HHsearch results for GI: 254780272 and protein with PDBid: 2gtr_A
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=97.76 E-value=0.00017 Score=47.54 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC------CHHH-------------------HHHHHHHHHHCCCCEE
Q ss_conf 31898999999999997411576976999936876------1467-------------------8999999864487348
Q gi|254780272|r 50 QIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------VVTA-------------------GMAIYDTMQFIKPPIS 104 (216)
Q Consensus 50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG------~v~~-------------------glaIyD~i~~i~~~V~ 104 (216)
.++.++-..+...+-.++.. +.+ -+.|.+.|+ |+.. ...++..|..++.||.
T Consensus 29 al~~~~~~el~~al~~~~~d-~~~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 105 (261)
T 2gtr_A 29 SLNPEVMREVQSALSTAAAD-DSK--LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPII 105 (261)
T ss_dssp EECHHHHHHHHHHHHHHHHS-SCS--CEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCE--EEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 88999999999999998629-976--999978998646688873542211233202478999999887678750999899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r 105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 (216)
Q Consensus 105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~ 184 (216)
..+-|.|.+.|..|.++++ .|++.+++++-+.....|......-. ..+.+ ..| .....+.+
T Consensus 106 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~l~r-----------~~G--~~~a~~l~ 166 (261)
T 2gtr_A 106 VAVNGPAIGLGASILPLCD--VVWANEKAWFQTPYTTFGQSPDGCST----VMFPK-----------IMG--GASANEML 166 (261)
T ss_dssp EEECSCEETHHHHTGGGSS--EEEEETTCEEECCTTTTTCCCCTTHH----HHHHH-----------HHC--HHHHHHHH
T ss_pred EEECCEEEECCCHHHHCHH--HHHHHHHHHHHHHHCCCCCCCCCCHH----HHHHH-----------HCC--CCCCCCCC
T ss_conf 9987814662117530001--41233545655321014777884347----78999-----------819--52224542
Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf 4585888899997588644604542251
Q gi|254780272|r 185 DRDHIMSASEACDWGVVDKVLMSRIDIE 212 (216)
Q Consensus 185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~ 212 (216)
-...-++|+||+++||||+|+.+ .++.
T Consensus 167 l~g~~~~a~eA~~~Glv~~vv~~-~~l~ 193 (261)
T 2gtr_A 167 LSGRKLTAQEACGKGLVSQVFWP-GTFT 193 (261)
T ss_dssp HHCCCEEHHHHHHTTSCSEEECG-GGHH
T ss_pred CCCCCCCHHHHHHCCCEEEEECH-HHHH
T ss_conf 35676778899767973687081-8899