus 153 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~ 186 (248)
T PRK06023 153 QRAFALLALGEGFSAEAAQEAGLIYKIVDE-EALE 186 (248)
T ss_pred HHHHHHHHCCCCCCHHHHHHCCCCCEECCH-HHHH
T ss_conf 999999983994109998168991333586-8999
No 59
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=97.74 E-value=0.00028 Score=47.48 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCHHHHH------------------------HHHHHHHHCCCCE
Q ss_conf 831898999999999997411576976999-936876146789------------------------9999986448734
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLY-INSPGGVVTAGM------------------------AIYDTMQFIKPPI 103 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~-INSpGG~v~~gl------------------------aIyD~i~~i~~~V 103 (216)
..++.++-..+...|-.++. +.++... |.+.|+..-+|. .++..+..++.||
T Consensus 25 Nal~~~m~~el~~al~~~~~---d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 101 (259)
T PRK07511 25 NALHPDMYAAGIEALATAER---DPSIRAVVLTGADGFFCAGGNLNRLLENRAKPPSVQAASIDLLHDWIRAIRAFPKPV 101 (259)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99799999999999999976---899659999899996236436898863424898899999999999999998399989
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
...+-|.|.+-|+-|.++++ .|++.++++|.+-...-|..- +.-... .+ .+..| ..+-.+.
T Consensus 102 Iaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~p~~~~Gl~p---~~g~~~----~l--------~r~iG--~~~A~~l 162 (259)
T PRK07511 102 IAAVEGAAAGAGFSLALACD--LLVAADDAKFVMAYVKVGLTP---DGGGSW----FL--------ARALP--RQLATEI 162 (259)
T ss_pred EEEECCCEEHHHHHHHHHCC--CCCCCCCCEEECCCCCEEECC---CCCHHH----HH--------HHHHC--HHHHHHH
T ss_conf 99965703113389998327--265454556745766630168---876999----99--------99968--9999999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 24585888899997588644604542
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
+-.-..++|+||.++|||++|+.+..
T Consensus 163 lltg~~~~a~eA~~~Glv~~vv~~~~ 188 (259)
T PRK07511 163 LLEGKPISAERLHALGVVNRLAKPGA 188 (259)
T ss_pred HHHCCCCCHHHHHHCCCCCEECCCHH
T ss_conf 98489997999988899657438118
No 60
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.72 E-value=0.00059 Score=45.44 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHH---------------------------HHHHHHHHHCC
Q ss_conf 8318989999999999974115769769999-3687614678---------------------------99999986448
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAG---------------------------MAIYDTMQFIK 100 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~g---------------------------laIyD~i~~i~ 100 (216)
..++.++...+...+--++. +.+|...| .+.|...-+| ..++..+..++
T Consensus 26 Nal~~~m~~~l~~al~~~~~---d~~vrvvVltg~g~~FcaG~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (257)
T PRK07110 26 NAFSDELVRQLHGAFDTIAQ---DPRCKVVILTGYPNYFATGGTQEGLLSLSEGKGTFTDYKTNIEHEYANLYSLALNCP 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99899999999999999976---899169999889986525666788875441553114678889999999999998199
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 73489983155665200002467771455441566441256666555412899999999999999999998719998999
Q gi|254780272|r 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 101 ~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.||...+-|.|.+.|+-|..+++ .|++.++++|-+-...-|... +.-. ...+.+. -|. .+-
T Consensus 103 kPvIaavnG~a~GgG~~lal~cD--~ria~~~a~f~~pe~~lGl~p---~~g~----~~~l~~~--------vG~--~~a 163 (257)
T PRK07110 103 IPVIAAMQGHAIGGGFVMGLYAD--FVVLSEESVYTTNFMKYGFTP---GMGA----TAILPEK--------LGY--YLG 163 (257)
T ss_pred CCEEEEECCHHHHHHHHHHHCCC--EEEECCCCEEECCCCCCCCCC---CCCH----HHHHHHH--------HHH--HHH
T ss_conf 98999978788577689973268--789869977977500567597---7439----9999998--------669--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 997245858888999975886446045422510
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.+.+-.-..++|+||.++|||++|+.. .++.+
T Consensus 164 ~~llltg~~i~a~eA~~~Glv~~vvp~-~~l~~ 195 (257)
T PRK07110 164 QEMLLTARSYRGAELQKRGVPFPVLPR-AEVLE 195 (257)
T ss_pred HHHHHCCCCCCHHHHHHCCCCCEEECH-HHHHH
T ss_conf 999984997689999974987467786-38999
No 61
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.72 E-value=0.0011 Score=43.84 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCC-------CCHHH---------------HHHHHHHHHHCCCCEEEE
Q ss_conf 3189899999999999741157697699-993687-------61467---------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPG-------GVVTA---------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpG-------G~v~~---------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++-..+...+..++ .++.|.. .|-+-| +++.. .-.++..|..++.||...
T Consensus 25 al~~~m~~~l~~~l~~~~---~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaa 101 (258)
T PRK09076 25 TWTADSLQALKQLVLELN---ANKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAA 101 (258)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 699999999999999996---29995599996589986406702776604784458999999999999999589999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|.+-...-|......-. ..+. +. .|. .+-.+.+-.
T Consensus 102 v~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~Gl~p~~g~~----~~l~---r~--------iG~--~~A~~lllt 162 (258)
T PRK09076 102 INGYAMGGGLECALACD--IRIAEEQAQMALPEASVGLLPCAGGT----QNLP---WL--------VGE--GWAKRMILC 162 (258)
T ss_pred ECCEEEEHHHHHHHHCC--EEEECCCCCCCCCHHEECCCCCCCHH----HHHH---HH--------HHH--HHHHHHHHC
T ss_conf 89907643499986067--55431565422612101668886689----9999---99--------729--999999864
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 85888899997588644604542251
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
-..++|+||+++|||++|+.. .++.
T Consensus 163 g~~~~a~eA~~~Glv~~vv~~-~~l~ 187 (258)
T PRK09076 163 GERVDAATALRIGLVEEVVEK-GEAR 187 (258)
T ss_pred CCCCCHHHHHHCCCCCEECCC-HHHH
T ss_conf 996829999876990235590-0799
No 62
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.71 E-value=0.00055 Score=45.61 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCC-------CHHH--------------HHHHHHHHHHCCCCEEEEE
Q ss_conf 31898999999999997411576976999936-876-------1467--------------8999999864487348998
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINS-PGG-------VVTA--------------GMAIYDTMQFIKPPISTFC 107 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS-pGG-------~v~~--------------glaIyD~i~~i~~~V~Ti~ 107 (216)
.++.++-..+...+-.++ +++ ...+.|.+ .|| ++.+ .-.+...++.++.||...+
T Consensus 27 al~~~m~~~l~~al~~~~--~~~-~r~vvl~~~~g~~~F~AG~Dl~e~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 103 (261)
T PRK11423 27 ALSKVLIDDLMQALSDLN--RPE-IRVVILRAPSGSKVWSAGHDIHELPAGGRDPLSYDDPLRQILRMIQKFPKPVIAMV 103 (261)
T ss_pred CCCHHHHHHHHHHHHHHH--CCC-CEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989999999999999985--799-87999965888754237866545322576667787799999999994899899996
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 31556652000024677714554415664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
-|.|.+.|+-|.++++ -|++.++++|.+-...-|......-. . .+ .+..| ..+-.+.+-.-
T Consensus 104 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~~~~~~Gl~~~~~~~---~----~l--------~~~iG--~~~A~ellltg 164 (261)
T PRK11423 104 EGSVWGGAFDLVMSCD--LIIAASTSTFAMTPANLGVPYNLSGI---L----NF--------TNDAG--IHIVKEMFFTA 164 (261)
T ss_pred CCHHHHCHHHHHHHHH--HHCCCCCCEEECCCHHCCCCCCCCHH---H----HH--------HHHHH--HHHHHHHHHCC
T ss_conf 7733214089999875--42101162695762002777685389---9----99--------99976--99999988628
Q ss_pred CCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 58888999975886446045422510
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.+++|+||.++|||++|+.. .++.+
T Consensus 165 ~~i~a~eA~~~Glv~~vv~~-~~l~~ 189 (261)
T PRK11423 165 SPITAERALAVGILNHLVEV-EELED 189 (261)
T ss_pred CCCCHHHHHHCCCCEEECCH-HHHHH
T ss_conf 96739999987984075485-79999
No 63
>PRK07629 consensus
Probab=97.70 E-value=0.00029 Score=47.38 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHH------------------HHHHHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769999-368------76146------------------78999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVT------------------AGMAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~------------------~glaIyD~i~~i~~~V~ 104 (216)
.++.++-..+...+..++. +.+|.+.| .+- |+++. ....++..|..++.||.
T Consensus 27 al~~~m~~el~~a~~~~~~---d~~vrvvvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 103 (261)
T PRK07629 27 AFNETMIAELTAAFRALDA---DDDVRAVVLAARGPAFCAGADLNWMKRMAGYSDDENRADARKLARMLRTIYECPKPTI 103 (261)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9799999999999999962---9991699997799821467670888851136725567779999999999995899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|.-|.++++ -|++.++++|.+....-|..... . ...+. +..| ...-.+.+
T Consensus 104 aav~G~a~GgG~~lal~~D--~ria~~~a~f~~p~~~~Gl~p~~--~---~~~~~-----------r~iG--~~~a~~ll 163 (261)
T PRK07629 104 ARVHGDAYAGGMGLVAACD--IAVAADTAKFCLSEVRLGLIPAT--I---SPYVI-----------RAMG--ERAARRYF 163 (261)
T ss_pred EEECCEEECCHHHHHHHCC--EEECCCCCEEECHHCCCCCCCCC--H---HHHHH-----------HHHC--HHHHHHHH
T ss_conf 9978954436079977334--21314787575510344617775--5---88999-----------9978--99999999
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 45858888999975886446045422510
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-.-..++|+||.++|||++|+.+ .++.+
T Consensus 164 ltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 191 (261)
T PRK07629 164 LTAERFDAAEALRLGFVHEVVPA-DALDA 191 (261)
T ss_pred HHCCCCCHHHHHHCCCCEEECCH-HHHHH
T ss_conf 86872269999977986187386-79999
No 64
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.70 E-value=0.00042 Score=46.38 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH------------------HHHHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769999-368------761467------------------8999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA------------------GMAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~------------------glaIyD~i~~i~~~V~ 104 (216)
.++.++...+...+..++.. .++...| .+. |+|+.. .-.+++.|..++.||.
T Consensus 28 Al~~~m~~el~~a~~~~~~d---~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 104 (262)
T PRK07468 28 ALSARMIAELTTAALRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMREQMNADRATRIEEARKLALMLKALNDLPKPLI 104 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 98999999999999998658---991699997899860478877877641136766777888799999999984899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|.-|.++++ .|++.++++|-+-...-|..... .. ...+.+ -| ..+-.+.+
T Consensus 105 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~--~~--~~~l~r------------iG--~~~A~ell 164 (262)
T PRK07468 105 GRIQGQAFGGGVGLISVCD--VAIGVSGARFGLTETRLGLIPAT--IG--PYVVAR------------MG--EANARRVF 164 (262)
T ss_pred EEECCEEEECCCEEECCCC--EEEECCCCCCCCHHHHCCCCCCC--CH--HHHHHH------------HH--HHHHHHHH
T ss_conf 9974767555540204576--78973787544475305567784--38--899988------------62--99999998
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 4585888899997588644604542251
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
-.-.-++|+||.++|||++|+.. .++.
T Consensus 165 ltg~~i~a~eA~~~GlV~~vv~~-~~l~ 191 (262)
T PRK07468 165 MSARLFDAEEAVRLGLLARVVPA-ERLD 191 (262)
T ss_pred HCCCCCCHHHHHHCCCCCEEECH-HHHH
T ss_conf 50882579999976987165288-7999
No 65
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.70 E-value=0.0013 Score=43.36 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCC-HHHHH-----------------------HHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769999-368761-46789-----------------------99999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGV-VTAGM-----------------------AIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~-v~~gl-----------------------aIyD~i~~i~~~V~ 104 (216)
.++.++-..+...+-.++. +.++...| .+.|+. .-+|. ..+..|..++.||.
T Consensus 34 als~~~~~~l~~~l~~~~~---d~~vr~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 110 (269)
T PRK06127 34 AMSLDMWEALPQALAAAED---DDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTI 110 (269)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9899999999999999863---8991599996899774136864577752247867889999999999999995899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|.-|.++++ .|++.++++|.+-...-|......-. . . +.+..|. .+-.+.+
T Consensus 111 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---~----~--------l~~~iG~--~~a~~ll 171 (269)
T PRK06127 111 ACIRGYCIGGGMGIALACD--IRIAAEDSRFGIPAARLGLGYGYDGV---K----N--------LVDLVGP--SAAKDLF 171 (269)
T ss_pred EEECCCCCCCCHHHHCCCC--EEEECCCCEEECCHHHCCCCCCCCHH---H----H--------HHHHHCH--HHHHHHH
T ss_conf 9976812026413320676--67756995797931640968895399---9----9--------9988688--9999998
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 45858888999975886446045422510
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-.-..++|+||.++|||++|+.+ .++.+
T Consensus 172 ltg~~i~a~eA~~~Glv~~vv~~-~~l~~ 199 (269)
T PRK06127 172 YTARRFDAAEALRIGLVHRVTAA-DDLET 199 (269)
T ss_pred HHCCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 74798889999988992475087-69999
No 66
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.0004 Score=46.51 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCC------CCHHH----------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769-9993687------61467----------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPG------GVVTA----------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpG------G~v~~----------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++-..+...|-.++ ++ ++. +.|.+.| +|+.. .-.++..+..++.||...
T Consensus 29 al~~~m~~~l~~~l~~~~--d~--~~r~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaa 104 (260)
T PRK07659 29 ALDEPMLKELLEALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDRVMNTISEIVVTLYTMPKLVISA 104 (260)
T ss_pred CCCHHHHHHHHHHHHHHH--CC--CCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 989999999999999975--79--98699997579843888676887535786789999999999999999689989999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 831556652000024677714554415664412566665---55412899999999999999999998719998999997
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS---GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~---G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
+-|.|.+.|.-|.++++ .|++.++++|.+....-|.. |-.. . +.+..|. .+-.+.
T Consensus 105 v~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~----------~--------l~r~iG~--~~a~el 162 (260)
T PRK07659 105 IHGPAAGLGLSLALTAD--YVMADISAKLAMNFIGIGLIPDGGGHF----------F--------LQKRVGE--NKAKQI 162 (260)
T ss_pred ECCEEEECHHHHHHHCC--CCCCCCCCCEECCCCCEEECCCCCHHH----------H--------HHHHHHH--HHHHHH
T ss_conf 63706641349987427--455567763516636566577863999----------9--------9999839--999999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 245858888999975886446045
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
+-.-..++|+||.++|||++|+..
T Consensus 163 lltg~~~~A~eA~~~GlV~~vvp~ 186 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVFGE 186 (260)
T ss_pred HHCCCCCCHHHHHHCCCCCEECCC
T ss_conf 982997569999877972344391
No 67
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.00054 Score=45.69 Aligned_cols=142 Identities=17% Similarity=0.233 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCC-------CHHH----------------HHHHHHHHHHCCCCEEE
Q ss_conf 3189899999999999741157697699-9936876-------1467----------------89999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGG-------VVTA----------------GMAIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG-------~v~~----------------glaIyD~i~~i~~~V~T 105 (216)
.++.++-..+...|-.++. +.++.. .|.+-|| |+.. ...+++.+..++.||..
T Consensus 31 al~~~m~~el~~~l~~~~~---d~~vr~vVl~gag~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 107 (262)
T PRK06144 31 AMTWAMYEGLAAICEEIAA---DPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIA 107 (262)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999999999863---8991499995799862534765787614577045789999999999999958998899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|.+.|.-|.++++ .|++.++++|-+--.. ..|...+... +.+ +.+..|.. ...+.+-
T Consensus 108 av~G~a~GgG~~lal~cD--~~ias~~a~f~~p~~~--~lG~~~~~~~----~~~--------l~~~iG~~--~A~~l~l 169 (262)
T PRK06144 108 AIAGACVGGGAAIAAACD--LRIATPSARFGFPIAR--TLGNCLSMSN----LAR--------LVALLGAA--RVKDMLF 169 (262)
T ss_pred EECCEEEECCCEEHHCCC--EEEECCCCEEECCEEE--ECCCCCCHHH----HHH--------HHHHHCHH--HHHHHHH
T ss_conf 975878607222011077--7677899789754345--1477777148----999--------99986899--9999975
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 5858888999975886446045422510
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.-..++|+||.++|||++|+.. .++.+
T Consensus 170 tg~~~~a~eA~~~Glv~~vv~~-~~l~~ 196 (262)
T PRK06144 170 TARLLEAEEALAAGLLNEVVPD-AALDA 196 (262)
T ss_pred CCCEECHHHHHHCCCHHHCCCH-HHHHH
T ss_conf 0887079999977984612490-68999
No 68
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=97.65 E-value=0.0027 Score=41.24 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 783189899999999999741157697699993687----------6146789999998644873489983155665200
Q gi|254780272|r 48 TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117 (216)
Q Consensus 48 ~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG----------G~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~asl 117 (216)
+|.++.+.+... ++++-|-.. -+-||-.++|+|| |-+..|-.+..++...+.|+.||.+|.+++.|.+
T Consensus 305 ~G~l~~~aa~Ka-arfi~lcd~-~~iPlv~lvDtpGf~~G~~~E~~G~i~~ga~~~~a~a~~~vP~itvi~rk~~G~~~~ 382 (487)
T pfam01039 305 AGVLFIDSADKA-ARFIRLCDA-FNIPLVILVDVPGFLPGTDQEYGGILKHGAKLLYALAEATVPKITVIPRKAYGGAYV 382 (487)
T ss_pred CCCCCHHHHHHH-HHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 675304558999-999998633-399769998489887788999746899999999999855898899997876455766
Q ss_pred CCCCCC--CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHCCCCCC
Q ss_conf 002467--771455441566441256666555412899999999999999999998719998-----9999972458588
Q gi|254780272|r 118 LLSAGE--KGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTY-----EEVEKTLDRDHIM 190 (216)
Q Consensus 118 Il~aG~--~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~-----e~i~~~~~rD~~l 190 (216)
.+++.. ....++.|++++=.-.|.+.+. + .+.+++.... .-+... +++++. .+...
T Consensus 383 am~g~~~~~d~~~awP~a~~~vm~~egav~-----i-~~~~~~~~a~---------~~~~~~~~~~~~~~~~~--~~~~~ 445 (487)
T pfam01039 383 VMDSKINGADAVAAWPTARIAVMGPEGAVE-----I-KFRKELAAAT---------MRYKDLEALRAQKIAEY--EEQLS 445 (487)
T ss_pred HHCCCCCCCCEEEECCCCCEECCCHHHHHH-----H-HHHHHHHHCC---------CCCCCHHHHHHHHHHHH--HHHHC
T ss_conf 415656788779997988362379999999-----9-8788886443---------46869899999999999--98619
Q ss_pred CHHHHHHCCCCCEEECCCC
Q ss_conf 8899997588644604542
Q gi|254780272|r 191 SASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~~ 209 (216)
++-.+.+.|++|.||+++.
T Consensus 446 ~~~~~a~~~~vD~vIdP~~ 464 (487)
T pfam01039 446 PPYVAAARGFADLVIDPGR 464 (487)
T ss_pred CHHHHHHHCCCCCCCCHHH
T ss_conf 9999987067587188899
No 69
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=97.62 E-value=0.0008 Score=44.59 Aligned_cols=141 Identities=19% Similarity=0.315 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH--------------------HHHHHHHHHHCCCCEEEEEE
Q ss_conf 8318989999999999974115769769999368761467--------------------89999998644873489983
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTA--------------------GMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~--------------------glaIyD~i~~i~~~V~Ti~~ 108 (216)
-.++.++-..+...+--. + .+..+ +.|.+.|+..-+ +..++..+..++.||..-+-
T Consensus 24 Nal~~~~~~~l~~al~~~--~-~d~~v-vvltg~g~~FsAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~ 99 (229)
T PRK06213 24 NAISPDMIDALNAALDQA--E-DDRAA-VVLTGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACT 99 (229)
T ss_pred CCCCHHHHHHHHHHHHHH--C-CCCEE-EEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 899999999999999975--3-59829-9998899862178767766017276899999899999999957999999987
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 1556652000024677714554415-664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 109 GQAASMGSLLLSAGEKGMRFALPNA-RILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 109 G~aaS~aslIl~aG~~g~R~~~pns-~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
|.|.+.|..|..+++ .|++.+++ ++-+.....|..-...-+. .+..++-...+ .+.+-..
T Consensus 100 G~a~GgG~~lala~D--~ria~~~~~~~~~~e~~iGl~~~~~g~~-------~~~~~~~~~~~----------~~~~ltg 160 (229)
T PRK06213 100 GHAIAKGAFLLLSGD--YRIGVHGPFKIGLNEVAIGMTMPHAGIE-------LARDRLTPSAF----------QRSVINA 160 (229)
T ss_pred CCCCHHHHHHHHHCC--EEEEECCCCCCCCCCCEECCCCCHHHHH-------HHHHHHHHHHH----------HHHHHCC
T ss_conf 865119989987188--8999668612168623268888655999-------99998899999----------9999849
Q ss_pred CCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 58888999975886446045422510
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
..++|+||+++||||+|+.+ .++.+
T Consensus 161 ~~~~a~eA~~~GlV~~vv~~-~~l~~ 185 (229)
T PRK06213 161 EMFDPETAVAAGFLDEVVPP-EQLLT 185 (229)
T ss_pred CCCCHHHHHHCCCCCEEECH-HHHHH
T ss_conf 97509999987986167688-89999
No 70
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.58 E-value=0.0021 Score=41.94 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC-------CCHHH-------------------HHHHHHHHHHCCCC
Q ss_conf 318989999999999974115769769999-3687-------61467-------------------89999998644873
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG-------GVVTA-------------------GMAIYDTMQFIKPP 102 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG-------G~v~~-------------------glaIyD~i~~i~~~ 102 (216)
.++.++-..+...+-.++. +.+|...| .+-| +++.+ +..+...|..++.|
T Consensus 26 al~~~~~~~l~~~l~~~~~---d~~ir~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 102 (260)
T PRK05980 26 ALSYALIDRLMARLDAIEV---DESVRAVILTGAGERAFSAGADIHEFSASVAAGPDVALRDFVRRGQTMTARLEAFPKP 102 (260)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999862---9993399996699834435767676412101472478999999999999999978999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 48998315566520000246777145544156644125666655541289999999999999999999871999899999
Q gi|254780272|r 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 103 V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
|...+-|.|.+.|.-|.++++ .|++.++++|..-...-|... +.-... .+ .+..|. .+-.+
T Consensus 103 vIa~v~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~~Gl~p---~~g~~~-~l-----------~r~iG~--~~A~~ 163 (260)
T PRK05980 103 VIAAVNGLAFGGGCEITEAVH--LAIASERARFAKPEIKLAMPP---TFGGTQ-RL-----------PRLAGR--KRALE 163 (260)
T ss_pred EEEEECCEEEECCCHHHHHCC--CCCCCCCCEECCCCCCEEECC---CCCHHH-HH-----------HHHHHH--HHHHH
T ss_conf 899977888777535442041--301477783537525175387---736799-99-----------999649--99999
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 724585888899997588644604542251
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.+-.-.-++|+||.++||||+|+.+ .++.
