RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01194

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 28/187 (14%)

Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLEA 394
           +  ++  G IV ++G NG GK+TL ++  G   P  G I + G  V     D  RD    
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS- 419

Query: 395 EKTVWEDISGGDDIVKLNGHE----INSRAYCSAFNFKGGDQQQRIG-----SLSGGQRG 445
              ++ D    DD++  +  E     N++ Y          + +  G     +LS GQ+ 
Sbjct: 420 --AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477

Query: 446 RVHLAKILKSGGNVILLDEPTNDLD--------TETLSALEDALENFAGCAVIISHDRMF 497
           R+ L         ++L DE   D D         E L  L+   +      +IISHD  +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI----IIISHDDQY 533

Query: 498 L---DRL 501
               D++
Sbjct: 534 FELADQI 540