RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201 Score = 278 bits (712), Expect = 7e-76 Identities = 115/191 (60%), Positives = 152/191 (79%) Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77 LVP V+E+T GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I Sbjct: 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65 Query: 78 YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137 YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I++ Sbjct: 66 YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125 Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197 HQP GGF GQASDIE HA++I++IK RLN++ + G+ E + K DRD+ M A EA Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185 Query: 198 WGVVDKVLMSR 208 +G++D V+ SR Sbjct: 186 YGLIDHVIESR 196 >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A Length = 193 Score = 277 bits (710), Expect = 1e-75 Identities = 125/191 (65%), Positives = 164/191 (85%) Query: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77 LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I L Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61 Query: 78 YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137 YINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+++ Sbjct: 62 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121 Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197 HQP GG+ GQA+DIE HA++I+K+K R+NE+ + G++ E++E+ +RD +SA EA + Sbjct: 122 HQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVE 181 Query: 198 WGVVDKVLMSR 208 +G+VD +L R Sbjct: 182 YGLVDSILTHR 192 >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277 Score = 271 bits (693), Expect = 1e-73 Identities = 116/201 (57%), Positives = 157/201 (78%) Query: 16 LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75 L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I Sbjct: 56 LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115 Query: 76 SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135 +YINSPGGVVTAG+AIYDTMQ+I PI T+C+GQAASMGSLLL+AG GMR +LPN+RI Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175 Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195 ++HQPSGG GQA+DI A++I+K+K++L IY K+ ++ + +E ++RD MS EA Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235 Query: 196 CDWGVVDKVLMSRIDIEEKSK 216 ++G++DKVL+ E Sbjct: 236 QEFGILDKVLVHPPQDGEDEP 256 >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218 Score = 221 bits (563), Expect = 1e-58 Identities = 93/194 (47%), Positives = 139/194 (71%), Gaps = 2/194 (1%) Query: 17 GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76 ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA + AQLLFL+A++ K+I Sbjct: 20 HMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIY 79 Query: 77 LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136 LY+N+PGG V+AG+AI DTM FIK + T MG AASMG+++ S+G KG RF LPNA + Sbjct: 80 LYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYM 139 Query: 137 LHQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194 +HQP GG Q +D+ + ++K + L +I +N G++ E+V +RD+ MSA E Sbjct: 140 IHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQE 199 Query: 195 ACDWGVVDKVLMSR 208 ++G +D+++ + Sbjct: 200 TLEYGFIDEIMANN 213 >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208 Score = 218 bits (557), Expect = 6e-58 Identities = 87/196 (44%), Positives = 128/196 (65%), Gaps = 2/196 (1%) Query: 22 VVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80 + ++G D +Y RLL ERI+F+ ++ D +A +CAQ+L L AE+ K+ISLYIN Sbjct: 6 DMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYIN 65 Query: 81 SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140 SPGG ++AGMAIYDTM I+T+ MG AASMG LL+AG KG R+ALP+ARIL+HQP Sbjct: 66 SPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP 125 Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200 GG +G A+DI A+ IK+ + + + G+ E +E DRD +A+EA ++G Sbjct: 126 LGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGF 185 Query: 201 VDKVLMSRIDIEEKSK 216 VD ++ +R + +++ Sbjct: 186 VDHII-TRAHVNGEAQ 200 >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215 Score = 193 bits (492), Expect = 2e-50 Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 1/186 (0%) Query: 24 EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83 + + D+ K+RI+++T +I A + +QLL+L+ N +I +YINSPG Sbjct: 