T Consensus 164 ~~l~g~~i~a~eA~~~Glv~~vv~~-~~l~ 192 (260)
T PRK05980 164 LLLTGDAFSAQRALEIGLVNAVVPH-DELI 192 (260)
T ss_pred HHHCCCCCCHHHHHHCCCCCEEECH-HHHH
T ss_conf 9980998689999876997165286-6899
No 71
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=97.58 E-value=0.0016 Score=42.68 Aligned_cols=135 Identities=18% Similarity=0.265 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCCHHHHH----------------------------HHHHHHHHCC
Q ss_conf 3189899999999999741157697699-9936876146789----------------------------9999986448
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGGVVTAGM----------------------------AIYDTMQFIK 100 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG~v~~gl----------------------------aIyD~i~~i~ 100 (216)
.++.++-..+...+--++ .+.+|.. .|.+.|+..-+|. .+...++.++
T Consensus 26 al~~~m~~eL~~~~~~~~---~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (262)
T PRK07509 26 ALDFAMFEELIATIKRLK---KDRGIRAVILSGEGGAFCAGLDVKSVASSPKNAVKLLFKRLPGNANLAQRVSLGWRRLP 102 (262)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 989999999999999997---58995699998899842346678988438810467898860445689999999986099
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 73489983155665200002467771455441566441256666555412899999999999999999998719998999
Q gi|254780272|r 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 101 ~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.||..-+-|.|.+.|.-|.++++ .|++.++++|-+-...-|.. .+.-... .+.+. .|. ..-
T Consensus 103 kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~~~Gl~---p~~g~~~----~l~~~--------vG~--~~A 163 (262)
T PRK07509 103 VPVIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEAKWGLV---PDMAGTV----SLRGL--------VRK--DVA 163 (262)
T ss_pred CCEEEEEECEEEECCCEEECCCC--EEEECCCCEEECCCCCCCCC---CCCCHHH----HHHHH--------HHH--HHH
T ss_conf 98899980768886402111465--55636986895653041689---8855999----99999--------999--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 99724585888899997588644604
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~ 206 (216)
.+.+-.-..++|+||+++|||++|++
T Consensus 164 ~~l~ltg~~~~a~eA~~~Glv~~v~e 189 (262)
T PRK07509 164 RELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HHHHHCCCCCCHHHHHHCCCCCEECC
T ss_conf 99997089573999988899503671
No 72
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.57 E-value=0.0006 Score=45.40 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-C-------CCHHH--------------HHHHHHHHHHCCCCEEEEE
Q ss_conf 318989999999999974115769769999368-7-------61467--------------8999999864487348998
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINSP-G-------GVVTA--------------GMAIYDTMQFIKPPISTFC 107 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSp-G-------G~v~~--------------glaIyD~i~~i~~~V~Ti~ 107 (216)
.++.++-..+...|..++ .+.++...|=+. | +|... ...+++.|+.++.||...+
T Consensus 25 Al~~~~~~~l~~al~~~~---~d~~vr~vIltg~G~~~FcaG~D~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav 101 (256)
T TIGR03210 25 AFRGQTCDELIHALKDAG---YDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARV 101 (256)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999999873---39996299996799741104775322214754112330169999999984899899998
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 31556652000024677714554415664412566665554128999999999999999999987199989999972458
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
-|.|.+.|+-|.++++ .|++.++++|.+-...-|......- .. . +.+..|. ..-.+.+-.-
T Consensus 102 ~G~a~GgG~~lal~~D--~~iA~~~a~f~~p~~~lG~~~~~~~----~~---~--------l~r~iG~--~~a~~l~ltg 162 (256)
T TIGR03210 102 QGYAIGGGNVLVTICD--LTIASEKAQFGQVGPKVGSVDPGYG----TA---L--------LARVVGE--KKAREIWYLC 162 (256)
T ss_pred CCEEEHHHHHHHHHHC--CCCCCCCCEEECCCCEECCCCCCCH----HH---H--------HHHHCCH--HHHHHHHHHC
T ss_conf 8866668699998524--1523478717775561442078506----89---9--------9985239--9999999919
Q ss_pred CCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 58888999975886446045422510
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
..++|+||.++|||++|+.. .++.+
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~-~~l~~ 187 (256)
T TIGR03210 163 RRYTAQEALAMGLVNAVVPH-DQLDA 187 (256)
T ss_pred CCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 90769999986970534284-69999
No 73
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.55 E-value=0.00042 Score=46.37 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCCHHHHHHH------------------HH----HHHHCCCCEEEE
Q ss_conf 318989999999999974115769769-9993687614678999------------------99----986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPGGVVTAGMAI------------------YD----TMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpGG~v~~glaI------------------yD----~i~~i~~~V~Ti 106 (216)
.++.++-..+...|..++ .+.+|. +.|.+-|...-+|.-+ .+ .+..++.||...
T Consensus 22 al~~~m~~el~~~l~~~~---~d~~vr~vvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaa 98 (255)
T PRK06563 22 AFDSAMLDDLALALGEYE---ADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVA 98 (255)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999999999999986---39994499997689874056578887432125303356666539998764079998999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|-+-...-|..- +.-... + +.+..|. .+-.+.+-.
T Consensus 99 v~G~a~GgG~~lalacD--~~ias~~a~f~~pe~~~Gi~p---~~g~~~----~--------l~r~iG~--~~a~el~lt 159 (255)
T PRK06563 99 VQGYCLTLGIELMLAAD--IVVAAENTRFAQLEVQRGILP---FGGATL----R--------FPRAAGW--GNAMRYLLT 159 (255)
T ss_pred ECCEEEEHHHHHHHHCC--EEECCCCCEEECCHHCCCCCC---CCCHHH----H--------HHHHHCH--HHHHHHHHC
T ss_conf 85887608699998426--423469983536201056188---740999----9--------9999789--999998750
Q ss_pred CCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 85888899997588644604542
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
-..++|+||.++||||+|+.+..
T Consensus 160 g~~~~a~eA~~~Glv~~v~~~~~ 182 (255)
T PRK06563 160 GDEFDAQEALRLGLVQEVVPPGE 182 (255)
T ss_pred CCEECHHHHHHCCCCCEEECCCH
T ss_conf 98645999997797006658118
No 74
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.55 E-value=0.0005 Score=45.88 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC------CCHHHH-------------------HHHHHHHHHCCCCE
Q ss_conf 318989999999999974115769769999-3687------614678-------------------99999986448734
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG------GVVTAG-------------------MAIYDTMQFIKPPI 103 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG------G~v~~g-------------------laIyD~i~~i~~~V 103 (216)
.++.++-..+...+-.++ .+.++...| .+.| +|+... ..++..|..++.||
T Consensus 27 al~~~m~~~l~~~~~~~~---~d~~vrvvil~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv 103 (260)
T PRK07260 27 GFNIPMCQEILEALALAK---EDTSVRFLLINAVGKVFSVGGDLVEMKRAVAKDDVQSLVKIAELVNEISFAIKQLPKPV 103 (260)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999999999999999997---68991799997899988897688888732256416789999999999999998489998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
...+-|.|.+.|.-|.++++ .|++.++++|-+....-|......-. ..+.+.-|. .+-.+.
T Consensus 104 Iaav~G~a~GgG~~la~~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~iG~--~~a~~l 164 (260)
T PRK07260 104 IMCVDGAVAGAAANIAVAAD--FCIASTKTKFIQAFVGVGLAPDAGGL---------------FLLTRAIGL--NRATHL 164 (260)
T ss_pred EEEECCEECCCHHHHHHHHC--CCCCCCCCEEECCCCCCCCCCCCCHH---------------HHHHHHHHH--HHHHHH
T ss_conf 99976854011758988605--22235687795576686128885599---------------999999759--999999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 245858888999975886446045422510
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
+-.-..++|+||.++|||++|+.+ .++++
T Consensus 165 lltg~~~~a~eA~~~Glv~~vv~~-e~l~~ 193 (260)
T PRK07260 165 AMTGEGLTAEKALDYGIVYRVAES-EKLEK 193 (260)
T ss_pred HHCCCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 981997159999877971345587-79999
No 75
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.54 E-value=0.00035 Score=46.87 Aligned_cols=141 Identities=12% Similarity=0.102 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHHH--------------------HHHHHHHHHCCCC
Q ss_conf 318989999999999974115769769999-368------7614678--------------------9999998644873
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTAG--------------------MAIYDTMQFIKPP 102 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~g--------------------laIyD~i~~i~~~ 102 (216)
.++.++...+...|..++. +.+|...| .+. |+|+.+. ..++..|..++.|
T Consensus 32 Al~~~m~~eL~~al~~~~~---d~~vrvvVltG~G~~FcaG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 108 (277)
T PRK09120 32 AMSPTLNREMIDVLDELEF---DDDAGVLVLTGEGEAWTAGMDLKEYFRETDAQPEILQEKIRRESSGWQWRRLRMYAKP 108 (277)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999972---9995599998899972468688998521446633568999998768999999718999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 48998315566520000246777145544156644125666655541289999999999999999999871999899999
Q gi|254780272|r 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 103 V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
|...+-|.|.+.|.-|.++++ -|++.++++|-+-...-|... +.-. . ..+.+..|... -.+
T Consensus 109 vIAaVnG~a~GgG~~lalacD--i~ia~~~A~f~~pe~~~Gl~p---~~g~-~-----------~~l~r~vG~~~--A~~ 169 (277)
T PRK09120 109 TIAMVNGWCFGGGFSPLVACD--LAIAADEAQFGLSEINWGIPP---GGLV-S-----------KAMADTVGHRD--ALY 169 (277)
T ss_pred EEEEECCEEEHHHHHHHHHHH--HHHHCCCCEEECCCCCCCCCC---CCCH-H-----------HHHHHHHCHHH--HHH
T ss_conf 999988845407799999751--111055828957720358788---8668-9-----------99999969799--999
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 7245858888999975886446045422510
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.+-.-..++|+||+++|||++|+.. .++.+
T Consensus 170 l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~ 199 (277)
T PRK09120 170 YIMTGETFDGRKAAEMGLVNESVPL-AQLRA 199 (277)
T ss_pred HHHHCCCCCHHHHHHCCCCCEEECH-HHHHH
T ss_conf 9863893779999987995056088-89999
No 76
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.54 E-value=0.002 Score=42.10 Aligned_cols=142 Identities=21% Similarity=0.243 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC-------CCHHH--------------HHHHHHHHHHCCCCEEEE
Q ss_conf 8318989999999999974115769769999-3687-------61467--------------899999986448734899
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG-------GVVTA--------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG-------G~v~~--------------glaIyD~i~~i~~~V~Ti 106 (216)
-.++.++...+...+-.++ .+..+...| .+-| +|+.+ ++..+..|..++.||...
T Consensus 25 NAl~~~m~~~l~~al~~~~---~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 101 (262)
T PRK03580 25 NAIDAKTSFAMGEVFLNFR---DDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAA 101 (262)
T ss_pred CCCCHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7799999999999999986---1999659999669996042671076653478643134266789999998199999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|-+-...-|..- +.-... . +.+..|. .+-.+.+-.
T Consensus 102 V~G~a~GgG~~LalacD--~~ia~~~a~f~~pe~~lGl~p---~~g~~~----~--------l~r~iG~--~~A~~l~lt 162 (262)
T PRK03580 102 VNGYAFGGGFELALAAD--FIVCADNASFALPEAKLGIVP---DSGGVL----R--------LPKRLPP--AIVNEMLMT 162 (262)
T ss_pred ECCEEEEHHHHHHHHCC--EEEECCCCCEECHHHCCCCCC---CCCHHH----H--------HHHHHHH--HHHHHHHHC
T ss_conf 86866618699988527--024147876515776036788---854999----9--------9999709--999999871
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 858888999975886446045422510
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-.+++|+||.++|||++|+.. .++.+
T Consensus 163 g~~~~a~eA~~~Glv~~vv~~-~~l~~ 188 (262)
T PRK03580 163 GRRMDAEEALRWGLVNRVVSQ-AELMD 188 (262)
T ss_pred CCCCCHHHHHHCCCEEEECCH-HHHHH
T ss_conf 898759999887991054384-69999
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.52 E-value=0.00087 Score=44.38 Aligned_cols=138 Identities=14% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCCCHHHHHH-------------------------------------
Q ss_conf 3189899999999999741157697699993-68761467899-------------------------------------
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYIN-SPGGVVTAGMA------------------------------------- 91 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~IN-SpGG~v~~gla------------------------------------- 91 (216)
.++.++...+...+..++. +.+|...|= ..|...-+|.-
T Consensus 33 Als~~m~~eL~~al~~~~~---d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (308)
T PRK08272 33 AINADTPLELSAAVERADL---DPGVHVILVSGAGRGFCAGYDLSAYAEGSSSAGGGGAYRGTVLDGKTQAVNHLPDQPW 109 (308)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 9999999999999999850---9994399996789971068488988413343332210000000134443112442211
Q ss_pred --------------HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf --------------99998644873489983155665200002467771455441566441256-666555412899999
Q gi|254780272|r 92 --------------IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-GGFSGQASDIERHAQ 156 (216)
Q Consensus 92 --------------IyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps-~~~~G~~~di~~~a~ 156 (216)
.+..|..++.||...+-|.|.+.|.-|.++++ -|++.++++|-+-... ++..+.. .
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal~cD--~~iaa~~A~fg~p~~~~gg~p~~~--~----- 180 (308)
T PRK08272 110 DPMIDYQMMSRFVRGFMSLLHAHKPTVAKIHGYCVAGGTDIALHCD--QVIAADDAKIGYPPTRVWGVPAAG--M----- 180 (308)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCC--CEEECCCCEEECCCHHHCEECCHH--H-----
T ss_conf 1467899999999999998639998899988865628799999678--005548887977556437246212--8-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 9999999999999987199989999972458588889999758864460454225101
Q gi|254780272|r 157 DIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEEK 214 (216)
Q Consensus 157 el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~~ 214 (216)
+..+-|. .+-.+.+-.-..++|+||+++|||++|+.. .++.+.
T Consensus 181 ------------~~~~vG~--~~A~el~ltg~~i~A~eA~~~GLvn~vvp~-~eL~~~ 223 (308)
T PRK08272 181 ------------WAHRLGD--QRAKRLLFTGDCITGAQAAEWGLAVEAPPP-EDLDER 223 (308)
T ss_pred ------------HHHHHCH--HHHHHHHHHCCCCCHHHHHHCCCCCEECCH-HHHHHH
T ss_conf ------------8988369--999999871896789999986984355188-899999
No 78
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.49 E-value=0.0025 Score=41.43 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHH----------HHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 318989999999999974115769769999-368------76146----------7899999986448734899831556
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVT----------AGMAIYDTMQFIKPPISTFCMGQAA 112 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~----------~glaIyD~i~~i~~~V~Ti~~G~aa 112 (216)
.++.++...+...+..+ .|+ ++...| .+. |+|+. ....++..|..++.||...+-|.|.
T Consensus 23 Al~~~m~~~l~~al~~~--~d~--~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~ 98 (243)
T PRK07854 23 ALNSELVEELREAVRKA--GDA--GARAIVLTGQGTVFCAGADLSGDVYADDFPDALIELLHAIDAAPVPVIAAINGPAI 98 (243)
T ss_pred CCCHHHHHHHHHHHHHH--CCC--CCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEC
T ss_conf 97999999999999972--389--95599997889816689986552116677899999999998589988999758323
Q ss_pred CCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCH
Q ss_conf 65200002467771455441566441256666555412899999999999999999998719998999997245858888
Q gi|254780272|r 113 SMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSA 192 (216)
Q Consensus 113 S~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa 192 (216)
+.|.-|.++++ -|++.++++|.+-...-|.. .+.-. ..++.+ ..|. .+-.+.+-.-..++|
T Consensus 99 GgG~~lal~cD--~ria~~~a~f~~p~~~~Gl~---~~~g~----~~~l~~--------~vG~--~~A~~llltg~~i~A 159 (243)
T PRK07854 99 GAGLQLALACD--LRVVAPEAYFQFPVAKYGLA---LDNWT----IRRLSS--------LVGG--GRARAMLLGAEKLTA 159 (243)
T ss_pred CCHHHHHHCCC--EEEECCCCEEECCCCCEEEC---CCCCH----HHHHHH--------HHHH--HHHHHHHHHCCEECH
T ss_conf 35157886099--99964776575665541457---79629----999999--------8649--999999993994259
Q ss_pred HHHHHCCCCCEEECC
Q ss_conf 999975886446045
Q gi|254780272|r 193 SEACDWGVVDKVLMS 207 (216)
Q Consensus 193 ~EA~eyGliD~Ii~~ 207 (216)
+||.++|||++|+..
T Consensus 160 ~eA~~~Glv~~v~~~ 174 (243)
T PRK07854 160 EQALATGMANRIGTL 174 (243)
T ss_pred HHHHHCCCCCEECCH
T ss_conf 999877996685188
No 79
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=97.49 E-value=0.002 Score=42.02 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHH-------------------HHHHHHHHHCCCCEEEEEEC
Q ss_conf 318989999999999974115769769999-3687614678-------------------99999986448734899831
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAG-------------------MAIYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~g-------------------laIyD~i~~i~~~V~Ti~~G 109 (216)
.++.++...+...+.-++. +.++...| .+-|+..-+| ..++..+..++.||...+-|
T Consensus 27 al~~~m~~el~~al~~~~~---d~~vrvvVltg~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G 103 (258)
T PRK06190 27 ALSAALRRALFAALAEADA---DDDVDVVVLTGADPAFCAGLDLKELGGDGLAYGAADALPDIVPAWPAMRKPVIGAING 103 (258)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9899999999999998865---8993699997899875288797887046410135666889999999689999999777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 55665200002467771455441566441256666555412899999999999999999998719998999997245858
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~ 189 (216)
.|.+.|.-|.++++ .|++.++++|-+-...-|... +.-... .+.+..|. .+-.+.+-.-..
T Consensus 104 ~a~GgG~~lal~cD--~~ias~~a~f~~pe~~~Gl~p---~~g~~~------------~L~r~vG~--~~A~ellltg~~ 164 (258)
T PRK06190 104 AAVTGGLELALACD--ILIASERARFADTHARVGILP---GWGLSV------------RLPQKVGI--GRARRMSLTGNF 164 (258)
T ss_pred CHHHHHHHHHHCCC--EEEECCCCEEECCCCCCCCCC---CCCHHH------------HHHHHHCH--HHHHHHHHCCCC
T ss_conf 03044389872476--688559818978522128799---865999------------99999799--999999980999
Q ss_pred CCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 88899997588644604542251
Q gi|254780272|r 190 MSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 190 lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
++|+||.++|||++|+.. .++.
T Consensus 165 i~a~eA~~~GLv~~vv~~-~~l~ 186 (258)
T PRK06190 165 LDAEDALRAGLVTEVVPH-DELL 186 (258)
T ss_pred CCHHHHHHCCCCCEEECH-HHHH
T ss_conf 859999977974345085-6999
No 80
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.47 E-value=0.0016 Score=42.70 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHHHH----------------HHHH-HHCCCCEEEEEECC
Q ss_conf 8318989999999999974115769769999-3687614678999----------------9998-64487348998315
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAI----------------YDTM-QFIKPPISTFCMGQ 110 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~glaI----------------yD~i-~~i~~~V~Ti~~G~ 110 (216)
-.++.++-..+...|.-++ .+.+|.+.| .+.|+..-+|.-+ .... +..+.||...+-|.
T Consensus 25 Nal~~~m~~el~~~l~~~~---~d~~vrvvvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~ 101 (254)
T PRK08252 25 NAVNLAVAQGLAAALDQLD---ADDDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFAGLTERPPRKPLIAAVEGY 101 (254)
T ss_pred CCCCHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCE
T ss_conf 9989999999999999997---3999179999889973555536787863897431132579999705799889998787
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 56652000024677714554415664412566665554128999999999999999999987199989999972458588
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~l 190 (216)
|.+.|.-|.++++ .|++.++++|-+-....|... +..... .+ .+..|. .+..+.+-.-..+
T Consensus 102 a~GgG~~la~~~D--~~ias~~a~f~~pe~~~Gl~p---~~g~~~----~l--------~~~~G~--~~a~~lll~g~~~ 162 (254)
T PRK08252 102 ALAGGFELALACD--LIVAARDAKFGLPEVKRGLVA---AGGGLL----RL--------PRRIPY--HIAMELALTGDML 162 (254)
T ss_pred EEHHHHHHHHHCC--EEEECCCCCCCCCCCEECCCC---CCHHHH----HH--------HHHHHH--HHHHHHHHCCCCC
T ss_conf 7617599997478--998524442127601147688---833999----99--------999629--9999999678987
Q ss_pred CHHHHHHCCCCCEEECCC
Q ss_conf 889999758864460454
Q gi|254780272|r 191 SASEACDWGVVDKVLMSR 208 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~ 208 (216)
+|+||.++||||+|+...
