RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01194
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555
Score = 41.5 bits (97), Expect = 6e-04
Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 47/209 (22%)
Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81
L I+L + I+G NG GKST+ ++ G+ Y+PQE ++
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------------YIPQEGEI- 399
Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMM----------NYSEKTEEEIAKLQDIIDSKGL 131
+++G A D Y +L + E E A L + + L
Sbjct: 400 --------LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNA--QQYL 449
Query: 132 WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA-- 189
LE +V IE T+LS G+++R+AL L +LL DE D
Sbjct: 450 QRLEIADKVKIEDGGFS----TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505
Query: 190 ETIAWMEKY--LREYSGAVLMVTH-DRYF 215
+ + E L+ +++++H D+YF
Sbjct: 506 KRFFYEELLPDLKRQGKTIIIISHDDQYF 534