RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease
proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural
           genomics, center for structural genomics of infec
           diseases, csgid; 2.29A {Francisella tularensis subsp}
          Length = 201

 Score =  278 bits (712), Expect = 7e-76
 Identities = 115/191 (60%), Positives = 152/191 (79%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVP V+E+T  GER++DIYSRLLKERIVF+ G++ DH A L+ AQLLFLE+E+P K+I  
Sbjct: 6   LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGG+VTAGM +YDTMQFIKP +ST C+G AASMGSLLL+ G KG R++LP+++I++
Sbjct: 66  YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GGF GQASDIE HA++I++IK RLN++   + G+  E + K  DRD+ M A EA  
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185

Query: 198 WGVVDKVLMSR 208
           +G++D V+ SR
Sbjct: 186 YGLIDHVIESR 196


>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP,
           caseinolytic protease, protease TI, heat shock protein
           F21.5, hydrolase; 1.90A {Escherichia coli} SCOP:
           c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A
           2zl3_A
          Length = 193

 Score =  277 bits (710), Expect = 1e-75
 Identities = 125/191 (65%), Positives = 164/191 (85%)

Query: 18  LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
           LVPMV+EQT+RGERS+DIYSRLLKER++F+TGQ+EDHMA LI AQ+LFLEAENP+K+I L
Sbjct: 2   LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61

Query: 78  YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
           YINSPGGV+TAGM+IYDTMQFIKP +ST CMGQAASMG+ LL+AG KG RF LPN+R+++
Sbjct: 62  YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACD 197
           HQP GG+ GQA+DIE HA++I+K+K R+NE+   + G++ E++E+  +RD  +SA EA +
Sbjct: 122 HQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVE 181

Query: 198 WGVVDKVLMSR 208
           +G+VD +L  R
Sbjct: 182 YGLVDSILTHR 192


>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit;
           mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography,
           ATP- dependent protease; HET: FME; 2.10A {Homo sapiens}
           SCOP: c.14.1.1
          Length = 277

 Score =  271 bits (693), Expect = 1e-73
 Identities = 116/201 (57%), Positives = 157/201 (78%)

Query: 16  LGLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEI 75
           L L+P+VVEQT RGER+YDIYSRLL+ERIV V G I+D +A+L+ AQLLFL++E+ +K I
Sbjct: 56  LPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPI 115

Query: 76  SLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARI 135
            +YINSPGGVVTAG+AIYDTMQ+I  PI T+C+GQAASMGSLLL+AG  GMR +LPN+RI
Sbjct: 116 HMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRI 175

Query: 136 LLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEA 195
           ++HQPSGG  GQA+DI   A++I+K+K++L  IY K+  ++ + +E  ++RD  MS  EA
Sbjct: 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEA 235

Query: 196 CDWGVVDKVLMSRIDIEEKSK 216
            ++G++DKVL+      E   
Sbjct: 236 QEFGILDKVLVHPPQDGEDEP 256


>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A
           {Streptococcus pneumoniae} SCOP: c.14.1.1
          Length = 218

 Score =  221 bits (563), Expect = 1e-58
 Identities = 93/194 (47%), Positives = 139/194 (71%), Gaps = 2/194 (1%)

Query: 17  GLVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEIS 76
            ++P+V+EQT+RGERSYDIYSRLLK+RI+ +TG +ED+MA  + AQLLFL+A++  K+I 
Sbjct: 20  HMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIY 79

Query: 77  LYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARIL 136
           LY+N+PGG V+AG+AI DTM FIK  + T  MG AASMG+++ S+G KG RF LPNA  +
Sbjct: 80  LYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYM 139

Query: 137 LHQPSGGFS--GQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASE 194
           +HQP GG     Q +D+    + ++K +  L +I  +N G++ E+V    +RD+ MSA E
Sbjct: 140 IHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQE 199

Query: 195 ACDWGVVDKVLMSR 208
             ++G +D+++ + 
Sbjct: 200 TLEYGFIDEIMANN 213


>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease,
           endopeptidase, ATP-dependent protease, hydrolase; 2.6A
           {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A
           2ce3_A
          Length = 208

