>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 73.6 bits (181), Expect = 1e-13 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 45/238 (18%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT----- 70 +GS +L DI+L+ ++K I+G +G+GKST+ +++ G + +GE L GF+ Sbjct: 485 YGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL-NGFSLKDID 542 Query: 71 -------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 + YLPQEP + S ++ EN+ L+ +++EI Sbjct: 543 RHTLRQFINYLPQEPYI-FSGSILENL----------------LLGAKENVSQDEIWAAC 585 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 +I + K D+E L +S+SGG+K+R+AL + LL+ +L+LDE Sbjct: 586 EIAEIKD--DIENMPLGYQTELSEEG-----SSISGGQKQRIALARALLTDSKVLILDES 638 Query: 184 TNHLDAET---IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238 T++LD T I + L ++ V H R + ++ I+ +D GK I QG++ Sbjct: 639 TSNLDTITEKKI--VNNLLNLQDKTIIFVAH-RLSVAKQSDKIIVLDHGKIIE-QGSH 692

RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01193