T Consensus 163 ~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 163 PAERAHALGLVNRLTEPG 180 (254)
T ss_pred CHHHHHHCCCEEEECCHH
T ss_conf 799999889815862803
No 81
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.47 E-value=0.0017 Score=42.51 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=81.5
Q ss_pred CC-HHHHHHHHHHHHHHHHCCCCCCEEEE-EECCCCCHHHHH----------------------------HHHHHHHHCC
Q ss_conf 18-98999999999997411576976999-936876146789----------------------------9999986448
Q gi|254780272|r 51 IE-DHMATLICAQLLFLEAENPQKEISLY-INSPGGVVTAGM----------------------------AIYDTMQFIK 100 (216)
Q Consensus 51 I~-~~~a~~iia~Ll~L~~~~~~k~I~l~-INSpGG~v~~gl----------------------------aIyD~i~~i~ 100 (216)
++ ..+-..+...+-.+ +.+.++... |.+.|+..-+|. .+...|..++
T Consensus 27 l~~~~~~~el~~~l~~~---~~d~~vrvvVitg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (266)
T PRK09245 27 LSGNDAVDALVAACARI---NADRSVRAVILTGAGTAFSSGGNVKDMRARAGAFGGSPADIRQGYRRGIQRIPLALYNLE 103 (266)
T ss_pred CCHHHHHHHHHHHHHHH---HHCCCEEEEEEECCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999988---409982699997888704256568999753156667677899999999999999998389
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 73489983155665200002467771455441566441256666555412899999999999999999998719998999
Q gi|254780272|r 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 101 ~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.||...+-|.|.+-|.-|.++++ .|++.++++|-+-...-|.. .+.-. .. .+.+. .|. .+-
T Consensus 104 kPvIaai~G~a~GgG~~lal~cD--~~va~~~a~f~~pe~~~Gi~---p~~g~-~~---~l~r~--------iG~--~~a 164 (266)
T PRK09245 104 VPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFVKLGLI---PGDGG-AW---LLPRI--------IGM--ARA 164 (266)
T ss_pred CCEEEEECCEECCCHHHHHHCCC--EEEECCCCEEECCCCCCCCC---CCCCH-HH---HHHHH--------HHH--HHH
T ss_conf 98899982666253057776077--54513575796740276558---77679-99---99999--------749--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 997245858888999975886446045422510
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
.+.+-.-..++|+||.++|||++|+.. .++.+
T Consensus 165 ~el~ltg~~~~a~eA~~~Glv~~vv~~-~el~~ 196 (266)
T PRK09245 165 AEMAFTGDAIDAATALEWGLVSRVVPA-DQLLP 196 (266)
T ss_pred HHHHHCCCCCCHHHHHHCCCCEEEECH-HHHHH
T ss_conf 999981999879999987984175086-78999
No 82
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.47 E-value=0.002 Score=42.05 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHH-------------------------HHHHHHHHCCCCE
Q ss_conf 318989999999999974115769769999-36876146789-------------------------9999986448734
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGM-------------------------AIYDTMQFIKPPI 103 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~gl-------------------------aIyD~i~~i~~~V 103 (216)
.++.++...+...+-.+ +|+ ++...| .+-|...-+|. .+...|..++.||
T Consensus 27 Al~~~m~~el~~al~~~--~d~--~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 102 (262)
T PRK08140 27 SFTREMHRELREALDQV--EDD--GARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIERFYNPLVRRLRALPLPV 102 (262)
T ss_pred CCCHHHHHHHHHHHHHH--HCC--CCEEEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999985--678--97089997889860066656866105456734689999999999999999589988
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
...+-|.|.+.|.-|.++++ .|++.++++|-+-...-|.. .+.-. .. . +.+..|. .+-.+.
T Consensus 103 Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~p~~~lGl~---p~~gg-~~---~--------l~r~vG~--~~A~~l 163 (262)
T PRK08140 103 IAAVNGVAAGAGANLALACD--IVLAARSASFIQAFVKIGLV---PDSGG-TW---F--------LPRLVGM--ARALGL 163 (262)
T ss_pred EEEECCEEECCHHHHHHHCC--EEEECCCCEECCCCCCEEEC---CCCCH-HH---H--------HHHHHHH--HHHHHH
T ss_conf 99987976410579987355--43303675030565546514---88669-99---9--------9999879--999999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 24585888899997588644604542251
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+-.-..++|+||.++|||++|+.. .++.
T Consensus 164 lltg~~~~A~eA~~~Glv~~vv~~-~~l~ 191 (262)
T PRK08140 164 ALLGEKLSAEQAEQWGLIWRVVDD-AALA 191 (262)
T ss_pred HHCCCCCCHHHHHHCCCEEEECCH-HHHH
T ss_conf 983998770679978985787486-7999
No 83
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.44 E-value=0.0028 Score=41.16 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC------CCHHH----------HHHHHH---HHHHCCCCEEEEEECC
Q ss_conf 3189899999999999741157697699993687------61467----------899999---9864487348998315
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINSPG------GVVTA----------GMAIYD---TMQFIKPPISTFCMGQ 110 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG------G~v~~----------glaIyD---~i~~i~~~V~Ti~~G~ 110 (216)
.++.++...+...+--+ +.+..+ +.|..-| +|+.+ .-.+++ .+...+.||...+-|.
T Consensus 27 Al~~~m~~el~~al~~~---~~d~~v-vVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~p~pvIAaV~G~ 102 (251)
T PRK07112 27 AINNRLIAECMDVLDRC---EHAATI-VVLEGLPDVFCFGADFSDIAEKPDALIDSEPLYGLWHRLATGPYITIAHVQGK 102 (251)
T ss_pred CCCHHHHHHHHHHHHHC---CCCCCE-EEEECCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 87999999999999851---669808-99988998705677727665163221246799999999984998299996165
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 56652000024677714554415664412566665554128999999999999999999987199989999972458588
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~l 190 (216)
|.+.|.-|.++++ -|++.++++|.+-....|... ... ... +.+.-|. .+-.+.+-...++
T Consensus 103 a~GgG~~lal~cD--~~ia~~~A~f~~pe~~~Gl~p---~~~--~~~-----------L~r~iG~--~~A~~l~ltg~~i 162 (251)
T PRK07112 103 VNAGGIGFVAASD--IAIADENVPFSLSELLFGLIP---ACV--LPF-----------LARRIGT--QKAHYMTLMTQPV 162 (251)
T ss_pred EEEHHHHHHHHCC--EEEECCCCEEECCCCCCCCCC---CCH--HHH-----------HHHHHHH--HHHHHHHHHCCCC
T ss_conf 6661567765215--024579988987410637377---737--999-----------9999979--9999999939962
Q ss_pred CHHHHHHCCCCCEEECCC
Q ss_conf 889999758864460454
Q gi|254780272|r 191 SASEACDWGVVDKVLMSR 208 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~ 208 (216)
+|+||+++|||++|+...
T Consensus 163 ~A~eA~~~GLv~~vv~~~ 180 (251)
T PRK07112 163 TAQQAFSWGLVDAIDANS 180 (251)
T ss_pred CHHHHHHCCCCCEECCCH
T ss_conf 499999879978861977
No 84
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.44 E-value=0.0042 Score=40.07 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH----------------HHHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769999-368------761467----------------899999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA----------------GMAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~----------------glaIyD~i~~i~~~V~Ti 106 (216)
.++.++-+.+...+..++. +..+...| -+. |||+.. ...+++.|..++.||...
T Consensus 26 al~~~m~~eL~~~~~~~~~---d~~vrvivltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 102 (255)
T PRK07827 26 ALSTALVSQLHDGLTDAAA---DPGVRAVVLTHTGGTFCAGADLSEAGGGDPYDMAVDRAREMTALLRAIVELPKPVIAA 102 (255)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9899999999999999975---8995599997799874478860543237814457888999999999999689988999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 83155665200002467771455441566441256666555412899999999999999999998719998999997245
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
+-|.|.+.|.-|.++++ .|++.++++|.+-...-|... +.-. ...+.+ +-. ..-.+.+-.
T Consensus 103 v~G~a~GgG~~la~~cD--~~ia~~~a~f~~pe~~lGl~p---~~g~-~~~l~r----lg~----------~~a~~l~lt 162 (255)
T PRK07827 103 IDGHVRAGGLGLVGACD--IAVAGPGSTFALTEARIGVAP---AIIS-LTLLPK----LSP----------RAAARYYLT 162 (255)
T ss_pred ECCEEEECCHHHHHCCC--EEECCCCCEEECCCCCCCCCC---CCCH-HHHHHH----HHH----------HHHHHHHHC
T ss_conf 77867634046655165--541489985505001562588---7539-999999----999----------999988610
Q ss_pred CCCCCHHHHHHCCCCCEEEC
Q ss_conf 85888899997588644604
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~ 206 (216)
-..++|+||.++|||+.+.+
T Consensus 163 g~~~~a~eA~~~Glv~~~~e 182 (255)
T PRK07827 163 GEKFGAAEAARIGLVTVAAD 182 (255)
T ss_pred CCCCCHHHHHHCCCEEEECC
T ss_conf 88278999998799245665
No 85
>PRK07396 naphthoate synthase; Validated
Probab=97.42 E-value=0.0019 Score=42.17 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCC-HHHH-------------------HH---HHHHHHHCCCCEEE
Q ss_conf 318989999999999974115769769999-368761-4678-------------------99---99998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGV-VTAG-------------------MA---IYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~-v~~g-------------------la---IyD~i~~i~~~V~T 105 (216)
.++.++...+...+..++ .+.++...| .+-|+. .-+| +. +...|+.++.||..
T Consensus 36 Al~~~m~~eL~~al~~~~---~d~~vrvvVltG~G~~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 112 (273)
T PRK07396 36 AFRPKTVKEMIDAFADAR---DDDNIGVIILTGAGDKAFCSGGDQKVRGDGGYVDDDGVPRLNVLDLQRLIRTCPKPVIA 112 (273)
T ss_pred CCCHHHHHHHHHHHHHHH---HCCCEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999999999985---09982699997899850425876454224566784201032089999999829999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 983155665200002467771455441566441256666-5554128999999999999999999987199989999972
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~-~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
.+-|.|.+.|.-|.++++ -|++.++++|.+-.+.-|. -+... +..+-+ ..|. .+-.+.+
T Consensus 113 aV~G~a~GgG~~lalacD--~~ias~~A~f~~~~~~~G~~~~~~g-----~~~L~r-----------~vG~--~~A~el~ 172 (273)
T PRK07396 113 MVAGYAIGGGHVLHLVCD--LTIAADNAIFGQTGPKVGSFDGGYG-----ASYLAR-----------IVGQ--KKAREIW 172 (273)
T ss_pred EECCEEEEHHHHHHHHCC--CCEECCCCEEECCCCCCCCCCCCCH-----HHHHHH-----------HHHH--HHHHHHH
T ss_conf 985877607699998528--0122379889776651470677325-----789999-----------8569--9999999
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 45858888999975886446045422510
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
-.-..++|+||+++|||++|+.. .++.+
T Consensus 173 ltg~~i~A~eA~~~Glv~~vv~~-~~l~~ 200 (273)
T PRK07396 173 FLCRQYNAQEALDMGLVNTVVPL-EDLEK 200 (273)
T ss_pred HHCCCCCHHHHHHCCCCCEECCH-HHHHH
T ss_conf 82898779999977981135587-68999
No 86
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.42 E-value=0.0018 Score=42.33 Aligned_cols=139 Identities=13% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHH---------------H---HHHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769999-36------8761467---------------8---999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTA---------------G---MAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~---------------g---laIyD~i~~i~~~V~ 104 (216)
.++.++...+...+..++. +.+|...| .+ .|+|+.. + -.+.+.|..++.||.
T Consensus 29 al~~~m~~~l~~al~~~~~---d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 105 (271)
T PRK05674 29 AFNAQMIRELILALDQVQS---DASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYALARLKIPTL 105 (271)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9899999999999998865---8991799998899973278734766532456610026789999999999996899899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|.-|.++++ .|++.++++|-+-...-|... +.- .. .+.+ ..|. .+-.+.+
T Consensus 106 aaV~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~lGl~p---~~~-~~-~l~~-----------~iG~--~~A~~ll 165 (271)
T PRK05674 106 AVVQGAAFGGALGLISCCD--MAIGAEDAQFCLSEVRIGLAP---AVI-SP-FVVK-----------AIGE--RAARRYA 165 (271)
T ss_pred EEECCHHHEHHHHHHHHCC--EEECCCCCEEECCCCCEEECC---CCH-HH-HHHH-----------HHHH--HHHHHHH
T ss_conf 9977830024688876306--222111561605455466745---614-87-8999-----------9639--9999999
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 4585888899997588644604542251
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
-.-.-++|+||.++|||++|+.. .++.
T Consensus 166 ltg~~~sA~eA~~~Glv~~vv~~-~el~ 192 (271)
T PRK05674 166 LTAERFDGRRARELGLLAESYPA-AELD 192 (271)
T ss_pred HHCCCCCHHHHHHCCCEEEEECH-HHHH
T ss_conf 84893479999987992068577-7999
No 87
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.42 E-value=0.0032 Score=40.82 Aligned_cols=140 Identities=15% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHHHH-----------------HHHHHHHHCCCCEEE
Q ss_conf 318989999999999974115769769999-36------876146789-----------------999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTAGM-----------------AIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~gl-----------------aIyD~i~~i~~~V~T 105 (216)
.++.++...+...+-.++. +.++...| .+ -|+++.... .++..|...+.||..
T Consensus 35 als~~m~~~l~~a~~~~~~---d~~vrvvvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIA 111 (271)
T PRK07327 35 AADARMHRELADIWRDVDR---DPDVRVVVIRGEGKAFSAGGDLALVEEMAGDFEVRARVWREARDLVYNVINCSKPIVS 111 (271)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9899999999999999976---8991699997899865567564777631578788999999999999999978998899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 98315566520000246777145544156644125666655541289999999999999999999871999899999724
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.+-|.|.+.|.-|.++++ -|++.++++|.+-...-|......-.. .+- ...|. ..-.+.+-
T Consensus 112 av~G~a~GgG~~lal~cD--~~ia~~~a~f~~~~~~~Gl~p~~~~~~----~l~-----------~~vG~--~~A~elll 172 (271)
T PRK07327 112 AIHGPAVGAGLVAALLAD--ISIAAKDARIIDGHTRLGVAAGDHAAI----VWP-----------LLCGM--AKAKYYLL 172 (271)
T ss_pred EEECEEECCCCHHHHHCC--EEEECCCCEEECCCCCEEECCCCCHHH----HHH-----------HHHHH--HHHHHHHH
T ss_conf 980333045508776368--436848985876513060577741788----899-----------87319--99999998
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 585888899997588644604542251
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.-..++|+||.++||+++|+.. .++.
T Consensus 173 tg~~i~A~eA~~~Glv~~vv~~-~~l~ 198 (271)
T PRK07327 173 LCEPVSGEEAERIGLVSLAVDD-DELL 198 (271)
T ss_pred HCCCCCHHHHHHCCCCCEEECH-HHHH
T ss_conf 7798679999987992288687-7899
No 88
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.40 E-value=0.0014 Score=43.09 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHHH---------------------HHHHH---HHCCCCE
Q ss_conf 8318989999999999974115769769999-368761467899---------------------99998---6448734
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMA---------------------IYDTM---QFIKPPI 103 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~gla---------------------IyD~i---~~i~~~V 103 (216)
..++.++...+...|-.++. +.++...| .+.|+..-+|.- ..+.+ ..++.||
T Consensus 27 Nal~~~m~~el~~al~~~~~---d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv 103 (263)
T PRK07799 27 NALSTEMLAIMVDAWDRVDN---DPDIRSCILTGAGGYFCAGMDLKAATQKPPGDSFKDGSYDPSRIDALLKGRRLTKPL 103 (263)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCE
T ss_conf 99899999999999999861---999279999888982535866688750685124554110278999999863599988
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
...+-|.|.+.|.-+.++++ .|++.++++|.+-...-|... +.-... .+-+ . .|. .+-.+.
T Consensus 104 Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe~~lGi~p---~~g~~~-~l~r---~--------iG~--~~A~el 164 (263)
T PRK07799 104 IAAVEGPAIAGGTEILQGTD--IRVAGESAKFGISEAKWSLYP---MGGSAV-RLVR---Q--------IPY--TVACDL 164 (263)
T ss_pred EEEECCEEEHHHHHHHHHCC--EEEECCCCCCCCCCCEEECCC---CCHHHH-HHHH---H--------HHH--HHHHHH
T ss_conf 99985875568899988457--666306654147424361178---713999-9999---8--------649--999999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 24585888899997588644604542
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
+-.-..++|+||.++|||++|+....
T Consensus 165 lltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 165 LLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred HHHCCCCCHHHHHHCCCEEEECCCCH
T ss_conf 97189997999997798048718337
No 89
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.39 E-value=0.0051 Score=39.52 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE-C------CCCCHHH------------HHHHHHHHHHCCCCEEEEEEC
Q ss_conf 83189899999999999741157697699993-6------8761467------------899999986448734899831
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYIN-S------PGGVVTA------------GMAIYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~IN-S------pGG~v~~------------glaIyD~i~~i~~~V~Ti~~G 109 (216)
-.++.++-..+..-+..++. +..|...|= + .|+++.. ...++..+...+.||...+-|
T Consensus 22 Na~~~~m~~~l~~al~~~~~---d~~vr~vvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIaav~G 98 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLE---DSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRG 98 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999999999999999964---979279999687987757766455295158999999999999999689988999822
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 55665200002467771455441566441256666555412899999999999999999998719998999997245858
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~ 189 (216)
.|.+.|.-|.++++ .|++.++++|-+-...-|..... ... . +.+.-|. ....+.+-.-..
T Consensus 99 ~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~~~~----~~~----~--------l~~~iG~--~~a~~l~ltG~~ 158 (251)
T TIGR03189 99 QCLGGGLEVAAAGN--LMFAAPDAKLGQPEIVLGVFAPA----ASC----L--------LPERMGR--VAAEDLLYSGRS 158 (251)
T ss_pred EEECCHHHHHHHCC--CCEECCCCCCCCCCCEEEECCCC----HHH----H--------HHHHHHH--HHHHHHHHCCCC
T ss_conf 78622078898667--45234764334840026106881----899----9--------9999869--999999820882
Q ss_pred CCHHHHHHCCCCCEEECC
Q ss_conf 888999975886446045
Q gi|254780272|r 190 MSASEACDWGVVDKVLMS 207 (216)
Q Consensus 190 lsa~EA~eyGliD~Ii~~ 207 (216)
++|+||.++|||++|++.
T Consensus 159 i~A~eA~~~GlVn~v~~d 176 (251)
T TIGR03189 159 IDGAEGARIGLANAVAED 176 (251)
T ss_pred CCHHHHHHCCCCHHCCCC
T ss_conf 669999976983600597
No 90
>KOG1680 consensus
Probab=97.38 E-value=0.0007 Score=44.97 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH-------------------HHHHHHHHHCCCCEEEEEECC
Q ss_conf 3189899999999999741157697699993687614678-------------------999999864487348998315
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG-------------------MAIYDTMQFIKPPISTFCMGQ 110 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~g-------------------laIyD~i~~i~~~V~Ti~~G~ 110 (216)
.++..++.++...+.-+++.++.+-|- +.--|++.-+| +..++.+..++.||....-|+
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viV--ltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~ 137 (290)
T KOG1680 60 ALCRATMLELAEAFKDFESDDSVGVIV--LTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGF 137 (290)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEE--EECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECE
T ss_conf 115899999999999740467654799--976887523643789875211234454430012566652465513755036
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 5665200002467771455441566441256666---5554128999999999999999999987199989999972458
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGF---SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~---~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
|-.-|.-|...++ -|++.++|.|..-++.-|. +|-.+-+ .. --|++ +-.+.+-.-
T Consensus 138 AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl--------------~r----~vG~s--~Ale~~ltg 195 (290)
T KOG1680 138 ALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRL--------------PR----IVGKS--RALEMILTG 195 (290)
T ss_pred EECCCHHHHHHCC--EEECCCCCEECCCCCCCCCCCCCCCHHHH--------------HH----HHCHH--HHHHHHHHC
T ss_conf 6436122235313--47526777524644312776477721068--------------87----85767--899999716
Q ss_pred CCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 58888999975886446045422510
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
..++|+||.+.|+|++|+....-+.|
T Consensus 196 ~~~~AqeA~~~GlVn~Vvp~~~~l~e 221 (290)
T KOG1680 196 RRLGAQEAKKIGLVNKVVPSGDALGE 221 (290)
T ss_pred CCCCHHHHHHCCCEEEEECCHHHHHH
T ss_conf 83647788757852475243067999
No 91
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.38 E-value=0.0025 Score=41.48 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCCHHHHHH-------------------HHHHHHHCCCCEEEEEEC
Q ss_conf 3189899999999999741157697699-99368761467899-------------------999986448734899831
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSPGGVVTAGMA-------------------IYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSpGG~v~~gla-------------------IyD~i~~i~~~V~Ti~~G 109 (216)
.++.++...+...+..++. +.++.. .|.+.|+..-+|.- +......++.||...+-|
T Consensus 26 al~~~m~~~L~~al~~~~~---d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAaV~G 102 (254)
T PRK08259 26 AVDGPTAAALAAAFRAFDA---DDAASVAVLTGAGGTFCAGADLKAVATPRANRVHRSGPGPMGPSRMRLSKPVIAAISG 102 (254)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCHHHHHCCCCCCHHHCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 9899999999999999860---9993499997798726456686665055532001112105679998589988999778
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 556652000024677714554415664412566665---55412899999999999999999998719998999997245
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS---GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~---G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
.|.+.|.-|.++++ .|++.++++|-+-.+..|.- |-. . .+.+..|. .+-.+.+-.