 Score =  218 bits (557), Expect = 6e-58
 Identities = 87/196 (44%), Positives = 128/196 (65%), Gaps = 2/196 (1%)

Query: 22  VVEQTNRGERSYD-IYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYIN 80
            +   ++G    D +Y RLL ERI+F+  ++ D +A  +CAQ+L L AE+  K+ISLYIN
Sbjct: 6   DMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYIN 65

Query: 81  SPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQP 140
           SPGG ++AGMAIYDTM      I+T+ MG AASMG  LL+AG KG R+ALP+ARIL+HQP
Sbjct: 66  SPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQP 125

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGV 200
            GG +G A+DI   A+    IK+ +  +  +  G+  E +E   DRD   +A+EA ++G 
Sbjct: 126 LGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGF 185

Query: 201 VDKVLMSRIDIEEKSK 216
           VD ++ +R  +  +++
Sbjct: 186 VDHII-TRAHVNGEAQ 200


>2f6i_A ATP-dependent CLP protease, putative; structural genomics,
           structural genomics consortium, SGC, hydrolase; 2.45A
           {Plasmodium falciparum} SCOP: c.14.1.1
          Length = 215

 Score =  193 bits (492), Expect = 2e-50
 Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 1/186 (0%)

Query: 24  EQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPG 83
              +  +   D+     K+RI+++T +I    A  + +QLL+L+  N   +I +YINSPG
Sbjct: 21  GHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPG 79

Query: 84  GVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGG 143
           G +  G+AI D   +IK  I T   G  ASM S++L++G+KG R +LPN RI++HQP G 
Sbjct: 80  GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGN 139

Query: 144 FSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDK 203
             G   DIE   ++I+ +K+ L         +T E +EK  DRD+ M+A EA  +G++D+
Sbjct: 140 AFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDE 199

Query: 204 VLMSRI 209
           V+ +++
Sbjct: 200 VIETKL 205


>3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea,
           thermostable, catalytic DYAD, hydrolase; 2.30A
           {Pyrococcus horikoshii} PDB: 2deo_A
          Length = 230

 Score =  104 bits (259), Expect = 2e-23
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 10/184 (5%)

Query: 37  SRLLKERIVFV---TGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIY 93
           S +L + IV+V    GQI  +        +   E +N  + I + +++PGG   A M I 
Sbjct: 2   SPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNA-EAIIIELDTPGGRADAMMNIV 60

Query: 94  DTMQFIKPPISTFC---MGQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASD 150
             +Q  K P+  +       AAS G+ +            P   I   +P  G+S   S 
Sbjct: 61  QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHL--IAMAPGTSIGACRPILGYSQNGSI 118

Query: 151 IERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDWGVVDKVLMSRID 210
           IE     I        +   +  G+     E+ + +D  ++  EA  +GV++ V     +
Sbjct: 119 IEAPPA-ITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINE 177

Query: 211 IEEK 214
           + +K
Sbjct: 178 LLKK 181


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 44/250 (17%), Positives = 70/250 (28%), Gaps = 103/250 (41%)

Query: 2   SFEGCAKKDSEDVF-LG-----------LVPMVVEQT---NRGERSYDIYSRLLKERIVF 46
           SF    +K    +F +G           L P ++E +   N G  S      +L      
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-----MLS----- 340

Query: 47  VTG----QIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIKPP 102
           ++     Q++D++        L       Q EISL +N    +V +G           PP
Sbjct: 341 ISNLTQEQVQDYVNK--TNSHL---PAGKQVEISL-VNGAKNLVVSG-----------PP 383

Query: 103 IS--TFCM---GQAASMGSLLLSAGEKGMRFALPNARILLHQPSGGFSGQASDIE-R--- 153
            S     +      A  G              L  +RI    P   FS +      R   
Sbjct: 384 QSLYGLNLTLRKAKAPSG--------------LDQSRI----P---FSERKLKFSNRFLP 422

Query: 154 -----H------AQDIVKIKRRLNEIYVKNCGK--------TY-----EEVEKTLDRDHI 189
                H      A D   I + L +  V    K        T+       +  ++    +
Sbjct: 423 VASPFHSHLLVPASD--LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480

