HHsearch results for GI: 254780272 and protein with PDBid: 3gf3_A
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=97.86 E-value=0.00061 Score=43.95 Aligned_cols=150 Identities=12% Similarity=0.154 Sum_probs=89.8
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC----------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998783189899999999999741157697699993687----------6146789999998644873489983155665
Q gi|254780272|r 45 VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG----------GVVTAGMAIYDTMQFIKPPISTFCMGQAASM 114 (216)
Q Consensus 45 ifl~g~I~~~~a~~iia~Ll~L~~~~~~k~I~l~INSpG----------G~v~~glaIyD~i~~i~~~V~Ti~~G~aaS~ 114 (216)
.+++|.++.+.+.....-+..-+. -+-||-.++|.|| |-+..|-.+.+++...+.|+.|+.+|.+++.
T Consensus 383 ~~~~G~l~~~aa~Kaarfi~lcd~--f~lPlv~lvD~pGf~~G~~~E~~Gii~~gA~~~~A~a~a~vP~isvi~rka~Gg 460 (588)
T 3gf3_A 383 VGIGGKLYRQGLIKMNEFVTLCAR--DRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAA 460 (588)
T ss_dssp EEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH
T ss_conf 003786677789999999985154--798769993578877876888714999999999998717999799997875314
Q ss_pred CCCCCCCCCCCC--EEECCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 200002467771--455441--5664412566665554128999999999999---999999987199989999972458
Q gi|254780272|r 115 GSLLLSAGEKGM--RFALPN--ARILLHQPSGGFSGQASDIERHAQDIVKIKR---RLNEIYVKNCGKTYEEVEKTLDRD 187 (216)
Q Consensus 115 aslIl~aG~~g~--R~~~pn--s~iMiHqps~~~~G~~~di~~~a~el~~~~~---~l~~i~a~~Tg~~~e~i~~~~~rD 187 (216)
|.+.+++..-+- .++.|+ +++-.-.|.+.+ ++. ..+++.+..+ ...+..++ .+++.+..+
T Consensus 461 g~~am~~~~~~~d~~~a~~~p~a~~~vm~~ega~-----~i~-~~~e~~~a~~~~~~~~~~~~~-----~~~~~~~~~-- 527 (588)
T 3gf3_A 461 AHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAA-----NAM-YSRKLVKAKKAGEDLQPIIGK-----MNDMIQMYT-- 527 (588)
T ss_dssp HHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHH-----HHH-HHHHHHHC-------CHHHHH-----HHHHHHHHH--
T ss_pred HHHHHCCCCCCCCEEEECCCCCCEEECCCHHHHH-----HHH-HHHHHHHCCCCCCCHHHHHHH-----HHHHHHHHH--
T ss_conf 5665247556886468767887628425899999-----999-999997531677144589999-----999999999--
Q ss_pred CCCCHHHHHHCCCCCEEECCCC
Q ss_conf 5888899997588644604542
Q gi|254780272|r 188 HIMSASEACDWGVVDKVLMSRI 209 (216)
Q Consensus 188 ~~lsa~EA~eyGliD~Ii~~~~ 209 (216)
.-.+|..|-+.|.||+||+++.
T Consensus 528 ~~~~p~~aa~~~~vD~vIdP~~ 549 (588)
T 3gf3_A 528 DKSRPKYCTEKGMVDEIVDMTE 549 (588)
T ss_dssp HTTSHHHHHHTTSSSEECCGGG
T ss_pred HHCCHHHHHHCCCCCEEECHHH
T ss_conf 8469999986578781278399