T Consensus 103 ~a~GgG~~lal~cD--~~ia~~~A~f~~~~~~~Gl~~~~ggt------~------------~L~r~vG~--~~A~elllt 160 (254)
T PRK08259 103 YAVAGGLELALWCD--LRVAEEDAVFGVFCRRWGVPLIDGGT------V------------RLPRLIGH--SRAMDLILT 160 (254)
T ss_pred EEEECCHHHHHHCC--EEEECCCCEEECCHHHCCCCCCCCCC------H------------HHHHHHCH--HHHHHHHHH
T ss_conf 86557446644156--66855896897702640878676542------0------------16777489--999999985
Q ss_pred CCCCCHHHHHHCCCCCEEECC
Q ss_conf 858888999975886446045
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~ 207 (216)
-..++|+||+++|||++|+..
T Consensus 161 g~~i~A~eA~~~GLv~~vv~~ 181 (254)
T PRK08259 161 GRPVDADEALAIGLANRVVPK 181 (254)
T ss_pred CCCCCHHHHHHCCCCCEEECH
T ss_conf 883269999986996178785
No 92
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.37 E-value=0.0018 Score=42.43 Aligned_cols=137 Identities=14% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-C------CCCHHH----------------------HHHHHHHHHHCC
Q ss_conf 31898999999999997411576976999936-8------761467----------------------899999986448
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINS-P------GGVVTA----------------------GMAIYDTMQFIK 100 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS-p------GG~v~~----------------------glaIyD~i~~i~ 100 (216)
.++.++...+...+..++. +.++...|=+ . |+++.. .-.++..|+.++
T Consensus 26 Al~~~m~~el~~a~~~~~~---d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (269)
T PRK05864 26 SMAFDVMVPLKEALAEVSY---DNSVRVVVLTGAGRGFSSGADHKSAGSVPHVEGLTRPTYALRSMELLDDVILALRRLH 102 (269)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9899999999999998864---8992799997899981468565650454333444235678889999999999998589
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 73489983155665200002467771455441566441256666555412899999999999999999998719998999
Q gi|254780272|r 101 PPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 101 ~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.||..-+-|.|.+.|.-|.++++ -|++.++++|-+-....|... .+.-. ...+ .+..|. .+-
T Consensus 103 kPvIaaV~G~a~GgG~~lal~cD--~ria~~~A~f~~~~~~~Gl~~--~~~G~-~~~L-----------~r~vG~--~~A 164 (269)
T PRK05864 103 QPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAGINNGLTA--SELGL-SYLL-----------PRAIGS--SRA 164 (269)
T ss_pred CCEEEEECCEEEECCHHHHHCCC--EEEECCCCEEECCCCCEEECC--CCHHH-HHHH-----------HHHHHH--HHH
T ss_conf 98899973857646357764177--024358868955644741257--84127-7888-----------998689--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 997245858888999975886446045
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
.+.+-.-..++|+||.++|||++|+..
T Consensus 165 ~el~ltg~~i~A~eA~~~Glv~~vv~~ 191 (269)
T PRK05864 165 FEIMLTGRDVDAEEAERIGLVSRQVPD 191 (269)
T ss_pred HHHHHHCCCCCHHHHHHCCCCCEEECC
T ss_conf 999981991279999977973368871
No 93
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.37 E-value=0.0015 Score=42.96 Aligned_cols=139 Identities=18% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECC------CCCHHH-----------------------------HHHHH
Q ss_conf 318989999999999974115769769999-368------761467-----------------------------89999
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSP------GGVVTA-----------------------------GMAIY 93 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSp------GG~v~~-----------------------------glaIy 93 (216)
.++.++...+...+..++. +.++...| .+. |+|+.+ +..+.
T Consensus 27 Al~~~m~~el~~al~~~~~---d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
T PRK08260 27 AFTVTMARELIEAFDAADA---DDDVRAVIVTGAGRAFCAGADLSSGGNTFDLDGLVPRLEDDRADLSDPGVRDGGGRVT 103 (293)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999964---8990699998899986656076221232330221122223555420177776777999
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99864487348998315566520000246777145544156644125666655541289999999999999999999871
Q gi|254780272|r 94 DTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNC 173 (216)
Q Consensus 94 D~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~T 173 (216)
..|..++.||...+-|.|.+.|.-|.++++ -|++.++++|-+-...-|.... .-... .+- +..
T Consensus 104 ~~i~~~~kPvIAaV~G~a~GgG~~LalacD--~rias~~a~f~~~~~~~Gl~p~---~g~~~-~L~-----------rlv 166 (293)
T PRK08260 104 LRIFDCLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFGRRGIVPE---AASSW-FLP-----------RLV 166 (293)
T ss_pred HHHHHCCCCEEEEECCEEEHHHHHHHHCCC--CCCCCCCCEEECCCCCCCCCCC---CCHHH-HHH-----------HHH
T ss_conf 999848998899988985126589876036--0010247887366656156877---53999-999-----------997
Q ss_pred CCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 99989999972458588889999758864460454225
Q gi|254780272|r 174 GKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDI 211 (216)
Q Consensus 174 g~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~ 211 (216)
|. .+-.+.+-.-.-++|+||+++|||++|+.. .++
T Consensus 167 G~--~~A~el~ltG~~i~A~eA~~~GlV~~vv~~-~~l 201 (293)
T PRK08260 167 GI--STALEWVYSGRVFDAQEALDGGLVRSVHPP-DDL 201 (293)
T ss_pred CH--HHHHHHHHHCCCCCHHHHHHCCCEEEECCH-HHH
T ss_conf 99--999999975894669999877954567581-789
No 94
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.36 E-value=0.0015 Score=42.81 Aligned_cols=134 Identities=18% Similarity=0.249 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCC------CCHHH---------------HHHHHHHHHHCCCCEEEEE
Q ss_conf 318989999999999974115769769-9993687------61467---------------8999999864487348998
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPG------GVVTA---------------GMAIYDTMQFIKPPISTFC 107 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpG------G~v~~---------------glaIyD~i~~i~~~V~Ti~ 107 (216)
.++.++...+...+.-++ + ++. +.|.+-| +++.. ...+++.|..++.||...+
T Consensus 34 Al~~~m~~eL~~~~~~~~--~---dvrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIaav 108 (264)
T PRK08150 34 ALNDGLIEALRDAFARLP--E---EARAVVLHGEGDHFCAGLDLSELRERDATEGMRHSQRWHRVFDKIQYGRVPVIAAL 108 (264)
T ss_pred CCCHHHHHHHHHHHHHCC--C---CCCEEEEECCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 989999999999998524--4---88589998779860033457987516823678888899999999982899889997
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 3155665200002467771455441566441256666-555412899999999999999999998719998999997245
Q gi|254780272|r 108 MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF-SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDR 186 (216)
Q Consensus 108 ~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~-~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~r 186 (216)
-|.|.+.|.-|.++++ .|++.++++|-+-....|. -+... ...+- +. -|. ..-.+.+-.
T Consensus 109 ~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~~Gl~p~~g~-----~~~l~---r~--------vG~--~~a~~l~lt 168 (264)
T PRK08150 109 HGAVVGGGLELASAAH--IRVADESTYFALPEGQRGIFVGGGG-----SVRIP---RL--------IGV--ARMTDMMLT 168 (264)
T ss_pred CCEEEEEEEEEECCCE--EEECCCCCEEECHHCCCCCCCCCCH-----HHHHH---HH--------HHH--HHHHHHHHC
T ss_conf 2689870243102304--5541578677161113376888529-----99999---99--------709--999999983
Q ss_pred CCCCCHHHHHHCCCCCEEECCC
Q ss_conf 8588889999758864460454
Q gi|254780272|r 187 DHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 187 D~~lsa~EA~eyGliD~Ii~~~ 208 (216)
-..++|+||.++|||++|+...
T Consensus 169 g~~i~a~eA~~~Glv~~vv~~~ 190 (264)
T PRK08150 169 GRVYSAQEGVRLGLAQYLVPAG 190 (264)
T ss_pred CCCCCHHHHHHCCCCCEEECCC
T ss_conf 9951699999869973873800
No 95
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.28 E-value=0.0031 Score=40.85 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHHHH------------------------------HH
Q ss_conf 318989999999999974115769769999-36------876146789------------------------------99
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTAGM------------------------------AI 92 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~gl------------------------------aI 92 (216)
.++.++...+...+..++. +.+|...| .. -|+|+..++ ..
T Consensus 28 Al~~~m~~eL~~al~~~~~---d~~vrvvVltG~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 104 (298)
T PRK12478 28 TIVPPMPDEIEAAIGLAER---DQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQK 104 (298)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999820---8995399997899870256354225655435531035667412378898886306899
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986448734899831556652000024677714554415664412566665554128999999999999999999987
Q gi|254780272|r 93 YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKN 172 (216)
Q Consensus 93 yD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~ 172 (216)
+-.|..++.||...+-|.|.+.|.-|.++++ -|++.++++|-+-... .+|-... .-.+.++
T Consensus 105 ~~~i~~~~kPvIAaVnG~a~GgG~~Lal~cD--i~iAs~~A~f~~p~~~--lgg~~~~----~~~~~rl----------- 165 (298)
T PRK12478 105 FMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASEDAVIGTPYSR--MWGAYLT----GMWLYRL----------- 165 (298)
T ss_pred HHHHHHCCCCEEEEECCEEEHHHHHHHHHCC--EEEECCCCEEECCCCC--CCCCCHH----HHHHHHH-----------
T ss_conf 9999818998899987987367789998679--4785388788666201--2765414----7999976-----------
Q ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 19998999997245858888999975886446045422510
Q gi|254780272|r 173 CGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 173 Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
| ..+-.+.+-.-..++|+||+++|||++|+.. .++.+
T Consensus 166 -g--~~~a~~l~ltg~~i~A~eA~~~GLVn~VVp~-eeL~~ 202 (298)
T PRK12478 166 -S--LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEA 202 (298)
T ss_pred -H--HHHHHHHHHCCCCCCHHHHHHCCCHHEECCH-HHHHH
T ss_conf -8--9999999971996549999985960445288-89999
No 96
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.25 E-value=0.0044 Score=39.95 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECC-------CCCHH----------------HHHHHHHHHHHCCCCEEE
Q ss_conf 318989999999999974115769769-999368-------76146----------------789999998644873489
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSP-------GGVVT----------------AGMAIYDTMQFIKPPIST 105 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSp-------GG~v~----------------~glaIyD~i~~i~~~V~T 105 (216)
.++.++...+...+-.++. +.+|. +.|-|. |+|+. .+-.+++.|..++.||..
T Consensus 30 al~~~~~~~L~~~l~~~~~---d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 106 (706)
T PRK11154 30 TLKAEFAEQVRAILKQIKE---DKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVA 106 (706)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999999999999850---9996699995179980470729776724787577999998889999999809998899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9831556652000024677714554415664412566--66----55541289999999999999999999871999899
Q gi|254780272|r 106 FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG--GF----SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEE 179 (216)
Q Consensus 106 i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~--~~----~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~ 179 (216)
-.-|.|.+.|.-|.++|+ .|.+..+++..+.+|.. |. .|. .-+ -+ ..|. .+
T Consensus 107 AvnG~a~GgG~ElaLacD--~RiAs~~a~~~~g~Pev~lGl~Pg~Ggt-~rL-------pR-----------liG~--~~ 163 (706)
T PRK11154 107 AIHGACLGGGLELALACH--YRVCTDDPKTVLGLPEVQLGLLPGSGGT-QRL-------PR-----------LIGV--ST 163 (706)
T ss_pred EECCEEEHHHHHHHHHCC--EEEECCCCCCCCCCCCCEECCCCCCCCH-HHC-------CH-----------HCCH--HH
T ss_conf 987864189999999689--9996178463213643102778899724-022-------11-----------2389--99
Q ss_pred HHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 99972458588889999758864460454
Q gi|254780272|r 180 VEKTLDRDHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 180 i~~~~~rD~~lsa~EA~eyGliD~Ii~~~ 208 (216)
-.+.+-.-..++|+||++.||||+|+...
T Consensus 164 A~eliltG~~i~A~eA~~~GLVd~VVp~~ 192 (706)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPQS 192 (706)
T ss_pred HHHHHHCCCCCCHHHHHHCCCCCEECCCH
T ss_conf 99764007878899999779875515908
No 97
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=96.99 E-value=0.0012 Score=43.47 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-EC------CCCCHHHH----------------HHHHHHHHHCCCCEEEE
Q ss_conf 318989999999999974115769769999-36------87614678----------------99999986448734899
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NS------PGGVVTAG----------------MAIYDTMQFIKPPISTF 106 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NS------pGG~v~~g----------------laIyD~i~~i~~~V~Ti 106 (216)
.++.++-..+...+-.++.. .+|...| -+ -|+++..- ..+...|..++.||..-
T Consensus 28 al~~~~~~~l~~al~~~~~d---~~vr~vvltG~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 28 ALNLEMLDELAEALDEAEAD---PDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88999999999999999629---981699998189716717498877422310468888878899999998589999998
Q ss_pred EECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 831556652000024677714554415664412566665---55412899999999999999999998719998999997
Q gi|254780272|r 107 CMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFS---GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 107 ~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~---G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
+-|.|.+.|.-|.++++ .|.+.++++|-+....-|.. |-. ..+.+ ..|.... .+.
T Consensus 105 v~G~a~GgG~eLal~~D--~ria~~~a~f~~pe~~iGl~pg~g~~-------~~l~r-----------~~G~~~a--~~l 162 (257)
T COG1024 105 VNGYALGGGLELALACD--IRIAAEDAKFGLPEVNLGLLPGDGGT-------QRLPR-----------LLGRGRA--KEL 162 (257)
T ss_pred ECCHHHHHHHHHHHHCC--EEEECCCCEEECCCCCCCCCCCCCHH-------HHHHH-----------HCCHHHH--HHH
T ss_conf 36501467889987088--79834777885541342658784588-------99999-----------7396889--999
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 24585888899997588644604542251
Q gi|254780272|r 184 LDRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 184 ~~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
+--..-++|+||+++||||+++....++.
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~l~ 191 (257)
T COG1024 163 LLTGEPISAAEALELGLVDEVVPDAEELL 191 (257)
T ss_pred HHCCCCCCHHHHHHCCCCCEECCCHHHHH
T ss_conf 98289888999997899146658768899
No 98
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.91 E-value=0.0058 Score=39.15 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEECCC------CCHHH------------------HHHHHHHHHHCCCCEE
Q ss_conf 318989999999999974115769769-9993687------61467------------------8999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEIS-LYINSPG------GVVTA------------------GMAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~-l~INSpG------G~v~~------------------glaIyD~i~~i~~~V~ 104 (216)
.++.++...+...+..++. +.++. +.|.|.| +|+.. +-.+++.|..++.||.
T Consensus 30 al~~~~~~~L~~al~~~~~---d~~vr~vVltg~g~~F~AGaDl~e~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~kPvI 106 (715)
T PRK11730 30 KLDRATLASLGEALDALEA---QSDLKGLLLTSAKDAFIVGADITEFLSLFAVPEEELSQWLHFANSIFNRLEDLPVPTV 106 (715)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9899999999999999850---9997599997899815727087878525468878898888888999999971999889
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 9983155665200002467771455441566441256666----555412899999999999999999998719998999
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~----~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
..+-|.|.+-|.-|.++|+ .|.+.++++|-+-...-|. .|.. - +-++ .|. +.-
T Consensus 107 AAI~G~AlGgGlelALacd--~Rias~~a~~g~pev~lGl~pg~Ggt~-r-------Lprl-----------iG~--~~A 163 (715)
T PRK11730 107 AAINGYALGGGCECVLATD--YRVASPTARIGLPETKLGIMPGFGGTV-R-------LPRL-----------IGA--DNA 163 (715)
T ss_pred EEECCEEEHHHHHHHHHCC--EEEECCCCEEECCCCCCCCCCCCCHHH-H-------HHHH-----------CCH--HHH
T ss_conf 9988884279899999689--999639988978654757287984253-7-------5413-----------269--999
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 997245858888999975886446045
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
.+.+-.-..++|+||++.||||+|+.+
T Consensus 164 ~~l~l~G~~~~a~~A~~~GLvd~vv~~ 190 (715)
T PRK11730 164 LEWIAAGKDVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred HHHHHHCCCCCHHHHHHCCCCCEECCH
T ss_conf 735411797889999868986462580
No 99
>PRK08321 naphthoate synthase; Validated
Probab=96.77 E-value=0.0075 Score=38.46 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=90.3
Q ss_pred CCCEEEE--C-----CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE--------------CCCCCHH------------
Q ss_conf 4677998--7-----83189899999999999741157697699993--------------6876146------------
Q gi|254780272|r 41 KERIVFV--T-----GQIEDHMATLICAQLLFLEAENPQKEISLYIN--------------SPGGVVT------------ 87 (216)
Q Consensus 41 ~~Riifl--~-----g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~IN--------------SpGG~v~------------ 87 (216)
++.|..| + -.++.++...+...+-.++. +.+|...|= |-|||+.
T Consensus 32 ddGVa~ItLNRPek~NAl~~~m~~eL~~al~~~~~---D~~vrvvVLtG~G~~~~~~gRaFcAG~Dl~~~~~~~~~~~~~ 108 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARQ---SPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYEGG 108 (302)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCEEECCCCHHHHCCCCHHHCCC
T ss_conf 08589999758344589889999999999999875---899549999699887666656143267645412221000134
Q ss_pred ----------H----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CHHHHHHHHHHHH-HHHHHHH
Q ss_conf ----------7----8999999864487348998315566520000246777145544-1566441256666-5554128
Q gi|254780272|r 88 ----------A----GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP-NARILLHQPSGGF-SGQASDI 151 (216)
Q Consensus 88 ----------~----glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~p-ns~iMiHqps~~~-~G~~~di 151 (216)
. .+.+...|+.++.||...+-|.|.+.|.-|.++++ -|++.+ +++|.+-.+..|. .+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD--~~ias~~~a~f~~~~~~~G~~~~~~g-- 184 (302)
T PRK08321 109 ETADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQTDADVGSFDGGYG-- 184 (302)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCC--HHHHHHCCCEEECCCCCEECCCCCCC--
T ss_conf 33232015566567799999999629999999986804237499999603--15551126375245456621467554--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 99999999999999999998719998999997245858888999975886446045422510
Q gi|254780272|r 152 ERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 152 ~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
. ..+.+..|. .+-.+.+-.-..++|+||.++|||++|+.. .++.+
T Consensus 185 ---~-----------~~L~r~iG~--~~A~ellltG~~i~A~eA~~~GLv~~vv~~-~~l~~ 229 (302)
T PRK08321 185 ---S-----------AYLARQVGQ--KFAREIFFLGRTYSAEEAFQMGAVNAVVPH-AELET 229 (302)
T ss_pred ---C-----------CCCHHHCCH--HHHHHHHHCCCEECHHHHHHCCCCCEECCH-HHHHH
T ss_conf ---4-----------340255069--999999832856449999987984144385-78999
No 100
>PRK05617 enoyl-CoA hydratase; Provisional
Probab=96.71 E-value=0.016 Score=36.34 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE-EEECC-------CCCHHHH-------------------HHHHHHHHHCCCC
Q ss_conf 3189899999999999741157697699-99368-------7614678-------------------9999998644873
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISL-YINSP-------GGVVTAG-------------------MAIYDTMQFIKPP 102 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l-~INSp-------GG~v~~g-------------------laIyD~i~~i~~~ 102 (216)
.++.+|...+...|--.+. +..|.. .|.+. ||++.+- ..+.-.+...+.|
T Consensus 31 Al~~~m~~~l~~~l~~~~~---d~~v~~vvl~g~G~kaFcAGgDi~~l~~~~~~~~~~~~~~ff~~ey~l~~~i~~~~KP 107 (356)
T PRK05617 31 ALSLEMIRAIDQALDAWED---DDAVAAVVLEGAGERAFCAGGDIRALYEAARAGDALARDRFFREEYRLNARIARYPKP 107 (356)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCCEEEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999862---9982399997388771667754898975311368678999999999999999977999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 48998315566520000246777145544156644125666655541289999999999999999999871999899999
Q gi|254780272|r 103 ISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 103 V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
|....-|.|++-|.-|.++|+ .|.+.++++|-+-...-|..- |.-- ...+-++...+- .|.--||.
T Consensus 108 ~IA~i~G~~mGGG~~Lal~~d--~RIate~t~famPE~~iGl~P---d~G~-t~~L~rlpg~lG-~yL~LTG~------- 173 (356)
T PRK05617 108 YIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPETGIGFFP---DVGG-TYFLSRAPGALG-RYLALTGA------- 173 (356)
T ss_pred EEEEEECEEEECHHHHHHHCC--EEEECCCCEEECCCCCCCCCC---CCCC-EEEHHCCCCHHH-HHHHHHHC-------
T ss_conf 899951626644899976087--578526643515532447577---8740-133200743899-99998747-------
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 7245858888999975886446045
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
-+++.+|+.+||+|+.+.+
T Consensus 174 ------~l~~~Da~~~GlA~~~v~s 192 (356)
T PRK05617 174 ------RISAADALYAGLADHFVPS 192 (356)
T ss_pred ------CCCHHHHHHCCCCCEECCH
T ss_conf ------7699999874944223587
No 101
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.66 E-value=0.0046 Score=39.77 Aligned_cols=109 Identities=23% Similarity=0.384 Sum_probs=73.3
Q ss_pred HCCCCCCEEEEEECCC----------CCHHH-HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHH
Q ss_conf 1157697699993687----------61467-899999986448734899831556652000024677714554415664
Q gi|254780272|r 68 AENPQKEISLYINSPG----------GVVTA-GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136 (216)
Q Consensus 68 ~~~~~k~I~l~INSpG----------G~v~~-glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iM 136 (216)
++.=+-||-.+|++|| |.-.| +-.+.. |-.++.||.++++|--.|=|++=+.-|+ |=.|+.||.+-
T Consensus 155 AerF~~PIi~fiDT~GAYPGigAEerGQsEAIA~NL~E-ma~L~VPvic~vIGEGGSGGALaiGVGD--kv~MLeyS~YS 231 (329)
T TIGR00513 155 AERFNLPIITFIDTPGAYPGIGAEERGQSEAIAKNLRE-MARLKVPVICTVIGEGGSGGALAIGVGD--KVNMLEYSTYS 231 (329)
T ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHH-HHCCCCCEEEEEECCCCCHHHHHHHHHH--HHHHHHHHHHC
T ss_conf 77617985886538888756204450527899999899-7109988799985268614789998988--99887620220
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 4125666655541289999999999999999999871999899999724585888899997588644604
Q gi|254780272|r 137 LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 137 iHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~ 206 (216)
+=-|-+. |+=+ |+.-.+...-. +.| =++|..=+|.||||.||.