21 GHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPG 79 Query: 84 GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143 G + G+AI D +IK I T G ASM S++L++G+KG R +LPN RI++HQP G Sbjct: 80 GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGN 139 Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203 G DIE ++I+ +K+ L +T E +EK DRD+ M+A EA +G++D+ Sbjct: 140 AFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDE 199 Query: 204 VLMSRI 209 V+ +++ Sbjct: 200 VIETKL 205 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Length = 230 Score = 104 bits (259), Expect = 2e-23 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 10/184 (5%) Query: 37 SRLLKERIVFV---TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93 S +L + IV+V GQI + + E +N + I + +++PGG A M I Sbjct: 2 SPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNA-EAIIIELDTPGGRADAMMNIV 60 Query: 94 DTMQFIKPPISTFC---MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150 +Q K P+ + AAS G+ + P I +P G+S S Sbjct: 61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILGYSQNGSI 118 Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210 IE I + + G+ E+ + +D ++ EA +GV++ V + Sbjct: 119 IEAPPA-ITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINE 177 Query: 211 IEEK 214 + +K Sbjct: 178 LLKK 181 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.8 bits (116), Expect = 1e-06 Identities = 44/250 (17%), Positives = 70/250 (28%), Gaps = 103/250 (41%) Query: 2 SFEGCAKKDSEDVF-LG-----------LVPMVVEQT---NRGERSYDIYSRLLKERIVF 46 SF +K +F +G L P ++E + N G S +L Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-----MLS----- 340 Query: 47 VTG----QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102 ++ Q++D++ L Q EISL +N +V +G PP Sbjct: 341 ISNLTQEQVQDYVNK--TNSHL---PAGKQVEISL-VNGAKNLVVSG-----------PP 383 Query: 103 IS--TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE-R--- 153 S + A G L +RI P FS + R Sbjct: 384 QSLYGLNLTLRKAKAPSG--------------LDQSRI----P---FSERKLKFSNRFLP 422 Query: 154 -----H------AQDIVKIKRRLNEIYVKNCGK--------TY-----EEVEKTLDRDHI 189 H A D I + L + V K T+ + ++ + Sbjct: 423 VASPFHSHLLVPASD--LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480 Query: 190 -MSASEACDW 198 W Sbjct: 481 DCIIRLPVKW 490 Score = 47.2 bits (112), Expect = 3e-06 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 58/184 (31%) Query: 15 FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVT---GQIEDHMATLICAQLLFLEAENP 71 FLG V +VE + G+ + + L E F + H L A+LL E + Sbjct: 64 FLGYVSSLVEPSKVGQFD-QVLNLCLTE---FENCYLEGNDIH--ALA-AKLL-QENDTT 115 Query: 72 QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131 + I + +TA + S S L A +G Sbjct: 116 LVKTKELIKN---YITARIMAKRPF----DKKSN----------SALFRAVGEG------ 152 Query: 132 NARIL-LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 NA+++ + F GQ + + + ++ L ++Y +TY L D I Sbjct: 153 NAQLVAI------FGGQ-GNTDDYFEE-------LRDLY-----QTY----HVLVGDLIK 189 Query: 191 SASE 194 ++E Sbjct: 190 FSAE 193 Score = 34.1 bits (78), Expect = 0.027 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 84/239 (35%) Query: 28 RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87 +G+R + YS ++ E I V G+++ + +F E + S S G+++ Sbjct: 1680 KGKRIRENYSAMIFETI--VDGKLK--------TEKIFKEIN--EHSTSYTFRSEKGLLS 1727 Query: 88 AGMAIYDTMQFIKPPIS--------------------TFC---MGQAASMGSL--LLSAG 122 A QF +P ++ TF +G+ A++ SL ++S Sbjct: 1728 A-------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780 Query: 123 E-------KG--MRFALP-------NARILLHQP---SGGFSGQASDIERHAQDIVKIKR 163 +G M+ A+P N ++ P + FS +A Q +V+ Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA------LQYVVE--- 1831 Query: 164 RLNEIYVKNCGKTYEEVEKTLDRDHIMSASE--ACDWGVVDKVL----MSRIDIEEKSK 216 R+ K G E V ++ ++A + A D V VL + +IDI E K Sbjct: 1832 RVG----KRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTNVLNFIKLQKIDIIELQK 1884 Score = 33.4 bits (76), Expect = 0.044 Identities = 37/210 (17%), Positives = 59/210 (28%), Gaps = 90/210 (42%) Query: 33 YDIYSRLLKERIVFVTGQIEDHMATL---------ICAQLLFLEA--ENPQKE------- 74 Y Y L+ + I F + ++ L + Q L + ENP Sbjct: 177 YQTYHVLVGDLIKFSA----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232 Query: 75 ---ISL----------YI-------NSPG--------------GVVTA-GMAIYDTM-QF 98 IS Y+ +PG G+VTA +A D+ F Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292 