Query: 190 -MSASEACDW 198
                    W
Sbjct: 481 DCIIRLPVKW 490



 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 58/184 (31%)

Query: 15  FLGLVPMVVEQTNRGERSYDIYSRLLKERIVFVT---GQIEDHMATLICAQLLFLEAENP 71
           FLG V  +VE +  G+    + +  L E   F        + H   L  A+LL  E +  
Sbjct: 64  FLGYVSSLVEPSKVGQFD-QVLNLCLTE---FENCYLEGNDIH--ALA-AKLL-QENDTT 115

Query: 72  QKEISLYINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALP 131
             +    I +    +TA +             S           S L  A  +G      
Sbjct: 116 LVKTKELIKN---YITARIMAKRPF----DKKSN----------SALFRAVGEG------ 152

Query: 132 NARIL-LHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
           NA+++ +      F GQ  + + + ++       L ++Y     +TY      L  D I 
Sbjct: 153 NAQLVAI------FGGQ-GNTDDYFEE-------LRDLY-----QTY----HVLVGDLIK 189

Query: 191 SASE 194
            ++E
Sbjct: 190 FSAE 193



 Score = 34.1 bits (78), Expect = 0.027
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 84/239 (35%)

Query: 28   RGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVT 87
            +G+R  + YS ++ E I  V G+++         + +F E    +   S    S  G+++
Sbjct: 1680 KGKRIRENYSAMIFETI--VDGKLK--------TEKIFKEIN--EHSTSYTFRSEKGLLS 1727

Query: 88   AGMAIYDTMQFIKPPIS--------------------TFC---MGQAASMGSL--LLSAG 122
            A        QF +P ++                    TF    +G+ A++ SL  ++S  
Sbjct: 1728 A-------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780

Query: 123  E-------KG--MRFALP-------NARILLHQP---SGGFSGQASDIERHAQDIVKIKR 163
                    +G  M+ A+P       N  ++   P   +  FS +A       Q +V+   
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA------LQYVVE--- 1831

Query: 164  RLNEIYVKNCGKTYEEVEKTLDRDHIMSASE--ACDWGVVDKVL----MSRIDIEEKSK 216
            R+     K  G   E V   ++    ++A +  A D   V  VL    + +IDI E  K
Sbjct: 1832 RVG----KRTGWLVEIVNYNVENQQYVAAGDLRALD--TVTNVLNFIKLQKIDIIELQK 1884



 Score = 33.4 bits (76), Expect = 0.044
 Identities = 37/210 (17%), Positives = 59/210 (28%), Gaps = 90/210 (42%)

Query: 33  YDIYSRLLKERIVFVTGQIEDHMATL---------ICAQLLFLEA--ENPQKE------- 74
           Y  Y  L+ + I F      + ++ L         +  Q L +    ENP          
Sbjct: 177 YQTYHVLVGDLIKFSA----ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232

Query: 75  ---ISL----------YI-------NSPG--------------GVVTA-GMAIYDTM-QF 98
              IS           Y+        +PG              G+VTA  +A  D+   F
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292

Query: 99  IKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILLHQPS-------GGFSGQAS-- 149
                    +       ++L   G +    A PN  +    PS           G  S  
Sbjct: 293 FV--SVRKAI-------TVLFFIGVRCYE-AYPNTSL---PPSILEDSLENNE-GVPSPM 338

Query: 150 ----DIERHA-QDIV-KIKRRLNE---IYV 170
               ++ +   QD V K    L     + +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368



 Score = 29.9 bits (67), Expect = 0.43
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 23/91 (25%)

Query: 111 AASMGSLLLSAGEKGMRFALP-------NARIL-------LHQPSGGFSGQ---ASDIER 153
           A S   L LS G   +   L         A  L       L +P+ GF+      +  E 
Sbjct: 3   AYSTRPLTLSHGS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60

Query: 154 HAQDIVKIKRRLNEIYVKNCGKTYEEVEKTL 184
             + +  +   +        G  +++V    
Sbjct: 61  VGKFLGYVSSLVEP---SKVG-QFDQVLNLC 87


>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP:
           c.14.1.4 c.14.1.4
          Length = 527