T Consensus 232 ViSPEGC----AaiL---Wkda~ka~~Aa----------------~am----kItA~dLkel~lID~iI~ 274 (329)
T TIGR00513 232 VISPEGC----AAIL---WKDASKAEKAA----------------EAM----KITAPDLKELGLIDSIIP 274 (329)
T ss_pred CCCHHHH----HHHC---CCCHHHHHHHH----------------HHH----CCCHHHHHHCCCCCCCCC
T ss_conf 0087889----9860---67962679999----------------983----789215664013431016
No 102
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.64 E-value=0.0045 Score=39.86 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=73.5
Q ss_pred HCCCCCCEEEEEECCCCCHHH-------HHHHHH---HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 115769769999368761467-------899999---9864487348998315566520000246777145544156644
Q gi|254780272|r 68 AENPQKEISLYINSPGGVVTA-------GMAIYD---TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137 (216)
Q Consensus 68 ~~~~~k~I~l~INSpGG~v~~-------glaIyD---~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMi 137 (216)
++.=.-||-.+|++||-.--- +-+|-- .|-.++.||..+++|.-.|=|++-+.-|+ +-+++.||..-.
T Consensus 146 AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP~I~iVIGEGgSGGALAi~vad--~V~mle~s~ySV 223 (317)
T COG0825 146 AEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSV 223 (317)
T ss_pred HHHHCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH--HHHHHHHCEEEE
T ss_conf 998599879995089877885456506289999999998579998799996578752467765778--999988441220
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 1256666555412899999999999999999998719998999997245858888999975886446045
Q gi|254780272|r 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 138 Hqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
-.|.+.+ + +-++. +.+.. +..+.| =++|.+-+++||||.||..
T Consensus 224 isPEG~A----s---ILWkD---------------~~ka~-eAAe~m----kita~dL~~lgiID~II~E 266 (317)
T COG0825 224 ISPEGCA----S---ILWKD---------------ASKAK-EAAEAM----KITAHDLKELGIIDGIIPE 266 (317)
T ss_pred CCHHHHH----H---HHHCC---------------HHHHH-HHHHHC----CCCHHHHHHCCCCCEECCC
T ss_conf 4731324----4---55258---------------32429-999982----7878889767975123468
No 103
>PRK08788 enoyl-CoA hydratase; Validated
Probab=96.61 E-value=0.011 Score=37.41 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=85.8
Q ss_pred CEEEEC------CCCCHHHHHHHHHHHHHHHHCCC--CCCEE-EEEEC-------CCCCHHH----------------HH
Q ss_conf 779987------83189899999999999741157--69769-99936-------8761467----------------89
Q gi|254780272|r 43 RIVFVT------GQIEDHMATLICAQLLFLEAENP--QKEIS-LYINS-------PGGVVTA----------------GM 90 (216)
Q Consensus 43 Riifl~------g~I~~~~a~~iia~Ll~L~~~~~--~k~I~-l~INS-------pGG~v~~----------------gl 90 (216)
.++|+. -.+++++-.++....-.+..... ..|+. +.+-| -|||... +-
T Consensus 25 ~~~W~~mrp~~Rpcf~~~Ll~el~~~~~~i~~~~~~~~~~vr~~Vl~S~~~gvF~aGgDL~~F~~~i~~~d~~~l~~ya~ 104 (286)
T PRK08788 25 NVLWMYMRAEPRPCFNLELVDDIMNLQRVIRQRLKDSGVPLDFVVLASLVPGVFNLGGDLSLFADLIREGDRDALLAYAR 104 (286)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 37875328988888999999999999999985146778822699997479986782738999999986456899999999
Q ss_pred HHHHH----HHHCCCCEEEEEE--CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_conf 99999----8644873489983--155665200002467771455441566441256666---55541289999999999
Q gi|254780272|r 91 AIYDT----MQFIKPPISTFCM--GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF---SGQASDIERHAQDIVKI 161 (216)
Q Consensus 91 aIyD~----i~~i~~~V~Ti~~--G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~---~G~~~di~~~a~el~~~ 161 (216)
..+|. ......|+.||+. |.|.+-|.-+..+++ .|++.++++|=+-+..-|. +|-.+ +
T Consensus 105 ~~~~~l~~~~~~~~~p~~tIAaV~G~a~GGG~elalacD--~~IA~~~A~fg~pEv~lGl~Pg~Gg~~----------~- 171 (286)
T PRK08788 105 RCVDGVHAFHTGLGAGAISIALVQGNALGGGFEAALSHH--TIIAEEGVKMGFPEILFNLFPGMGAYS----------F- 171 (286)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCEECHHHHHHHHHCC--EEEECCCCEEECCCCCCCCCCCCHHHH----------H-
T ss_conf 999999999974599984699984731257799999789--899739988636301348687860788----------9-
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 99999999987199989999972458588889999758864460454
Q gi|254780272|r 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSR 208 (216)
Q Consensus 162 ~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~ 208 (216)
+.+..|.. .-.+.+---..++|+||.+.||||+|++..
T Consensus 172 -------L~R~iG~~--~A~emiltG~~~sAeeA~~~GLVd~vvp~g 209 (286)
T PRK08788 172 -------LARRIGPQ--LAEELILSGKLYSAEELHDMGLVDQLVERG 209 (286)
T ss_pred -------HHHHHCHH--HHHHHHHHCCCCCHHHHHHCCCCCEEECCC
T ss_conf -------99886999--999999829916899999769983852898
No 104
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=96.53 E-value=0.02 Score=35.82 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCC------CCHHH------------HHHHHHHHHHCCCCEEEEEECC
Q ss_conf 318989999999999974115769769999-3687------61467------------8999999864487348998315
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYI-NSPG------GVVTA------------GMAIYDTMQFIKPPISTFCMGQ 110 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpG------G~v~~------------glaIyD~i~~i~~~V~Ti~~G~ 110 (216)
.++.++-..+...+-.++. +.++...| .+.| +|+.+ ...++..|+.++.||...+-|.
T Consensus 15 al~~~m~~eL~~a~~~~~~---d~~vr~vVl~g~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav~G~ 91 (240)
T PRK06072 15 ALNLETRNELISALREINA---DPKIRVVILTGEGRAFSVGADLSEISEDITEDLRDSFHPIIKEIRFSNKIYISAVNGV 91 (240)
T ss_pred CCCHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 9899999999999999975---8990699998799865515887887454468899999999999983899989998887
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 56652000024677714554415664412566665554128999999999999999999987199989999972458588
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~l 190 (216)
|.+.|.-|.++++ .|++.++++|-+-.+.-|... +.-. ...+. ++. |. ...+.+-.-..+
T Consensus 92 a~GgG~~la~~cD--~rias~~a~f~~~~~~~Gl~p---~~g~-~~~l~----~l~-------g~---~a~~~ll~g~~~ 151 (240)
T PRK06072 92 VAGAGISIALSTD--FRFASKDVRFVTAFQRIGLAP---DTGL-AYILL----KLG-------GV---RFYDHLILGGEF 151 (240)
T ss_pred EEHHHHHHHHHCC--EEEECCCCCEECCCCCCCCCC---CCCH-HHHHH----HHH-------HH---HHHHHHHCCCCC
T ss_conf 5568799998627--655302321006755605089---9769-99999----999-------99---999988618973
Q ss_pred CHHHHHHCCCCCEE
Q ss_conf 88999975886446
Q gi|254780272|r 191 SASEACDWGVVDKV 204 (216)
Q Consensus 191 sa~EA~eyGliD~I 204 (216)
+|+||.++|||+.+
T Consensus 152 ~a~eA~~~Glv~~~ 165 (240)
T PRK06072 152 TAEDAEEWGILKIS 165 (240)
T ss_pred CHHHHHHCCCCCCC
T ss_conf 79999987994116
No 105
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.05 E-value=0.14 Score=30.49 Aligned_cols=144 Identities=19% Similarity=0.279 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 783189899999999999741157697699993687----------6146789999998644873489983155665200
Q gi|254780272|r 48 TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117 (216)
Q Consensus 48 ~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG----------G~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~asl 117 (216)
+|-++.+.|.. .|+.+-|... -+-||-+..|.|| |-+.-|-.+.++.-..+.|..|+.++.+++.|-.
T Consensus 337 ~G~l~~~sa~K-aArFI~~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADK-AARFIRLCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred CCCCCHHHHHH-HHHHHHHHHC-CCCCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE
T ss_conf 66205577899-9999987401-389769995689878881677574887304888778663688699996444564546
Q ss_pred CCCCCCCCCE--EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---CCCCCCCH
Q ss_conf 0024677714--554415664412566665554128999999999999999999987199989999972---45858888
Q gi|254780272|r 118 LLSAGEKGMR--FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL---DRDHIMSA 192 (216)
Q Consensus 118 Il~aG~~g~R--~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~---~rD~~lsa 192 (216)
..++..-+.+ |+-||+++-.--|.+.+. + ...+++....+. .+..+.+++.. -++.+-++
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~egAv~-----i-~~~k~l~~~~~~---------~~~~~~~~~~~~~eY~~~~~~p 479 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGPEGAVS-----I-LYRKELAAAERP---------EEREALLRKQLIAEYEEQFSNP 479 (526)
T ss_pred EECCCCCCCCEEEECCCCEEECCCHHHHHH-----H-HHHHHHHHCCCC---------HHHHHHHHHHHHHHHHHHCCCH
T ss_conf 655776787347765753044047988899-----9-999987512460---------5678988888999998750445
Q ss_pred HHHHHCCCCCEEECCC
Q ss_conf 9999758864460454
Q gi|254780272|r 193 SEACDWGVVDKVLMSR 208 (216)
Q Consensus 193 ~EA~eyGliD~Ii~~~ 208 (216)
--|-+.|++|.|+.+.
T Consensus 480 ~~aa~r~~iD~vI~p~ 495 (526)
T COG4799 480 YYAAERGYIDAVIDPA 495 (526)
T ss_pred HHHHHHCCCCCCCCHH
T ss_conf 7898727788422879
No 106
>KOG1682 consensus
Probab=95.28 E-value=0.2 Score=29.47 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=80.7
Q ss_pred CEEEECCCCCH-----HHHHHHHHHHHHHHHCCCCCCEEEEEECC-C-----------------CCHHHH-----HHHHH
Q ss_conf 77998783189-----89999999999974115769769999368-7-----------------614678-----99999
Q gi|254780272|r 43 RIVFVTGQIED-----HMATLICAQLLFLEAENPQKEISLYINSP-G-----------------GVVTAG-----MAIYD 94 (216)
Q Consensus 43 Riifl~g~I~~-----~~a~~iia~Ll~L~~~~~~k~I~l~INSp-G-----------------G~v~~g-----laIyD 94 (216)
|.|+|..|-.- .|-+.+.+.|+ ..+...+....|=+- | .+..+- -.+.+
T Consensus 43 R~i~l~npKk~NtLSLaM~~~Lq~~ll---~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn 119 (287)
T KOG1682 43 REITLNNPKKLNTLSLAMMCALQDALL---KDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMN 119 (287)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH---HCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 024425843102655999999999985---12444651599993588522465457776247552078999999999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98644873489983155665200002467771455441566441256666555412899999999999999999998719
Q gi|254780272|r 95 TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCG 174 (216)
Q Consensus 95 ~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg 174 (216)
.|+..+.||..-+-|.|+-+|+-|.++++ .-.+.+||.|..--.-.|.+-....+. +-+.--+-...|.-.||
T Consensus 120 ~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCSTPGvA-----laRavpRkva~~ML~Tg 192 (287)
T KOG1682 120 DIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCSTPGVA-----LARAVPRKVAAYMLMTG 192 (287)
T ss_pred HHHCCCCCEEEEECCHHHHCCCEEEEEEE--EEEEECCCCCCCCCCCEEEEECCCCHH-----HHHHCCHHHHHHHHHHC
T ss_conf 98649986698854433421554888603--899705764458988545675685066-----76515526779998717
Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 998999997245858888999975886446045
Q gi|254780272|r 175 KTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 175 ~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
+|. +++||+--|++.+++..
T Consensus 193 ~Pi-------------~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682 193 LPI-------------TGEEALISGLVSKVVPA 212 (287)
T ss_pred CCC-------------CHHHHHHHHHHHHCCCH
T ss_conf 977-------------64999984046514778
No 107
>KOG1681 consensus
Probab=94.90 E-value=0.0057 Score=39.20 Aligned_cols=105 Identities=17% Similarity=0.301 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864487348998315566520000246777145544156644125666655541289999999999999999999
Q gi|254780272|r 91 AIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYV 170 (216)
Q Consensus 91 aIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a 170 (216)
.-|.+|..++.||.+-.-|.|-++|.-|..|++ -||+...+.|-+...-.|. +.|+ ..++++-..+-+
T Consensus 117 ~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDvgl---aADv----GTL~RlpkvVGn--- 184 (292)
T KOG1681 117 DTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDVGL---AADV----GTLNRLPKVVGN--- 184 (292)
T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCCCEEECC--EEEECCCCEEEEEEEEEEH---HHCH----HHHHHHHHHHCC---
T ss_conf 998999838901899987532055521012024--4564123014656542201---1131----467665687553---
Q ss_pred HHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 8719998999997245858888999975886446045422510
Q gi|254780272|r 171 KNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 171 ~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
++.-.=...+ -+-|+|.||+++||+-+|...|.++.+
T Consensus 185 ----~s~~~elafT--ar~f~a~EAl~~GLvSrvf~dk~~ll~ 221 (292)
T KOG1681 185 ----QSLARELAFT--ARKFSADEALDSGLVSRVFPDKEELLN 221 (292)
T ss_pred ----HHHHHHHHHH--HHHCCHHHHHHCCCCHHHCCCHHHHHH
T ss_conf ----6788888766--522340356643741010697899875
No 108
>TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process.
Probab=94.64 E-value=0.038 Score=34.03 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEC-CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986448734899831556652000024677714554-41566441256666----55541289999999999999
Q gi|254780272|r 90 MAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFAL-PNARILLHQPSGGF----SGQASDIERHAQDIVKIKRR 164 (216)
Q Consensus 90 laIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~-pns~iMiHqps~~~----~G~~~di~~~a~el~~~~~~ 164 (216)
|-+.-.|+++|-||...+-|.|.+=|-+|-.-|+ --.|. .||+|=.-.|-.|+ +|.+
T Consensus 105 L~~qr~IR~~PKpVia~V~Gya~GGGh~Lh~~CD--LTiAsre~A~fgQtgpkVGSFDgGyGsa---------------- 166 (278)
T TIGR01929 105 LEVQRLIRTLPKPVIAMVNGYAIGGGHVLHVVCD--LTIASREHARFGQTGPKVGSFDGGYGSA---------------- 166 (278)
T ss_pred HHHHHHHHCCCCCEEEEECCEEECCCEEEHHHHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHH----------------
T ss_conf 6554586418981688753753257620133230--2265321340147887735665634578----------------
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCC-----CHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 99999987199989999972458588-----88999975886446045422510
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLDRDHIM-----SASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~rD~~l-----sa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
++|+.-||.+ .|+.|| +|+||.+.|+|..||.. .++++
T Consensus 167 ---YlAR~vGQKk-------aREiwFlcrqY~A~~a~~MG~VN~VV~~-a~Le~ 209 (278)
T TIGR01929 167 ---YLARIVGQKK-------AREIWFLCRQYDAEEAEKMGLVNAVVPL-ADLEK 209 (278)
T ss_pred ---HHHHHHCCCH-------HHHEEECCCCCCHHHHHHCCCCEEECCH-HHHHH
T ss_conf ---9986405500-------0110001563256889737953010035-44558
No 109
>PRK10949 protease 4; Provisional
Probab=94.41 E-value=0.45 Score=27.21 Aligned_cols=188 Identities=15% Similarity=0.182 Sum_probs=105.1
Q ss_pred HHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEE--CCCCCHHHHHHHHHHHHHHHHCCCC-CCEEEEEEC-CCCCHHHH
Q ss_conf 6424575797665998401220034514677998--7831898999999999997411576-976999936-87614678
Q gi|254780272|r 14 VFLGLVPMVVEQTNRGERSYDIYSRLLKERIVFV--TGQIEDHMATLICAQLLFLEAENPQ-KEISLYINS-PGGVVTAG 89 (216)
Q Consensus 14 ~~~~~~p~~~e~~~~~~~~~Di~s~L~~~Riifl--~g~I~~~~a~~iia~Ll~L~~~~~~-k~I~l~INS-pGG~v~~g 89 (216)
-++.+-..++|+... .|.+..|.++ ++- +..+.+..-.+|+..+-.- .+|+. +-|.|-++. .||+...-
T Consensus 59 L~ldl~G~lvdq~~~----~~p~~~l~~~--~~g~~~~~~~e~~L~Div~aI~~A-a~D~rI~givLdl~~~~g~~~a~l 131 (618)
T PRK10949 59 LLLDISGVIVDKPSS----NNKLRQLGRQ--LLGASSDRLQENSLFDIVNTIRQA-KDDRNITGIVLDLKNFAGADQPSM 131 (618)
T ss_pred EEECCCCEEEECCCC----CCHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCHHHH
T ss_conf 998488607616888----8859999998--517887754410299999999985-149982599997777888788999
Q ss_pred HHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH--H----------------HHHH
Q ss_conf 999999864---487348998315566520000246777145544156644125666--6----------------5554
Q gi|254780272|r 90 MAIYDTMQF---IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG--F----------------SGQA 148 (216)
Q Consensus 90 laIyD~i~~---i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~--~----------------~G~~ 148 (216)
..|-++++. +.-|| ++.|--+|.+...|++... +=|+-|...+.++-.+.. + .|+.
T Consensus 132 ~eI~~AL~~FK~SGK~V--iAy~d~ysq~~YyLAS~AD-~I~L~P~G~v~l~Gl~~~~~y~K~lLdKlgI~~~vfrvG~Y 208 (618)
T PRK10949 132 QYIGKALREFRDSGKPV--YAVGDNYSQGQYYLASFAN-KIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTY 208 (618)
T ss_pred HHHHHHHHHHHHHCCEE--EEEECCCCCCCEEEEEECC-EEEECCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99999999999819939--9996677853010211077-78988996687866301177899999974982899981375
Q ss_pred ---------HHHH-----HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HCC---CCCCCHHHHHHCCCCCEEECC
Q ss_conf ---------1289-----9999999999999999998719998999997----245---858888999975886446045
Q gi|254780272|r 149 ---------SDIE-----RHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT----LDR---DHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 149 ---------~di~-----~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~----~~r---D~~lsa~EA~eyGliD~Ii~~ 207 (216)
.++. .....+..+.+.+.+..++.-+.+.+++... .++ -.=-+|++|++.||||++..
T Consensus 209 KSAvEpf~r~~MS~e~re~~~~~l~~lw~~~~~~Ia~~R~l~~~~l~~~~~~~~~~l~~~~g~~a~~Al~~gLVD~l~~- 287 (618)
T PRK10949 209 KSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALAS- 287 (618)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC-
T ss_conf 6746511144599999999999999999999999998659997897777999999998708840999987699854676-
Q ss_pred CCCCC
Q ss_conf 42251
Q gi|254780272|r 208 RIDIE 212 (216)
Q Consensus 208 ~~e~~ 212 (216)
+.|+.
T Consensus 288 ~~e~~ 292 (618)
T PRK10949 288 SAEIE 292 (618)
T ss_pred HHHHH
T ss_conf 88999
No 110
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=93.12 E-value=0.42 Score=27.42 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCH---------------------HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1898999999999997411576976999936-87614---------------------6789999998644873489983
Q gi|254780272|r 51 IEDHMATLICAQLLFLEAENPQKEISLYINS-PGGVV---------------------TAGMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 51 I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS-pGG~v---------------------~~glaIyD~i~~i~~~V~Ti~~ 108 (216)
++.++...+-.-|.-|++.+.-+-+ +.|+| ||.-| ..|-.+++-|..++-||.--..
T Consensus 38 L~k~l~~Ef~~v~~~l~~~~~v~Sa-VliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~~~~r~E~S~KPiVAAI~ 116 (740)
T TIGR02441 38 LSKELSAEFKEVLNELWTNEAVKSA-VLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQEMFERIEKSKKPIVAAIS 116 (740)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 1378999999999873068252468-897469987032562678987226899999867789999997428987587522
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 1556652000024677714554415664412566------6655541289999999999999999999871999899999
Q gi|254780272|r 109 GQAASMGSLLLSAGEKGMRFALPNARILLHQPSG------GFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 (216)
Q Consensus 109 G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~------~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~ 182 (216)
|.|.+=|--+..||+ .|.|.....-.+--|.. |..|+. .|-++-..=..+=..=||+
T Consensus 117 GsClGGGLElAlaCh--YRIAtkD~KT~LglPEVlLGlLPGaGgTq--------RLPKl~~vp~aLDm~LTGk------- 179 (740)
T TIGR02441 117 GSCLGGGLELALACH--YRIATKDRKTLLGLPEVLLGLLPGAGGTQ--------RLPKLTGVPAALDMMLTGK------- 179 (740)
T ss_pred CCCCCHHHHHHHHCC--CCEEECCCCCCCCCHHHHHHCCCCCCCCC--------CCCCHHHHHHHHHHHHCCC-------
T ss_conf 631041689987504--41122365453465068982488986442--------3640100023551332587-------
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 7245858888999975886446045
Q gi|254780272|r 183 TLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 183 ~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
-..|+.|++.||||.+|++
T Consensus 180 ------~i~ADrAKk~GiVD~lv~P 198 (740)
T TIGR02441 180 ------KIRADRAKKLGIVDQLVDP 198 (740)
T ss_pred ------CCCCCCCCCCCCEEEEECC
T ss_conf ------3012300114430022346
No 111
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=92.91 E-value=0.64 Score=26.28 Aligned_cols=125 Identities=20% Similarity=0.299 Sum_probs=71.4
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH----------HHHHHHHHCCCCEEEEEE-----CC
Q ss_conf 987831898999999999997411576976999936876146789----------999998644873489983-----15
Q gi|254780272|r 46 FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM----------AIYDTMQFIKPPISTFCM-----GQ 110 (216)
Q Consensus 46 fl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~gl----------aIyD~i~~i~~~V~Ti~~-----G~ 110 (216)
|++|.+...+.+.|+...-+ +....-|+-++..|.|--+.+|. +-.+.++.-.-|..+|.. |.
