RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01257

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 330  RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR 389
            R  +D L+       I   +G NGAGKTT   +LTG   P SGT+ VG     + +D  R
Sbjct: 943  RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002

Query: 390  DSL---EAEKTVWEDISGGDDIV---KLNGH-------EINSRAYCSAFNFKGGDQQQRI 436
             SL        ++  ++  + I+   +L G        E+ +    +  + K  ++ Q  
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-- 1060

Query: 437  GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISHDR 495
              LSGG + ++ +A        V++LDEPT+ +D  +  ++ D L  + +G  +I+S   
Sbjct: 1061 -DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH 1119

Query: 496  M 496
            M
Sbjct: 1120 M 1120