 Score = 34.3 bits (78), Expect = 0.023
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG--MRFALPNARILLHQP 140
           GG++  G  +         P  T  + +A     + + +   G  M  A P+A I +  P
Sbjct: 386 GGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGP 445

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            G  +         + +  + +R+L E Y +     Y    +      I 
Sbjct: 446 EGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.11
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 8/28 (28%)

Query: 72 QKEISLYIN--SPGGVVTAGMAIYDTMQ 97
          Q  + LY +  +P       +AI  TM+
Sbjct: 26 QASLKLYADDSAPA------LAIKATME 47


>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
           duplication, multienzyme complex, transcarboxylase; HET:
           MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
           c.14.1.4 c.14.1.4 PDB: 1on9_A*
          Length = 523

 Score = 31.6 bits (71), Expect = 0.12
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 2/110 (1%)

Query: 83  GGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKG--MRFALPNARILLHQP 140
           GG++  G  +         P  T  + +A     L +   + G    +A P+A I +   
Sbjct: 382 GGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGA 441

Query: 141 SGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIM 190
            G  +       + A D   ++    E Y       Y    +    D I 
Sbjct: 442 EGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID 491


>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE;
           2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A*
          Length = 227

 Score = 31.5 bits (71), Expect = 0.16
 Identities = 8/78 (10%), Positives = 26/78 (33%)

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           ++ M      A +L+       +G   D  +  + I   +++ + +  +        +  
Sbjct: 20  QEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFM 79

Query: 183 TLDRDHIMSASEACDWGV 200
            ++R  ++      D   
Sbjct: 80  PVERTDLLELLTQQDKIA 97


>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
           biotin, disease mutation, gluconeogenesis, ligase, lipid
           synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
           PDB: 3bg9_A
          Length = 718

 Score = 27.4 bits (60), Expect = 2.7
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 123 EKGMRFALPNARILLHQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           +        N+ +  ++  G   GQ +++   A  +    +       K   K Y E  +
Sbjct: 389 DCTATMKSGNSDVYENEIPG---GQYTNLHFQAHSMGLGSK------FKEVKKAYVEANQ 439

Query: 183 TLDRDHIMSASEACDWGV 200
            L     ++ S      +
Sbjct: 440 MLGDLIKVTPSSKIVGDL 457


>1ha0_A Protein (hemagglutinin precursor); glycoprotein, membrane-fusion
           precursor, virus/viral protein; HET: NAG BMA MAN; 2.80A
           {Influenza a virus} SCOP: b.19.1.2 h.3.1.1
          Length = 494

 Score = 26.2 bits (57), Expect = 5.6
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 138 HQPSGGFSGQASDIERHAQDIVKIKRRLNEIYVKNCGKTYEEVEK 182
           HQ S G +GQA+D++     I +I  +LN + ++   + + ++EK
Sbjct: 347 HQNSEG-TGQAADLKSTQAAIDQINGKLNRV-IEKTNEKFHQIEK 389


>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
           center for infectious DI enoyl COA, actinobacteria,
           lyase; 1.50A {Mycobacterium smegmatis}
          Length = 263

 Score = 26.2 bits (58), Expect = 5.8
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 190 MSASEACDWGVVDKVLMSRIDIEEKSK 216
           ++A EA   G+V +++ +   ++E   
Sbjct: 171 LTAEEAERVGLVSRIVPAADLLDEALA 197


>2a1k_A GP32 single stranded DNA binding protein; Zn2+ binding subdomain,
           5-stranded beta-sheet, OB fold; 2.00A {Enterobacteria
           phage RB69} SCOP: b.40.4.7 PDB: 2atq_B* 1gpc_A
          Length = 233

 Score = 26.1 bits (57), Expect = 7.3
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 165 LNEIYVKNCGKTYEEVEKTLDR 186
           L+E+  K+  K++EE+    ++
Sbjct: 196 LSEMTSKDKFKSFEELNTKFNQ 217


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,828,026
Number of extensions: 82023
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 26
Length of query: 216
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 127
Effective length of database: 3,535,514
Effective search space: 449010278
Effective search space used: 449010278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)