T Consensus 135 F~GGSmG~~~GEki~~a~e~--A~~~~~PlI~~~~SGGaRMQEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt~PttGGv 212 (288)
T PRK05654 135 FMGGSMGSVVGEKIVRAVER--ALEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 212 (288)
T ss_pred HHCCCCCHHHHHHHHHHHHH--HHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCE
T ss_conf 54266457899999999999--9974997899967876333274678998899999999999769968999668985894
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 56652000024677714554415664412566665554128999999999999999999987199989999972458588
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~l 190 (216)
.||-|.+ |+ --++-|+|.+- +-|.. . +.+.+++. +. +-|-
T Consensus 213 tASfa~l----gD--iiiaEp~A~Ig-------FAG~R--------V-----------Ieqti~~~-------LP-~~FQ 252 (288)
T PRK05654 213 SASFAML----GD--IIIAEPKALIG-------FAGPR--------V-----------IEQTVREK-------LP-EGFQ 252 (288)
T ss_pred EEEECCC----CC--EEEEECCCEEE-------ECCCH--------H-----------HHHHCCCC-------CC-CCHH
T ss_conf 4430247----87--79980584587-------31538--------9-----------99850898-------99-7401
Q ss_pred CHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 88999975886446045422510
Q gi|254780272|r 191 SASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 191 sa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
+|+-.++.|+||.|+. |.++.+
T Consensus 253 tae~ll~~G~iD~iv~-R~~lk~ 274 (288)
T PRK05654 253 RAEFLLEHGAIDMIVH-RRELRD 274 (288)
T ss_pred HHHHHHHCCCCCEEEC-HHHHHH
T ss_conf 1899997799636645-899999
No 112
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=90.06 E-value=0.25 Score=28.88 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=64.8
Q ss_pred HHHHH---HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999---98644873489983155665200002467771455441566441256666----555412899999999999
Q gi|254780272|r 90 MAIYD---TMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGF----SGQASDIERHAQDIVKIK 162 (216)
Q Consensus 90 laIyD---~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~----~G~~~di~~~a~el~~~~ 162 (216)
+.+.| .|+.++.||...+-|.|.+=|-++-.-++ --.+..|++|=..-|..|. +|..
T Consensus 103 LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCD--LTiAa~nA~FgQTgp~VGSFD~G~Gs~-------------- 166 (282)
T COG0447 103 LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCD--LTIAADNAIFGQTGPKVGSFDGGYGSS-------------- 166 (282)
T ss_pred CCCHHHHHHHHHCCCCEEEEECCEEECCCCEEEEEEE--EEEECCCCHHCCCCCCCCCCCCCCCHH--------------
T ss_conf 0002388898748965599970375058627999854--255000131137899834205864478--------------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCC-----CCHHHHHHCCCCCEEECC
Q ss_conf 999999998719998999997245858-----888999975886446045
Q gi|254780272|r 163 RRLNEIYVKNCGKTYEEVEKTLDRDHI-----MSASEACDWGVVDKVLMS 207 (216)
Q Consensus 163 ~~l~~i~a~~Tg~~~e~i~~~~~rD~~-----lsa~EA~eyGliD~Ii~~ 207 (216)
.+|+.-|+.. .|+.| .+|+||++.|+|..|+..
T Consensus 167 -----ylar~VGqKk-------ArEIwfLcR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 167 -----YLARIVGQKK-------AREIWFLCRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred -----HHHHHHHHHH-------HHHHHHHHHCCCHHHHHHCCCEEEECCH
T ss_conf -----9999864256-------5654123310569999856871231338
No 113
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=89.84 E-value=1.7 Score=23.56 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=67.1
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH----HHH---HHH----HHCCCCEEEEEE-----C
Q ss_conf 987831898999999999997411576976999936876146789----999---998----644873489983-----1
Q gi|254780272|r 46 FVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGM----AIY---DTM----QFIKPPISTFCM-----G 109 (216)
Q Consensus 46 fl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~gl----aIy---D~i----~~i~~~V~Ti~~-----G 109 (216)
|++|-+...+.+.|+...- .+....-|+-++--|.|--+..|. .+- -++ +.-+-|..+|.. |
T Consensus 154 FmGGSMGsvvGEki~ra~e--~A~~~k~PlIi~saSGGARMQEGilSLMQMaKts~Al~~~~~~~~lpyIsvlt~PTtGG 231 (305)
T CHL00174 154 FMGGSMGSVVGEKITRLIE--YATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 231 (305)
T ss_pred CCCCCCHHHHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 1156520788999999999--99973997899907876343462778987799999999998457873899973788778
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 55665200002467771455441566441256666555412899999999999999999998719998999997245858
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHI 189 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~ 189 (216)
..||-|. -|+ --++-|+|.+- +-|.. .+ . +.+.+++. +-|
T Consensus 232 VtASfA~----lgD--iiiAEP~AlIG-------FAG~R--------VI-----------e-------qTi~~~LP-egF 271 (305)
T CHL00174 232 VTASFGM----LGD--IIIAEPNAYIA-------FAGKR--------VI-----------E-------QTLNKTVP-EGS 271 (305)
T ss_pred CEEEECC----CCC--EEEECCCCEEE-------ECCCH--------HH-----------H-------HHHCCCCC-CCC
T ss_conf 0124102----566--58975886676-------05617--------88-----------8-------86189899-863
Q ss_pred CCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 888999975886446045422510
Q gi|254780272|r 190 MSASEACDWGVVDKVLMSRIDIEE 213 (216)
Q Consensus 190 lsa~EA~eyGliD~Ii~~~~e~~~ 213 (216)
=+|+-.++.|+||.|+. |.++.+
T Consensus 272 QtaEfllehG~iD~IV~-R~~lk~ 294 (305)
T CHL00174 272 QAAEYLFHKGLFDLIVP-RNLLKG 294 (305)
T ss_pred CCHHHHHHCCCCCEEEC-HHHHHH
T ss_conf 22699997799716765-899999
No 114
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=82.53 E-value=4.2 Score=21.12 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=43.5
Q ss_pred HCCCCCCEEEEEECCCC---CHHHHH-------HH---HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHH
Q ss_conf 11576976999936876---146789-------99---999864487348998315566520000246777145544156
Q gi|254780272|r 68 AENPQKEISLYINSPGG---VVTAGM-------AI---YDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNAR 134 (216)
Q Consensus 68 ~~~~~k~I~l~INSpGG---~v~~gl-------aI---yD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~ 134 (216)
..+++.||-+.+++||= --.+-+ .+ |+.-+.--.|+.++.+|.+.|=|++-..-.. ..-+++|.+
T Consensus 62 ~~d~krPIv~lvD~~gq~~g~r~E~~Gi~~~~A~l~~~~~~Ar~~GHp~i~lv~g~a~sGafla~gl~a-~~~~Alp~a- 139 (238)
T TIGR03134 62 EADPKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGA- 139 (238)
T ss_pred HHCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCHHCCCCC-
T ss_conf 838999779998077754560478723999999999999999854998699996573448999866420-611127874-
Q ss_pred HHHH
Q ss_conf 6441
Q gi|254780272|r 135 ILLH 138 (216)
Q Consensus 135 iMiH 138 (216)
|+|
T Consensus 140 -~i~ 142 (238)
T TIGR03134 140 -MVH 142 (238)
T ss_pred -HHH
T ss_conf -353
No 115
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.22 E-value=2.3 Score=22.72 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=74.7
Q ss_pred CCCEEEE-E----CCCCCCCCCHHHHHHCCCEEEECCC-----CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC------
Q ss_conf 5757976-6----5998401220034514677998783-----1898999999999997411576976999936------
Q gi|254780272|r 18 LVPMVVE-Q----TNRGERSYDIYSRLLKERIVFVTGQ-----IEDHMATLICAQLLFLEAENPQKEISLYINS------ 81 (216)
Q Consensus 18 ~~p~~~e-~----~~~~~~~~Di~s~L~~~Riifl~g~-----I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS------ 81 (216)
+.|-+++ + ++.|...-.+|+. .|-|+-| ...++...++..+ +.-..+..|-..|=+
T Consensus 14 ~~~~~~~ekrp~~~~~g~v~~gly~A-----wITINRP~~yNAft~~tVkEli~AF---~~A~~D~sVgvIVLTGaGDKA 85 (360)
T TIGR03200 14 VCPGVLYEKRPAKRPDGNVVPGLYNA-----WIILDNPKQYNSYTTDMVKAIILAF---RRASSDRDVVAVVFTAVGDKA 85 (360)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHE-----EEEECCHHHHCCCCHHHHHHHHHHH---HHHCCCCCEEEEEEECCCCCC
T ss_conf 46743651476769998765441322-----6783587770478889999999999---972428852399995587611
Q ss_pred --CCCCHH------H------------HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf --876146------7------------89999998644873489983155665200002467771455441566441256
Q gi|254780272|r 82 --PGGVVT------A------------GMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS 141 (216)
Q Consensus 82 --pGG~v~------~------------glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps 141 (216)
.||++. + ..++.+.|+.++.||..-+-|+|.+-|..|-++++ -..+..|++|=.--|.
T Consensus 86 FCTGGDqke~ae~yag~p~e~~~~~~l~~~m~~~Ir~cpKPVIArVNG~AVGGG~eL~maCD--LtIAsD~A~FGQ~GPK 163 (360)
T TIGR03200 86 FCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQAGPK 163 (360)
T ss_pred EECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCEEEEEEH--HHHHHHHHHHCCCCCC
T ss_conf 21587678754577788523577878999999998579987699871588438717887630--1345444454278888
Q ss_pred HH
Q ss_conf 66
Q gi|254780272|r 142 GG 143 (216)
Q Consensus 142 ~~ 143 (216)
.|
T Consensus 164 VG 165 (360)
T TIGR03200 164 HG 165 (360)
T ss_pred CC
T ss_conf 67
No 116
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=75.71 E-value=5.7 Score=20.25 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_conf 7899999986448734899831556652000024677714554415664412566------6655541289999999999
Q gi|254780272|r 88 AGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSG------GFSGQASDIERHAQDIVKI 161 (216)
Q Consensus 88 ~glaIyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~------~~~G~~~di~~~a~el~~~ 161 (216)
-|-.++.-|..++.+|.-=.-|-|-+=|--|..||+ .|.|+-.-.-++=-|.. |..|+ +-|-|+
T Consensus 84 ~Gq~~~~~l~ALp~~VvAAIHGaCLGGGLELALACH--~RvCsdD~KT~LGlPEVQLGLLPGsGGT--------QRLPRL 153 (732)
T TIGR02440 84 KGQELFAELEALPIPVVAAIHGACLGGGLELALACH--SRVCSDDDKTVLGLPEVQLGLLPGSGGT--------QRLPRL 153 (732)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCC--CCEECCCCCEEECCCCHHHCCCCCCCCC--------CCCHHH
T ss_conf 658999864117840788504886550489999708--7602589872306860401245877763--------300258
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 9999999998719998999997245858888999975886446045
Q gi|254780272|r 162 KRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 162 ~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
--.-..+=.-=||| -+.|++|++.||||+||..
T Consensus 154 vGv~~ALdMiLTGK-------------QlRakqAlklGLV~dvVP~ 186 (732)
T TIGR02440 154 VGVSTALDMILTGK-------------QLRAKQALKLGLVDDVVPR 186 (732)
T ss_pred HHHHHHHHHHHCCC-------------CCCHHHHHHCCCCCCCCCH
T ss_conf 77988988763032-------------1015778525872324641
No 117
>pfam08496 Peptidase_S49_N Peptidase family S49 N-terminal. This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343).
Probab=74.39 E-value=4.5 Score=20.93 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=28.0
Q ss_pred EEEE---CCCCCHH----HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH-HHH
Q ss_conf 7998---7831898----9999999999974115769769999368761467-899
Q gi|254780272|r 44 IVFV---TGQIEDH----MATLICAQLLFLEAENPQKEISLYINSPGGVVTA-GMA 91 (216)
Q Consensus 44 iifl---~g~I~~~----~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~-gla 91 (216)
.+|+ .|+|.-+ +-+.|.|- | ..-.+.+.+-+-+.||||-|.. |+|
T Consensus 98 rvfVldF~GDi~As~V~~LREEItAI-L--~~A~~~DEVllrLES~GG~Vh~YGLA 150 (154)
T pfam08496 98 RLFVLDFKGDIDASEVESLREEITAI-L--SVAKPEDEVLLRLESGGGVVHGYGLA 150 (154)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-H--HHCCCCCEEEEEEECCCCEEECCCHH
T ss_conf 18999535872667668899999999-9--73899998999986899742040136
No 118
>KOG1283 consensus
Probab=72.19 E-value=8.3 Score=19.25 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHH---HHCCCCCCEEEEEECCCCCHHH--HHHHHHHHHH--CCCCEEEEEEC--------CCCCCCC
Q ss_conf 898999999999997---4115769769999368761467--8999999864--48734899831--------5566520
Q gi|254780272|r 52 EDHMATLICAQLLFL---EAENPQKEISLYINSPGGVVTA--GMAIYDTMQF--IKPPISTFCMG--------QAASMGS 116 (216)
Q Consensus 52 ~~~~a~~iia~Ll~L---~~~~~~k~I~l~INSpGG~v~~--glaIyD~i~~--i~~~V~Ti~~G--------~aaS~as 116 (216)
+.+.|.+++..|.-+ ..|-...|.+|+--|.||-+.+ ++.++|+|+. +++...-|.+| .+.|-|.
T Consensus 98 ~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D~V~SWGP 177 (414)
T KOG1283 98 NKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPEDFVFSWGP 177 (414)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCHHHHHHCCHH
T ss_conf 79999999999999974494314555499980006601033304678888538501021047736766686675520068
Q ss_pred CCCCCC
Q ss_conf 000246
Q gi|254780272|r 117 LLLSAG 122 (216)
Q Consensus 117 lIl~aG 122 (216)
+|..-+
T Consensus 178 ~L~~~S 183 (414)
T KOG1283 178 LLKHVS 183 (414)
T ss_pred HHHHHH
T ss_conf 887640
No 119
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155 Two different types of thiolase , , are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=68.44 E-value=1.2 Score=24.53 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 999998719998999997245858888999975886446045
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
.+..|+.-+.+.++-.++-- .-+--|.+|.+-|..++-|.+
T Consensus 183 AE~~A~~~~I~R~~qDe~A~-~Sh~~Aa~A~~~G~f~~Ei~P 223 (447)
T TIGR01930 183 AENLAKKYGISREEQDEYAL-RSHQRAAKAWEEGRFKDEIVP 223 (447)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCHHHCCCC
T ss_conf 99998874888889999999-999999999970452111133
No 120
>pfam06833 MdcE Malonate decarboxylase gamma subunit (MdcE). This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase.
Probab=63.62 E-value=12 Score=18.15 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=71.9
Q ss_pred CCEEEECC-----CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC---CCHHHHHHHHHH----------HHHCCCCE
Q ss_conf 67799878-----3189899999999999741157697699993687---614678999999----------86448734
Q gi|254780272|r 42 ERIVFVTG-----QIEDHMATLICAQLLFLEAENPQKEISLYINSPG---GVVTAGMAIYDT----------MQFIKPPI 103 (216)
Q Consensus 42 ~Riifl~g-----~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG---G~v~~glaIyD~----------i~~i~~~V 103 (216)
.|.|-+-| +|.-+.+-.+-...+-.-.++++.||-+.+++|| |.-.+-+.|+-+ -+.--.||
T Consensus 29 ~r~vaViG~~~~~~vG~~ea~~LA~~Vld~i~~~~~rpIl~lvD~~~Q~~~rrdEllGi~~~lAhla~~~~~AR~~GHpv 108 (234)
T pfam06833 29 VGPVAVIGTANGGEVGVLEAIALAAAVLEAIEQRDKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPV 108 (234)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 85699983589874409999999999999997199987799980776543348998409999999999999999759976
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 89983155665200002467771455441566441256666555412899999999999999999998719998999997
Q gi|254780272|r 104 STFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKT 183 (216)
Q Consensus 104 ~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~ 183 (216)
..+.+|.+.|-|++- .+=....-+++|. .|+|-..- .-.++-|.+|.|+.++.
T Consensus 109 I~Lv~g~a~sGaFla-~gl~a~~~~ALp~--a~i~vM~~------------------------~a~ARvTk~~ve~L~~l 161 (234)
T pfam06833 109 IGLLYGKAMSGAFLA-HGLQANRLIALPG--AMVHVMDL------------------------AAMARVTKRSVEALEAL 161 (234)
T ss_pred EEEEECCCCCHHHHH-HHHHHCCHHCCCC--CHHHCCCH------------------------HHHHHHHHCCHHHHHHH
T ss_conf 998754401189999-8876352311798--50311784------------------------77677740779999988
Q ss_pred HCCCCC--CCHHHHHHCCCCCEEEC
Q ss_conf 245858--88899997588644604
Q gi|254780272|r 184 LDRDHI--MSASEACDWGVVDKVLM 206 (216)
Q Consensus 184 ~~rD~~--lsa~EA~eyGliD~Ii~ 206 (216)
.+.--- ...+.=...|.++++++
T Consensus 162 a~s~pvfApgv~n~~~lG~v~~l~~ 186 (234)
T pfam06833 162 AASSPVFAPGVDNYASMGALWALWD 186 (234)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 6349976778789998301898836
No 121
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=61.87 E-value=2.3 Score=22.72 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC------------------CCCCHHH-HHH-------HHHHHHHCCCCEE
Q ss_conf 1898999999999997411576976999936------------------8761467-899-------9999864487348
Q gi|254780272|r 51 IEDHMATLICAQLLFLEAENPQKEISLYINS------------------PGGVVTA-GMA-------IYDTMQFIKPPIS 104 (216)
Q Consensus 51 I~~~~a~~iia~Ll~L~~~~~~k~I~l~INS------------------pGG~v~~-gla-------IyD~i~~i~~~V~ 104 (216)
.+++|=..+-.- |+....+.+|...|=+ |||...+ |.. +.=-++.++-||.
T Consensus 23 F~~~MH~~l~~a---L~~ver~~~~R~l~LTGAGRGFcAGQDL~dr~v~~~G~~pDLG~~ve~fYnPLvRrL~~Lp~PVv 99 (259)
T TIGR02280 23 FTAEMHAELREA---LERVERDDDARALLLTGAGRGFCAGQDLSDRNVTPGGAAPDLGETVEKFYNPLVRRLRALPKPVV 99 (259)
T ss_pred HHHHHHHHHHHH---HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHCCCCEE
T ss_conf 008899999999---86640157545888738887434465554467887422585322177750748999972699779
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 998315566520000246777145544156644125666----6555412899999999999999999998719998999
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG----FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEV 180 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~----~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i 180 (216)
.=+=|.||++|+=|..+|+ --.+-.|++|..--..-| +.|+-. --+-+=+-|..=..++. +
T Consensus 100 ~AVNGVAAGAGAnLALAcD--IvlAa~sA~FiqAF~klGL~PDsGGTw~----LPr~vG~ARA~GLAllG-------~-- 164 (259)
T TIGR02280 100 CAVNGVAAGAGANLALACD--IVLAARSAKFIQAFAKLGLIPDSGGTWL----LPRLVGRARAMGLALLG-------E-- 164 (259)
T ss_pred EEECCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCHHH----HHHHHHHHHHHHHHHHC-------C--
T ss_conf 8535103447788887511--9999875579988875246779850004----66899999999988504-------8--
Q ss_pred HHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 99724585888899997588644604
Q gi|254780272|r 181 EKTLDRDHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 181 ~~~~~rD~~lsa~EA~eyGliD~Ii~ 206 (216)
-|||++|.++|||=.++.
