HHsearch results for GI: 254780272 and protein with PDBid: 1vrg_A
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=98.18 E-value=4.2e-05 Score=51.32 Aligned_cols=142 Identities=22% Similarity=0.308 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 83189899999999999741157697699993687----------61467899999986448734899831556652000
Q gi|254780272|r 49 GQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLL 118 (216)
Q Consensus 49 g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG----------G~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~aslI 118 (216)
|.++.+.+.....-+...+. -+-||-.++|+|| |.+..|-.+.+++...+.|+.|+.+|.++|.|.+-
T Consensus 344 G~~~~~~a~Kaarfi~lcd~--~~lPlv~lvDtpGf~~G~~aE~~G~~~~gA~l~~a~a~~~vP~i~vi~gk~~Ggg~~a 421 (527)
T 1vrg_A 344 GVLDIDSSDKAARFIRFLDA--FNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIA 421 (527)
T ss_dssp GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
T ss_conf 88750478999999998514--5986699950688688789999749999999999998389987999868866587761
Q ss_pred CCCC--CCCCEEECCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 0246--7771455441566441256666555-412899999999999999999998719998999997245858888999
Q gi|254780272|r 119 LSAG--EKGMRFALPNARILLHQPSGGFSGQ-ASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195 (216)
Q Consensus 119 l~aG--~~g~R~~~pns~iMiHqps~~~~G~-~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~~rD~~lsa~EA 195 (216)
+++. ....+++.|++++-.=.|.+.+.=- ..+++ .++.-+..++.+.+-|. +.+.+|..|
T Consensus 422 m~~~~~~~d~~~Awp~a~~~vm~pegaa~i~~~~~~~-a~~~~~~~~~~~~~~~~----------------~~~~~~~~a 484 (527)
T 1vrg_A 422 MGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIE-ASSNPEETRRKLIEEYK----------------QQFANPYIA 484 (527)
T ss_dssp TTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHH-HSSCHHHHHHHHHHHHH----------------HHTSSHHHH
T ss_pred CCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH----------------HHHCCHHHH
T ss_conf 0677778888999787718616999999988431211-55798999999999999----------------985799999
Q ss_pred HHCCCCCEEECCCC
Q ss_conf 97588644604542
Q gi|254780272|r 196 CDWGVVDKVLMSRI 209 (216)
Q Consensus 196 ~eyGliD~Ii~~~~ 209 (216)
.+.|+||+||+++.
T Consensus 485 a~~~~iD~VIdP~~ 498 (527)
T 1vrg_A 485 ASRGYVDMVIDPRE 498 (527)
T ss_dssp HHTTSSSEECCGGG
T ss_pred HHCCCCCEEECHHH
T ss_conf 87578881088899