RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01184

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230
 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQ---- 387
           +  ++  +  G  + +IG +G GK+TL  +++G   P SG + + G+ +     D+    
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 388 SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS---AFNFKGGDQQQRIGSLSGGQR 444
              SL    TV E+I+   D V  +  +   RA      A         +R G LSGG +
Sbjct: 61  QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120

Query: 445 GRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGC-AVIISHD 494
            RV +A+ L     V+LLDEP   LD  T   L++ L           ++++HD
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174