T Consensus 165 --------~LdA~~A~~WGLIW~~v~ 182 (259)
T TIGR02280 165 --------KLDARTAAEWGLIWQVVD 182 (259)
T ss_pred --------CCCHHHHHHCCCEEEEEH
T ss_conf --------468688974386442200
No 122
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.39 E-value=13 Score=17.90 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=40.5
Q ss_pred CCEEEECCCCCHHHH-HHHHHHHHHHHHCCCCCCEEEEEEC-CCCCHHHHH-HHHH-HHHHCCCCEEEEEECCC
Q ss_conf 677998783189899-9999999997411576976999936-876146789-9999-98644873489983155
Q gi|254780272|r 42 ERIVFVTGQIEDHMA-TLICAQLLFLEAENPQKEISLYINS-PGGVVTAGM-AIYD-TMQFIKPPISTFCMGQA 111 (216)
Q Consensus 42 ~Riifl~g~I~~~~a-~~iia~Ll~L~~~~~~k~I~l~INS-pGG~v~~gl-aIyD-~i~~i~~~V~Ti~~G~a 111 (216)
+||+|+|+-|++... ...++. +|...-++..+.+ ||. -||+-..++ .-.+ -+...++++.++++|.=
T Consensus 2 ~rIv~~GDSiT~g~g~~~~~~~--~l~~~~~~~~~~v-iN~Gi~G~t~~~~~~r~~~~v~~~~Pd~Vii~~G~N 72 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVET--YLAARYPELKLTF-RNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGIN 72 (191)
T ss_pred CEEEEECCCHHHCCCCHHHHHH--HHHHHCCCCCCEE-EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 9999988874309966468999--9998679998659-984366887777999989887327999999984661
No 123
>KOG1679 consensus
Probab=54.40 E-value=7.5 Score=19.52 Aligned_cols=136 Identities=19% Similarity=0.283 Sum_probs=76.4
Q ss_pred HHHHHHHHHHH-HHHHCCCCC-CEEEEEEC--CC-----CC---------------HHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89999999999-974115769-76999936--87-----61---------------467899999986448734899831
Q gi|254780272|r 54 HMATLICAQLL-FLEAENPQK-EISLYINS--PG-----GV---------------VTAGMAIYDTMQFIKPPISTFCMG 109 (216)
Q Consensus 54 ~~a~~iia~Ll-~L~~~~~~k-~I~l~INS--pG-----G~---------------v~~glaIyD~i~~i~~~V~Ti~~G 109 (216)
+....++.+|. .|+....+. -=.+.|+| || -+ |..--.+++.|..++.||..-.-|
T Consensus 54 sl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG 133 (291)
T KOG1679 54 SLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDG 133 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCC
T ss_conf 07799999999999997407862699982389860544746576512799999999999999999998578650111020
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 5566520000246777145544156644125-6---66655541289999999999999999999871999899999724
Q gi|254780272|r 110 QAASMGSLLLSAGEKGMRFALPNARILLHQP-S---GGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLD 185 (216)
Q Consensus 110 ~aaS~aslIl~aG~~g~R~~~pns~iMiHqp-s---~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~ 185 (216)
.|-+-|--+..+++ -|.+..++.+=+-.. + -|..|+- ++-+.+---.++ +.+-
T Consensus 134 ~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGtQ-----------RLpR~vg~alaK----------ELIf 190 (291)
T KOG1679 134 AALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGTQ-----------RLPRIVGVALAK----------ELIF 190 (291)
T ss_pred HHCCCCHHHHHHCC--CEEHHHHCCCCCCCCCEEEECCCCCCC-----------HHHHHHHHHHHH----------HHHH
T ss_conf 00065156555401--100200030042001235510898641-----------237877488887----------6732
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 585888899997588644604542251
Q gi|254780272|r 186 RDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 186 rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
.-.-+++.||.+.|+|.++++.+.|-+
T Consensus 191 tarvl~g~eA~~lGlVnhvv~qneegd 217 (291)
T KOG1679 191 TARVLNGAEAAKLGLVNHVVEQNEEGD 217 (291)
T ss_pred HHEECCCHHHHHCCHHHHHHHCCCCCC
T ss_conf 210126366775006799986276444
No 124
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=50.97 E-value=20 Score=16.82 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=17.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 9999987199989999972458588889999758864460
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVL 205 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii 205 (216)
.+.+|++.|.+.|+..++-- .-+-.+.+|.+-|.-++.+
T Consensus 182 AE~~A~~~gIsReeqD~~A~-~Sh~rA~~A~~~G~f~~eI 220 (428)
T PRK09268 182 CAITAKEWGISREAQDELAA-ASHQNLAAAYERGFFDDLI 220 (428)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCCCCC
T ss_conf 99999995989999999999-9999999999829862210
No 125
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=49.92 E-value=21 Score=16.72 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=48.6
Q ss_pred CCHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 2200345146779987-8318989999999999974115769769999-36876146789999998644873489
Q gi|254780272|r 33 YDIYSRLLKERIVFVT-GQIEDHMATLICAQLLFLEAENPQKEISLYI-NSPGGVVTAGMAIYDTMQFIKPPIST 105 (216)
Q Consensus 33 ~Di~s~L~~~Riifl~-g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~I-NSpGG~v~~glaIyD~i~~i~~~V~T 105 (216)
.|+||+.|.. |=||. ....+..+.++...|.-|+.+.-+ -+-|=+ |-|||.+.++..|-+..-- ..+|.+
T Consensus 40 ~DPyS~Y~~~-IGyI~i~~F~~~t~~~~~~al~~l~~~g~~-glIlDLR~NpGG~l~~av~ia~~Fl~-~g~iv~ 111 (211)
T cd07560 40 LDPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQGMK-GLILDLRNNPGGLLDEAVEIADLFLP-GGPIVS 111 (211)
T ss_pred CCCCHHCCCC-EEEEEEEEECCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCHHHHHHHHHHHCC-CCCEEE
T ss_conf 2985011696-399994255652199999999999976996-79998789998159999999998649-972999
No 126
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=49.05 E-value=13 Score=17.92 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCCCCCCCHHHHHHC---CCEEEECCCCCHHHHHHHH
Q ss_conf 5998401220034514---6779987831898999999
Q gi|254780272|r 26 TNRGERSYDIYSRLLK---ERIVFVTGQIEDHMATLIC 60 (216)
Q Consensus 26 ~~~~~~~~Di~s~L~~---~Riifl~g~I~~~~a~~ii 60 (216)
...+++...+++-||. +.|||||+.|+|++-+.|-
T Consensus 99 D~~~ekE~~v~NTLl~KQVDGiIfmG~~Ite~~re~F~ 136 (332)
T TIGR01481 99 DEDEEKEVQVLNTLLSKQVDGIIFMGGEITEKLREEFS 136 (332)
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHH
T ss_conf 89875216766653310101134443021089999971
No 127
>pfam08004 DUF1699 Protein of unknown function (DUF1699). This family contains many archaeal proteins which have very conserved sequences.
Probab=45.24 E-value=17 Score=17.19 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
Q ss_conf 666655541289999999999999999999871999899999724585888899
Q gi|254780272|r 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194 (216)
Q Consensus 141 s~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~E 194 (216)
.|..||...|+..+..--...-+++.++- .-|.+.|+|.+.+.|+.-++|+=
T Consensus 73 eGDVwGHrkDinEYy~i~~~viekI~el~--~eG~s~E~i~~k~~re~kl~p~m 124 (131)
T pfam08004 73 EGDVWGHRKDINEYYTVSQSVIERIRELK--AEGISNEEIAEKLSRESKLSPDM 124 (131)
T ss_pred ECCCCCCCCCCHHHCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 32442221233304014799999999999--76998899999987642489999
No 128
>KOG1389 consensus
Probab=44.15 E-value=21 Score=16.69 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCC-CCCEEECCC
Q ss_conf 999999987199989999972458588889999758-864460454
Q gi|254780272|r 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWG-VVDKVLMSR 208 (216)
Q Consensus 164 ~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyG-liD~Ii~~~ 208 (216)
...+..+++-|.+.++-.+. .-+-+--|-+|..-| |-|||+.-+
T Consensus 184 itsEnva~rfgvsR~eqD~~-Av~S~kkAa~A~~~G~f~dEIiPv~ 228 (435)
T KOG1389 184 ITSENVAERFGVSREEQDEA-AVDSHKKAAAATAKGKFKDEIIPVK 228 (435)
T ss_pred CCHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHCCCCHHHEEEEE
T ss_conf 31577898729776564688-8887899998764486323321100
No 129
>KOG0016 consensus
Probab=40.71 E-value=12 Score=18.26 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=45.9
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998644873489983155665200002467771455441566441256666555412899999999999999999998
Q gi|254780272|r 92 IYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVK 171 (216)
Q Consensus 92 IyD~i~~i~~~V~Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~ 171 (216)
..|+.-..+-|+....-|-|-+.|+-||.-++ --++...+. +|-|-+.. |+..|--...- + -+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~V~A~Dka~--F~TPfa~l-Gq~PEG~Ss~t-~-----------p~ 161 (266)
T KOG0016 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCD--YVWASDKAW--FQTPFAKL-GQSPEGCSSVT-L-----------PK 161 (266)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH--EEEECCCEE--EECCCHHC-CCCCCCCEEEE-E-----------HH
T ss_conf 99997458987799943773131257764311--688525237--85560122-77988620466-2-----------17
Q ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 719998999997245858888999975886446045
Q gi|254780272|r 172 NCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMS 207 (216)
Q Consensus 172 ~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~~ 207 (216)
..|. .+-.+.+---.=++|+||.++|||++|...
T Consensus 162 imG~--~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016 162 IMGS--ASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred HHCH--HHHHHHHHHCCCCCHHHHHHCCCHHHHCCH
T ss_conf 5352--568889993883308899863825320675
No 130
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=39.25 E-value=30 Score=15.68 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=74.0
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEEECCCCCHHHH---H-HHHHHHH---HC--CCCEEEEEECC--
Q ss_conf 987831898999999999997411576----97699993687614678---9-9999986---44--87348998315--
Q gi|254780272|r 46 FVTGQIEDHMATLICAQLLFLEAENPQ----KEISLYINSPGGVVTAG---M-AIYDTMQ---FI--KPPISTFCMGQ-- 110 (216)
Q Consensus 46 fl~g~I~~~~a~~iia~Ll~L~~~~~~----k~I~l~INSpGG~v~~g---l-aIyD~i~---~i--~~~V~Ti~~G~-- 110 (216)
|++|.+-+-.+..|+..| -+..++.. .|+-++..|.|+-..++ + ++-++++ .. ..|+..+..|.
T Consensus 79 v~GGS~Gevhg~KI~~ll-elA~~~~~~~~~~pvV~~~esGG~RlqE~~~gL~a~aei~~a~~~lsg~VP~I~VI~G~~g 157 (302)
T PRK07189 79 FMGGSVGEVHGAKLAGLL-ELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (302)
T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 126426488899999999-9999817557888889996588888565530588999999999984689988999448765
Q ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHHHHHH-----HHH---------------HHHHH----HHH-HHHHHHHHHHHHH
Q ss_conf 5665200002467771455441566441256-----666---------------55541----289-9999999999999
Q gi|254780272|r 111 AASMGSLLLSAGEKGMRFALPNARILLHQPS-----GGF---------------SGQAS----DIE-RHAQDIVKIKRRL 165 (216)
Q Consensus 111 aaS~aslIl~aG~~g~R~~~pns~iMiHqps-----~~~---------------~G~~~----di~-~~a~el~~~~~~l 165 (216)
|+.=+++++.+++ .-.+.+++++-+--|. +|. .|+.- +.. .-.+.+..+|+..
T Consensus 158 CfGG~a~~aal~D--~IImT~~arigm~GP~VIE~~~G~~efds~dr~~vw~~~gg~~r~~~g~~~~~~~d~~~~~r~~~ 235 (302)
T PRK07189 158 CFGGMGIAAGLCS--YLVVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVADDVAAFRAAA 235 (302)
T ss_pred CCHHHHHHHHHCC--EEEEECCCEEECCCHHHHHHCCCHHHHCCCCCCEEEEECCCCEEEEECCCHHHCCCCHHHHHHHH
T ss_conf 6168889987285--89982787561446488744028265444664105771575045640545002146499999999
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 999998719998999
Q gi|254780272|r 166 NEIYVKNCGKTYEEV 180 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i 180 (216)
.+.+.+-...+.+..
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (302)
T PRK07189 236 IALLARGPAFPAAHR 250 (302)
T ss_pred HHHHHCCCCCCHHHH
T ss_conf 999805888886899
No 131
>TIGR00954 3a01203 Peroxysomal long chain fatty acyl transporter; InterPro: IPR005283 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). The members of this family are integral membrane proteins and they are involved in the import of activated long-chain fatty acids from the cytosol to the peroxisomal matrix. ; GO: 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=34.40 E-value=7.2 Score=19.63 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=15.5
Q ss_pred CEEECCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1455441566441256-6665554128999999999999999999
Q gi|254780272|r 126 MRFALPNARILLHQPS-GGFSGQASDIERHAQDIVKIKRRLNEIY 169 (216)
Q Consensus 126 ~R~~~pns~iMiHqps-~~~~G~~~di~~~a~el~~~~~~l~~i~ 169 (216)
.||. ||++..-.=. .-..|+..|.+.-.....++-..|..++
T Consensus 297 yRy~--hSrli~NSEEIAFY~G~~~E~~~~~~~f~~Lv~~l~~~i 339 (788)
T TIGR00954 297 YRYV--HSRLISNSEEIAFYQGNKVEKETVKSSFQKLVEHLNLII 339 (788)
T ss_pred EEEC--CHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0220--001103236888726888899999999999999999999
No 132
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=33.80 E-value=37 Score=15.14 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=17.2
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 999998719998999997245858888999975886
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli 201 (216)
.+.++++.|.+.|+-.++--+ -+-.+.+|.+-|.-
T Consensus 167 AE~~A~~~~IsReeqD~~A~~-Sh~rA~~A~~~G~f 201 (401)
T PRK09050 167 AENVAEDYNISRADQDAFALR-SQQRAAAAQAAGFL 201 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf 999999959999999999999-99999998764983
No 133
>PRK06025 acetyl-CoA acetyltransferase; Provisional
Probab=33.75 E-value=37 Score=15.13 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEEEC
Q ss_conf 999998719998999997245858888999975886-44604
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKVLM 206 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~Ii~ 206 (216)
.+.++++-|.+.|+..++-- .-+-.|.+|.+-|.- ++|+.
T Consensus 162 AE~~A~~~gIsRe~qD~~A~-~Sh~rA~~A~~~G~f~~EIvP 202 (417)
T PRK06025 162 GDAIATMEGITREALDALGL-ESQRRAARAIKEGRFDKSLVP 202 (417)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCHHHEEE
T ss_conf 99999986979999999999-999999999983996221110
No 134
>pfam02803 Thiolase_C Thiolase, C-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase.
Probab=32.82 E-value=38 Score=15.04 Aligned_cols=79 Identities=18% Similarity=0.380 Sum_probs=48.7
Q ss_pred EEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH-----------
Q ss_conf 797665998401220034514677998783189899999999999741157697699993687614678-----------
Q gi|254780272|r 21 MVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAG----------- 89 (216)
Q Consensus 21 ~~~e~~~~~~~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~g----------- 89 (216)
...++.+..-+-+|+| +|+|..|.+.++-...|+ .|+++ +|-.||.+.=|
T Consensus 30 ~lL~r~gl~~~Did~~-------------EinEAFA~~~l~~~~~l~-id~ek-----vN~~GGaiAlGHP~GaSGarlv 90 (123)
T pfam02803 30 KALKKAGLTVNDIDLF-------------EINEAFAAQALAVAKDLG-IDPEK-----VNVNGGAIALGHPLGASGARIL 90 (123)
T ss_pred HHHHHCCCCHHHCCEE-------------EECHHHHHHHHHHHHHCC-CCCCC-----CCCCCCCHHHCCCCCCCHHHHH
T ss_conf 9999829985546645-------------641456777899999719-89201-----4898873442788466248999
Q ss_pred HHHHHHHHHCC--CCEEEEEECCCCCCCCCC
Q ss_conf 99999986448--734899831556652000
Q gi|254780272|r 90 MAIYDTMQFIK--PPISTFCMGQAASMGSLL 118 (216)
Q Consensus 90 laIyD~i~~i~--~~V~Ti~~G~aaS~aslI 118 (216)
..+...++.-. --+.|+|.|--.++|.+|
T Consensus 91 ~~l~~~L~~~~~~~G~as~C~gGG~g~A~ll 121 (123)
T pfam02803 91 VTLLHELKRRGGKYGLATLCIGGGQGVAMII 121 (123)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
T ss_conf 9999999983999999997035560889999
No 135
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit; InterPro: IPR012735 Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex..
Probab=32.78 E-value=38 Score=15.03 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH--HHHHHHHHHHHH
Q ss_conf 899999999999741157697699993687614--678999999864
Q gi|254780272|r 54 HMATLICAQLLFLEAENPQKEISLYINSPGGVV--TAGMAIYDTMQF 98 (216)
Q Consensus 54 ~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v--~~glaIyD~i~~ 98 (216)
.+|+.+|.+|...=.=+.++---++||+-||+- ..++-.-|+++.
T Consensus 232 ~LA~ELvnKLk~~f~W~~~d~y~vLvN~LGGt~~~E~~vF~Ndv~~L 278 (328)
T TIGR02362 232 HLAVELVNKLKLKFRWQKDDHYAVLVNNLGGTTKMEQLVFANDVHEL 278 (328)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999998876414567897079998588887178888777799998
No 136
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=30.97 E-value=41 Score=14.84 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 9999999871999899999724585888899997588644604
Q gi|254780272|r 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLM 206 (216)
Q Consensus 164 ~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~Ii~ 206 (216)
...+.++++.|.+.++..++--+ -+-.+.+|.+-|..++|+.
T Consensus 179 ~tAE~~A~~~gisRe~qD~~A~~-Sh~rA~~A~~~G~f~eivp 220 (426)
T PRK08170 179 QTAEVLAHRFGITREAMDAYAAR-SHQRLAAAQAEGRLKEVVP 220 (426)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHCCCCEEEE
T ss_conf 99999999979799999999997-1999999998099866871
No 137
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=30.85 E-value=30 Score=15.68 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=77.1
Q ss_pred EECCCCC-CCCCHHHHHHCCCEEEEC-------CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-HH----HHH
Q ss_conf 6659984-012200345146779987-------8318989999999999974115769769999368761-46----789
Q gi|254780272|r 24 EQTNRGE-RSYDIYSRLLKERIVFVT-------GQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGV-VT----AGM 90 (216)
Q Consensus 24 e~~~~~~-~~~Di~s~L~~~Riifl~-------g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~-v~----~gl 90 (216)
++-.+|+ +++|+-=+=|..|++-|- +++.|---+-+|..-..| .|.=|+ -+ -=+
T Consensus 13 ~RVQrG~k~AF~lLV~KYQ~kv~~Lv~Ryv~~~~e~~DVAQe~FvkAYRAl-------------~~FRGdsaFYTWLyRI 79 (192)
T TIGR02939 13 ERVQRGEKQAFDLLVRKYQHKVVSLVGRYVRDSEEVEDVAQEAFVKAYRAL-------------ASFRGDSAFYTWLYRI 79 (192)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHH-------------CCCCCCHHHHHHHHHH
T ss_conf 887332235677788999999999998761481003401477899999751-------------2355513678999999
Q ss_pred HHH---HHH--HHCCCCEEE-EEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999---998--644873489-98315566520000246777145544156644125666655541289999999999999
Q gi|254780272|r 91 AIY---DTM--QFIKPPIST-FCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRR 164 (216)
Q Consensus 91 aIy---D~i--~~i~~~V~T-i~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~ 164 (216)
||- |.+ +.=++|+.+ |-.--| =-+..|+.-+=+-.|-..+|-.+..-.+.+...-+ -++| +
T Consensus 80 avNTAKNyLVaq~Rr~p~~dg~~~edA-----E~F~~a~~Lr~~~tPE~~ll~~el~~~v~~a~~aL---PE~L-----r 146 (192)
T TIGR02939 80 AVNTAKNYLVAQGRRPPTSDGVEAEDA-----EQFEEADALRDIDTPERLLLSRELEQTVNKALEAL---PEDL-----R 146 (192)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHH-----HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CHHH-----H
T ss_conf 998877766424798874456760433-----12002676655666167999999999999998617---2678-----7
Q ss_pred HHHHHHHHCCCCHHHHHHHHC------CCCCCCHHHHHHCCC
Q ss_conf 999999871999899999724------585888899997588
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLD------RDHIMSASEACDWGV 200 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~------rD~~lsa~EA~eyGl 200 (216)
..=.+-+--|+++|+|.+.|+ |=+.|-|.||++--|
T Consensus 147 ~Ai~LREleGLSYe~IA~~MdCPvGTVRSRIFRAREAi~~~l 188 (192)
T TIGR02939 147 TAITLRELEGLSYEDIAEIMDCPVGTVRSRIFRAREAIAKRL 188 (192)
T ss_pred HHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 454465126878788873306998862114677589999862
No 138
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit; InterPro: IPR010243 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry describes orthologues of the beta subunit of bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=29.94 E-value=14 Score=17.76 Aligned_cols=19 Identities=32% Similarity=0.421 Sum_probs=10.6
Q ss_pred CHHHHHHHHCCCCCCCHHH
Q ss_conf 9899999724585888899
Q gi|254780272|r 176 TYEEVEKTLDRDHIMSASE 194 (216)
Q Consensus 176 ~~e~i~~~~~rD~~lsa~E 194 (216)
..+-+.+.+.+|.-.+-+|
T Consensus 364 ~~~~~~~tL~kD~~~~~~e 382 (1449)
T TIGR02013 364 ENEYIRNTLEKDPTASEEE 382 (1449)
T ss_pred CHHHHHHHHHCCCCCCHHH
T ss_conf 4279999862278758367
No 139
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=28.44 E-value=34 Score=15.35 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCEE-----ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 6520000246777145-----54415664412566665554128999999999999999999987199989
Q gi|254780272|r 113 SMGSLLLSAGEKGMRF-----ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178 (216)
Q Consensus 113 S~aslIl~aG~~g~R~-----~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e 178 (216)
|+|-+|=.+|-||.|. .-.||-|++.. |+++ ++++..+-+.+.+-..+++|..+|
T Consensus 275 sAg~LIe~aGlKG~~iGga~VS~kHanfivN~------g~At-----a~Di~~Li~~i~~~V~~~~GI~Le 334 (348)
T PRK00046 275 AAGWLIDQCGLKGFQIGGAAVHEQQALVLVNY------GGAT-----GADVLALARHIRQDVREKFGVELE 334 (348)
T ss_pred HHHHHHHHHCCCCCEECCEEECCCCCCEEEEC------CCCC-----HHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 48999998188887037969856788789979------9999-----999999999999999998898004
No 140
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase; InterPro: IPR012790 These proteins are 3-oxoadipate enol-lactonases (also called beta-ketoadipate enol-lactone hydrolase), which catalyse the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047570 3-oxoadipate enol-lactonase activity, 0019614 catechol catabolic process.