Query: 99 IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-------GGFSGQAS-- 149 + ++L G + A PN + PS G S Sbjct: 293 FV--SVRKAI-------TVLFFIGVRCYE-AYPNTSL---PPSILEDSLENNE-GVPSPM 338 Query: 150 ----DIERHA-QDIV-KIKRRLNE---IYV 170 ++ + QD V K L + + Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368 Score = 29.9 bits (67), Expect = 0.43 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 23/91 (25%) Query: 111 AASMGSLLLSAGEKGMRFALP-------NARIL-------LHQPSGGFSGQ---ASDIER 153 A S L LS G + L A L L +P+ GF+ + E Sbjct: 3 AYSTRPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60 Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184 + + + + G +++V Sbjct: 61 VGKFLGYVSSLVEP---SKVG-QFDQVLNLC 87 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Length = 527 Score = 34.3 bits (78), Expect = 0.023 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 2/110 (1%) Query: 83 GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG--MRFALPNARILLHQP 140 GG++ G + P T + +A + + + G M A P+A I + P Sbjct: 386 GGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGP 445 Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 G + + + + +R+L E Y + Y + I Sbjct: 446 EGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.9 bits (71), Expect = 0.11 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 8/28 (28%) Query: 72 QKEISLYIN--SPGGVVTAGMAIYDTMQ 97 Q + LY + +P +AI TM+ Sbjct: 26 QASLKLYADDSAPA------LAIKATME 47 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 Score = 31.6 bits (71), Expect = 0.12 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 2/110 (1%) Query: 83 GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG--MRFALPNARILLHQP 140 GG++ G + P T + +A L + + G +A P+A I + Sbjct: 382 GGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGA 441 Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190 G + + A D ++ E Y Y + D I Sbjct: 442 EGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID 491 >2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* Length = 227 Score = 31.5 bits (71), Expect = 0.16 Identities = 8/78 (10%), Positives = 26/78 (33%) Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 ++ M A +L+ +G D + + I +++ + + + + Sbjct: 20 QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFM 79 Query: 183 TLDRDHIMSASEACDWGV 200 ++R ++ D Sbjct: 80 PVERTDLLELLTQQDKIA 97 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 Score = 27.4 bits (60), Expect = 2.7 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 9/78 (11%) Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 + N+ + ++ G GQ +++ A + + K K Y E + Sbjct: 389 DCTATMKSGNSDVYENEIPG---GQYTNLHFQAHSMGLGSK------FKEVKKAYVEANQ 439 Query: 183 TLDRDHIMSASEACDWGV 200 L ++ S + Sbjct: 440 MLGDLIKVTPSSKIVGDL 457 >1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion precursor, virus/viral protein; HET: NAG BMA MAN; 2.80A {Influenza a virus} SCOP: b.19.1.2 h.3.1.1 Length = 494 Score = 26.2 bits (57), Expect = 5.6 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182 HQ S G +GQA+D++ I +I +LN + ++ + + ++EK Sbjct: 347 HQNSEG-TGQAADLKSTQAAIDQINGKLNRV-IEKTNEKFHQIEK 389 >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 Score = 26.2 bits (58), Expect = 5.8 Identities = 6/27 (22%), Positives = 15/27 (55%) Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216 ++A EA G+V +++ + ++E Sbjct: 171 LTAEEAERVGLVSRIVPAADLLDEALA 197 >2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding subdomain, 5-stranded beta-sheet, OB fold; 2.00A {Enterobacteria phage RB69} SCOP: b.40.4.7 PDB: 2atq_B* 1gpc_A Length = 233 Score = 26.1 bits (57), Expect = 7.3 Identities = 6/22 (27%), Positives = 14/22 (63%) Query: 165 LNEIYVKNCGKTYEEVEKTLDR 186 L+E+ K+ K++EE+ ++ Sbjct: 196 LSEMTSKDKFKSFEELNTKFNQ 217 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0610 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,828,026 Number of extensions: 82023 Number of successful extensions: 251 Number of sequences better than 10.0: 1 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 26 Length of query: 216 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 127 Effective length of database: 3,535,514 Effective search space: 449010278 Effective search space used: 449010278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.2 bits)