HHsearch results for GI: 254780272 and protein with PDBid: 2gtr_A

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=97.76  E-value=0.00017  Score=47.54  Aligned_cols=140  Identities=19%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC------CHHH-------------------HHHHHHHHHHCCCCEE
Q ss_conf             31898999999999997411576976999936876------1467-------------------8999999864487348
Q gi|254780272|r   50 QIEDHMATLICAQLLFLEAENPQKEISLYINSPGG------VVTA-------------------GMAIYDTMQFIKPPIS  104 (216)
Q Consensus        50 ~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpGG------~v~~-------------------glaIyD~i~~i~~~V~  104 (216)
                      .++.++-..+...+-.++.. +.+  -+.|.+.|+      |+..                   ...++..|..++.||.
T Consensus        29 al~~~~~~el~~al~~~~~d-~~~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI  105 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAAD-DSK--LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPII  105 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHS-SCS--CEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHCC-CCE--EEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             88999999999999998629-976--999978998646688873542211233202478999999887678750999899


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99831556652000024677714554415664412566665554128999999999999999999987199989999972
Q gi|254780272|r  105 TFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL  184 (216)
Q Consensus       105 Ti~~G~aaS~aslIl~aG~~g~R~~~pns~iMiHqps~~~~G~~~di~~~a~el~~~~~~l~~i~a~~Tg~~~e~i~~~~  184 (216)
                      ..+-|.|.+.|..|.++++  .|++.+++++-+.....|......-.    ..+.+           ..|  .....+.+
T Consensus       106 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~----~~l~r-----------~~G--~~~a~~l~  166 (261)
T 2gtr_A          106 VAVNGPAIGLGASILPLCD--VVWANEKAWFQTPYTTFGQSPDGCST----VMFPK-----------IMG--GASANEML  166 (261)
T ss_dssp             EEECSCEETHHHHTGGGSS--EEEEETTCEEECCTTTTTCCCCTTHH----HHHHH-----------HHC--HHHHHHHH
T ss_pred             EEECCEEEECCCHHHHCHH--HHHHHHHHHHHHHHCCCCCCCCCCHH----HHHHH-----------HCC--CCCCCCCC
T ss_conf             9987814662117530001--41233545655321014777884347----78999-----------819--52224542


Q ss_pred             CCCCCCCHHHHHHCCCCCEEECCCCCCC
Q ss_conf             4585888899997588644604542251
Q gi|254780272|r  185 DRDHIMSASEACDWGVVDKVLMSRIDIE  212 (216)
Q Consensus       185 ~rD~~lsa~EA~eyGliD~Ii~~~~e~~  212 (216)
                      -...-++|+||+++||||+|+.+ .++.
T Consensus       167 l~g~~~~a~eA~~~Glv~~vv~~-~~l~  193 (261)
T 2gtr_A          167 LSGRKLTAQEACGKGLVSQVFWP-GTFT  193 (261)
T ss_dssp             HHCCCEEHHHHHHTTSCSEEECG-GGHH
T ss_pred             CCCCCCCHHHHHHCCCEEEEECH-HHHH
T ss_conf             35676778899767973687081-8899