Probab=26.77 E-value=33 Score=15.45 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.5
Q ss_pred HCCCCCCEEEEEECCCCC
Q ss_conf 115769769999368761
Q gi|254780272|r 68 AENPQKEISLYINSPGGV 85 (216)
Q Consensus 68 ~~~~~k~I~l~INSpGG~ 85 (216)
...++||.-++|||-|-|
T Consensus 9 G~~~~~P~Lvf~NSLGTD 26 (256)
T TIGR02427 9 GAAAGAPVLVFINSLGTD 26 (256)
T ss_pred CCCCCCCEEEECCCHHCC
T ss_conf 778888678871741044
No 141
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=26.43 E-value=49 Score=14.34 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC
Q ss_conf 999998719998999997245858888999975886
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV 201 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli 201 (216)
.+.++++.|.+.+...+.-- .-+-.|.+|.+-|.-
T Consensus 161 ae~~a~~~~isRe~~D~~A~-~Sh~~A~~A~~~g~f 195 (382)
T PRK07801 161 AELIAEKWNLSREEMERYAL-TSHERAFAAIRAGHF 195 (382)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCC
T ss_conf 99999996989999999999-999999999982862
No 142
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=26.25 E-value=20 Score=16.84 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 6789999998644873489983
Q gi|254780272|r 87 TAGMAIYDTMQFIKPPISTFCM 108 (216)
Q Consensus 87 ~~glaIyD~i~~i~~~V~Ti~~ 108 (216)
..++.+.|-...=+..|||+..
T Consensus 330 eg~~~L~~e~~~e~i~vHT~~y 351 (466)
T COG4809 330 EGAMILLDELGLERIHVHTYGY 351 (466)
T ss_pred HHHHHHHHHCCCCEEEEEEEEE
T ss_conf 9999999863950899987557
No 143
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=25.55 E-value=51 Score=14.24 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEEE
Q ss_conf 999998719998999997245858888999975886-4460
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKVL 205 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~Ii 205 (216)
.+.++++.|.+.|+..++- -.-+-.+.+|.+-|.. |+|+
T Consensus 144 AE~~A~~~gIsRe~qD~~A-~~Sh~rA~~A~~~G~f~~EIv 183 (384)
T PRK07661 144 AEQVAVKYGVSREDQDAFA-VRSHQRAAKALAEGKFADEIV 183 (384)
T ss_pred HHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHCCCCHHCEE
T ss_conf 9999998599999999999-999999999998599622067
No 144
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=25.35 E-value=42 Score=14.78 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEECCC-CCHHHH---HHHHHHHHHCCCCEEEEEECC
Q ss_conf 993687-614678---999999864487348998315
Q gi|254780272|r 78 YINSPG-GVVTAG---MAIYDTMQFIKPPISTFCMGQ 110 (216)
Q Consensus 78 ~INSpG-G~v~~g---laIyD~i~~i~~~V~Ti~~G~ 110 (216)
.|=||| |+..+. ..+++.....+.||-.||+|+
T Consensus 45 iilspGpg~p~~~~~~~~~i~~~~~~~~PiLGIClG~ 81 (187)
T pfam00117 45 IIISPGPGSPGDAGGAIEAIKELRENKIPILGICLGH 81 (187)
T ss_pred EEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 9991998611013458999999997799899998889
No 145
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=25.22 E-value=52 Score=14.20 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=19.1
Q ss_pred EEECCC-CCHHHHHHHHHHHH---HCCCCEEEEEECC
Q ss_conf 993687-61467899999986---4487348998315
Q gi|254780272|r 78 YINSPG-GVVTAGMAIYDTMQ---FIKPPISTFCMGQ 110 (216)
Q Consensus 78 ~INSpG-G~v~~glaIyD~i~---~i~~~V~Ti~~G~ 110 (216)
.|=||| |+..+.-...+.++ ..+.||--||+|.
T Consensus 43 iIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGIClG~ 79 (178)
T cd01744 43 IFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred EEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEECHHH
T ss_conf 9989999995773444999999974699889981217
No 146
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=24.64 E-value=53 Score=14.14 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEE
Q ss_conf 999998719998999997245858888999975886-446
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKV 204 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~I 204 (216)
.+.++++-|.+.|+..++-- .-+..+.+|.+.|.. ++|
T Consensus 159 AE~~A~~ygisRe~qD~~A~-~Sh~~A~~A~~~g~f~~EI 197 (390)
T PRK06504 159 AEMMAKKYGLSKDQLDEYAL-QSHQRAIAATQAGKFKDEI 197 (390)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCCCEE
T ss_conf 99999997959999999999-9999999998748952016
No 147
>KOG1455 consensus
Probab=24.50 E-value=50 Score=14.32 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=16.1
Q ss_pred EEEEECCCCC-----CCCCHHHHHHCCCEEEECCCCCH
Q ss_conf 7976659984-----01220034514677998783189
Q gi|254780272|r 21 MVVEQTNRGE-----RSYDIYSRLLKERIVFVTGQIED 53 (216)
Q Consensus 21 ~~~e~~~~~~-----~~~Di~s~L~~~Riifl~g~I~~ 53 (216)
..-++.++|. .|....+.--+.+++|+.|.=.+
T Consensus 29 ~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~ 66 (313)
T KOG1455 29 ESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEH 66 (313)
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCC
T ss_conf 01377477787677743567899874699997477632
No 148
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=24.14 E-value=50 Score=14.33 Aligned_cols=127 Identities=19% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCHHH--------HHHHHHHHHHCC-
Q ss_conf 01220034514677998783189899999999999741-15769769999368761467--------899999986448-
Q gi|254780272|r 31 RSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEA-ENPQKEISLYINSPGGVVTA--------GMAIYDTMQFIK- 100 (216)
Q Consensus 31 ~~~Di~s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~-~~~~k~I~l~INSpGG~v~~--------glaIyD~i~~i~- 100 (216)
.+||.|+| |||.++=+.+|..-++|.. |..++... -..++|.+... ...|.-+|+-+-
T Consensus 96 GAYDFyqK-----------P~d~d~L~liv~RAf~L~~Le~ENRrL~-~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~ 163 (451)
T TIGR02915 96 GAYDFYQK-----------PIDPDVLKLIVDRAFRLYTLETENRRLQ-SALGGGSTALEGLITSSPGMQKICRTIEKVAP 163 (451)
T ss_pred CCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 75101357-----------8757899999999888888888769987-40688741036522068506789888652120
Q ss_pred CCEEEEEECCCC-----CCCCCCCCCCCCCCEEECCCHHHHHHHH------------HHHH------------HHHH---
Q ss_conf 734899831556-----6520000246777145544156644125------------6666------------5554---
Q gi|254780272|r 101 PPISTFCMGQAA-----SMGSLLLSAGEKGMRFALPNARILLHQP------------SGGF------------SGQA--- 148 (216)
Q Consensus 101 ~~V~Ti~~G~aa-----S~aslIl~aG~~g~R~~~pns~iMiHqp------------s~~~------------~G~~--- 148 (216)
++|+..-+|-.. =+=++=-++-.+.+||+.=||=-.=-+- .+|+ .|+.
T Consensus 164 sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGAFTGA~k~T~GKIE~A~~GTLFLD 243 (451)
T TIGR02915 164 SDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 243 (451)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 00013010466711789998984205789777344416745752466776034101242200347761675068830111
Q ss_pred --HH--HHHHHHHHHHHHHHHHHHH
Q ss_conf --12--8999999999999999999
Q gi|254780272|r 149 --SD--IERHAQDIVKIKRRLNEIY 169 (216)
Q Consensus 149 --~d--i~~~a~el~~~~~~l~~i~ 169 (216)
-| +..|||-+.-+++++.+-+
T Consensus 244 EIGDLP~~LQAKLLRFLQErVIER~ 268 (451)
T TIGR02915 244 EIGDLPLNLQAKLLRFLQERVIERL 268 (451)
T ss_pred CHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 1220676689999987546663105
No 149
>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain. Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=23.83 E-value=47 Score=14.47 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCCCCEE-----ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 66520000246777145-----54415664412566665554128999999999999999999987199989
Q gi|254780272|r 112 ASMGSLLLSAGEKGMRF-----ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178 (216)
Q Consensus 112 aS~aslIl~aG~~g~R~-----~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e 178 (216)
.++|-+|=.+|-||.|. .-.||-|++.. |+++ ++++..+-+.+.+-..+++|..++
T Consensus 36 ~~Ag~LIe~~G~kG~~~G~a~vS~kHanfivN~------g~at-----a~di~~l~~~v~~~V~~~~gI~Le 96 (103)
T pfam02873 36 FAAGWLIEEAGLKGYQIGGAQVSEKHANFIINT------GNAT-----AEDVVDLIRHVRQTVFEKFGIWLE 96 (103)
T ss_pred CCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEC------CCCC-----HHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 739999999687988559988962567189968------9989-----999999999999999998898125
No 150
>KOG0540 consensus
Probab=23.49 E-value=56 Score=14.00 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 783189899999999999741157697699993687----------6146789999998644873489983155665200
Q gi|254780272|r 48 TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSL 117 (216)
Q Consensus 48 ~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG----------G~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~asl 117 (216)
+|-++.+++.....-+-+-.+ -+-|+-+.-|++| |-...|-.+.++...-+.|-.||-.|-+++ |..
T Consensus 362 ~G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y 438 (536)
T KOG0540 362 GGVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNY 438 (536)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCC
T ss_conf 441111444446789998872--48867999735770336224441466530444245454467559999237667-742
Q ss_pred CC----CCCCCCCEEECCCHHHHHH
Q ss_conf 00----2467771455441566441
Q gi|254780272|r 118 LL----SAGEKGMRFALPNARILLH 138 (216)
Q Consensus 118 Il----~aG~~g~R~~~pns~iMiH 138 (216)
=. ..|+ --|+-|||++-+-
T Consensus 439 ~m~sr~~~gd--~~yawP~A~Iavm 461 (536)
T KOG0540 439 AMCSRGYSGD--INYAWPNARIAVM 461 (536)
T ss_pred CCCCCCCCCC--EEEECCCCEEEEC
T ss_conf 0026665786--0587563215531
No 151
>pfam02730 AFOR_N Aldehyde ferredoxin oxidoreductase, N-terminal domain. Aldehyde ferredoxin oxidoreductase (AOR) catalyses the reversible oxidation of aldehydes to their corresponding carboxylic acids with their accompanying reduction of the redox protein ferredoxin. This domain interacts with the tungsten cofactor.
Probab=23.42 E-value=42 Score=14.78 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCCCEEEEEECCCCCHHH-----HHHHHHHHHHCCC----CEEEEEECCCCCC
Q ss_conf 769769999368761467-----8999999864487----3489983155665
Q gi|254780272|r 71 PQKEISLYINSPGGVVTA-----GMAIYDTMQFIKP----PISTFCMGQAASM 114 (216)
Q Consensus 71 ~~k~I~l~INSpGG~v~~-----glaIyD~i~~i~~----~V~Ti~~G~aaS~ 114 (216)
+++|.+|+|+--+=.+.+ |+..+++.+.++. ++.+.|+|.|.-.
T Consensus 113 a~~pvyl~I~~~~V~i~dA~~lwG~~t~et~~~l~~~~g~~~~v~~IGpAGEn 165 (203)
T pfam02730 113 AEKPVYLYIEDGKVEIRDASELWGKGVYETTDALKEELGDKASVACIGPAGEN 165 (203)
T ss_pred CCCCEEEEEECCEEEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEEEECHHHHC
T ss_conf 99988999989989998817825988899999999976898499997137845
No 152
>KOG0935 consensus
Probab=23.01 E-value=30 Score=15.66 Aligned_cols=32 Identities=19% Similarity=0.110 Sum_probs=18.1
Q ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 34514677998783189899999999999741
Q gi|254780272|r 37 SRLLKERIVFVTGQIEDHMATLICAQLLFLEA 68 (216)
Q Consensus 37 s~L~~~Riifl~g~I~~~~a~~iia~Ll~L~~ 68 (216)
+|--+.|..--.-+.+|.--..++++...|-+
T Consensus 9 Nr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs 40 (143)
T KOG0935 9 NRAGKTRLAKWYVQFDDDEKQKLIEEVHALVT 40 (143)
T ss_pred CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 35562210145512696688899999999986
No 153
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=22.42 E-value=59 Score=13.87 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCC-EEE
Q ss_conf 999999987199989999972458588889999758864-460
Q gi|254780272|r 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVD-KVL 205 (216)
Q Consensus 164 ~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD-~Ii 205 (216)
...+.++++.|.+.++..++--+ -+.-|.+|.+-|..+ +|+
T Consensus 174 ~~AE~~A~~~gIsRe~qD~~A~~-Sh~rA~~A~~~G~f~~EIv 215 (405)
T PRK07851 174 QTAENVAQLTGISREEQDEWGVR-SQNRAEEAIANGFFEREIT 215 (405)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHCCCCHHHEE
T ss_conf 99999999869899999999999-9999999886598602145
No 154
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.93 E-value=57 Score=13.96 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 4677998783189899999999999741157697699993687614678999999864487348
Q gi|254780272|r 41 KERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPPIS 104 (216)
Q Consensus 41 ~~Riifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG~v~~glaIyD~i~~i~~~V~ 104 (216)
+.-+|||+ +-+.....++.++.- ..++++- .| |+.+|..+-..-++.+.+|.
T Consensus 63 ~~dvIila--VKP~~~~~vl~~i~~--~~~~~~~---iI-----Si~AGi~i~~l~~~~~~~vv 114 (275)
T PRK06928 63 KCDHSFIC--VPPLAVLPLMKDCAP--VLTPDRH---VV-----SIAAGVSLDDLLEITPGQVS 114 (275)
T ss_pred HCCEEEEE--ECHHHHHHHHHHHHH--HCCCCCE---EE-----EECCCCCHHHHHHHCCCCEE
T ss_conf 49989999--785879999999765--3279968---99-----95699989999975799837
No 155
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=21.69 E-value=30 Score=15.73 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=11.0
Q ss_pred HHHHHHCCCCCEE
Q ss_conf 8999975886446
Q gi|254780272|r 192 ASEACDWGVVDKV 204 (216)
Q Consensus 192 a~EA~eyGliD~I 204 (216)
+.+|+|+|-|||.
T Consensus 145 p~RaLdFGpidEL 157 (162)
T TIGR02951 145 PMRALDFGPIDEL 157 (162)
T ss_pred HHHHHHCCCHHHH
T ss_conf 5767406881787
No 156
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=21.67 E-value=36 Score=15.21 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.4
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 0002467771455441566441256
Q gi|254780272|r 117 LLLSAGEKGMRFALPNARILLHQPS 141 (216)
Q Consensus 117 lIl~aG~~g~R~~~pns~iMiHqps 141 (216)
-||.+|.++.|-+.|++++|+|-..
T Consensus 154 ~ll~ag~~AVr~~~~~~ki~lHl~~ 178 (332)
T pfam07745 154 KLLNSGYWAVKDVNPTIKVMIHLDN 178 (332)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999999999853999739999589
No 157
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.25 E-value=44 Score=14.67 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=28.4
Q ss_pred CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCE
Q ss_conf 145544156644125666655541289999999999999999999871999899999724585888899997588644
Q gi|254780272|r 126 MRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203 (216)
Q Consensus 126 ~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGliD~ 203 (216)
-||.+||+++-||--. .|- ..|..+ .-|.| ..|+++++|.+.||.|.
T Consensus 2 l~~lTPH~kw~IHSt~-------~dn-----------~~mL~L---~rg~P----------~vwinp~DA~~~GI~Dg 48 (141)
T cd02776 2 LNYLTPHGKWSIHSTY-------RDN-----------LLMLRL---QRGGP----------VVWMNPKDAAELGIKDN 48 (141)
T ss_pred CCEECCCCCCCCCCCC-------CCC-----------HHHHHC---CCCCC----------EEEECHHHHHHCCCCCC
T ss_conf 6302799986122615-------088-----------888850---01897----------79999999988699889
No 158
>PRK08234 consensus
Probab=21.07 E-value=63 Score=13.69 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEE
Q ss_conf 9999998719998999997245858888999975886-446
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKV 204 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~I 204 (216)
..+.++++-|.+.|+..++-- .-+..+.+|.+-|.- ++|
T Consensus 167 tAE~~A~~~gIsReeqD~~A~-~Sh~rA~~A~~~G~f~~EI 206 (400)
T PRK08234 167 TAENVAKRFGITREAQDEFAY-ESQMRAKAAMETGRFDDEL 206 (400)
T ss_pred HHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCHHCE
T ss_conf 999999985989999999999-9999999998759841115
No 159
>TIGR00411 redox_disulf_1 redox-active disulfide protein 1; InterPro: IPR004502 This group of proteins includes thioredoxins, glutaredoxins, protein-disulphide isomerases, and others, some of which have several such domains. The sequence of proteins in this group at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although overall the sequence seems closer to thioredoxins. Proteins may be involved in a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=20.94 E-value=44 Score=14.66 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.3
Q ss_pred CCCCCHHHHHHCCCC
Q ss_conf 858888999975886
Q gi|254780272|r 187 DHIMSASEACDWGVV 201 (216)
Q Consensus 187 D~~lsa~EA~eyGli 201 (216)
|.--+.++|++|||-
T Consensus 38 n~~e~~~kA~~yGi~ 52 (82)
T TIGR00411 38 NVMEDLKKALEYGIM 52 (82)
T ss_pred CCCCCHHHHHHCCCC
T ss_conf 245484788751635
No 160
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.90 E-value=46 Score=14.52 Aligned_cols=57 Identities=26% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCC-C---CCE-----EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 5665200002467-7---714-----554415664412566665554128999999999999999999987199989
Q gi|254780272|r 111 AASMGSLLLSAGE-K---GMR-----FALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178 (216)
Q Consensus 111 aaS~aslIl~aG~-~---g~R-----~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e 178 (216)
--|+|-+|=.+|= | |.| ..-.||-|++. .|+++ ++++..+-+.+.+...+++|..+|
T Consensus 284 k~sAg~LId~aGl~KG~kg~~~G~a~VS~kHanfiVN------~G~At-----a~Di~~L~~~ik~~V~~~~GI~Le 349 (359)
T PRK13903 284 KLSAAWLIERAGFGKGYPGAGAAPARLSTKHTLALTN------RGGAT-----AADVVALARTVRDGVRDVFGITLV 349 (359)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEE------CCCCC-----HHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 1328999998487556636873106987777858998------99999-----999999999999999998897436
No 161
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=20.75 E-value=63 Score=13.65 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEEE
Q ss_conf 999998719998999997245858888999975886-4460
Q gi|254780272|r 166 NEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKVL 205 (216)
Q Consensus 166 ~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~Ii 205 (216)
.+.++++.|.+.|+..++-- .-+-.+.+|.+-|.- ++|+
T Consensus 158 AE~~A~~~~isRe~qD~~A~-~Sh~rA~~A~~~G~f~~EIv 197 (399)
T PRK09052 158 AEKVAEQWKVSREDQDAFAL-ESHQKAIAAQQAGEFKDEIT 197 (399)
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCHHHEE
T ss_conf 99999996989999999999-99999999876597532164
No 162
>PRK06689 consensus
Probab=20.73 E-value=64 Score=13.65 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCC-CEEE
Q ss_conf 9999998719998999997245858888999975886-4460
Q gi|254780272|r 165 LNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVV-DKVL 205 (216)
Q Consensus 165 l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA~eyGli-D~Ii 205 (216)
-.+.++++-|.+.|+..++-- .-+-.+.+|.+-|+- |+|+
T Consensus 159 tAE~~A~~~gIsReeqD~~A~-~Sh~rA~~A~~~G~f~~eIv 199 (391)
T PRK06689 159 TAENLVEQYEITREEQDEVAL-RSHTLALKAIESGYFDDQIV 199 (391)
T ss_pred HHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCCCEEE
T ss_conf 999999996989999999999-99999999997499754387
No 163
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.62 E-value=64 Score=13.63 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCCCEE-----ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 66520000246777145-----54415664412566665554128999999999999999999987199989
Q gi|254780272|r 112 ASMGSLLLSAGEKGMRF-----ALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYE 178 (216)
Q Consensus 112 aS~aslIl~aG~~g~R~-----~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e 178 (216)
.+++-+|=.+|-||.|. .-.||-|++. .|+++ ++++..+-+.+.+-..+++|..+|
T Consensus 229 ~~Ag~LIe~~GlKG~~iG~a~vS~kHanfivN------~g~at-----a~dv~~L~~~i~~~V~~~~GI~Le 289 (298)
T PRK13905 229 HFAGKLIDEAGLKGLRIGGAQVSEKHANFIIN------TGGAT-----AADIEDLIELVQKTVKEKSGVELE 289 (298)
T ss_pred CCHHHHHHHCCCCCCEECCEEECCCCCCEEEE------CCCCC-----HHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 60789999708788658798983458858996------89999-----999999999999999998897605
No 164
>pfam06972 DUF1296 Protein of unknown function (DUF1296). This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=20.34 E-value=65 Score=13.60 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=16.7
Q ss_pred HCCC-CHHHHHHHHCCCCCCCHHHHHHC
Q ss_conf 7199-98999997245858888999975
Q gi|254780272|r 172 NCGK-TYEEVEKTLDRDHIMSASEACDW 198 (216)
Q Consensus 172 ~Tg~-~~e~i~~~~~rD~~lsa~EA~ey 198 (216)
-+|. +.++|-..+ +|..|+|.||++-
T Consensus 15 iv~~hSd~eIYa~L-~ecnMDPnEtvqk 41 (60)
T pfam06972 15 VVGKHSDADIYAML-KECNMDPNETVQK 41 (60)
T ss_pred HHCCCCHHHHHHHH-HHHCCCHHHHHHH
T ss_conf 98489789999999-9967986799999
No 165
>PRK05670 anthranilate synthase component II; Provisional
Probab=20.19 E-value=65 Score=13.58 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=18.2
Q ss_pred EEECCC-CCHHHHHHHHHHHHHC--CCCEEEEEECC
Q ss_conf 993687-6146789999998644--87348998315
Q gi|254780272|r 78 YINSPG-GVVTAGMAIYDTMQFI--KPPISTFCMGQ 110 (216)
Q Consensus 78 ~INSpG-G~v~~glaIyD~i~~i--~~~V~Ti~~G~ 110 (216)
.|=||| |+..+.-.....++.. +.||--||+|.
T Consensus 47 iiLS~GPg~P~~~~~~~~~i~~~~~~iPiLGIClG~ 82 (192)
T PRK05670 47 IVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGH 82 (192)
T ss_pred EEECCCCCCHHHCCCHHHHHHHHCCCCCEEEEEHHH
T ss_conf 999999999366055499999734699789984778
Done!