RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR01842
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
Score = 78.2 bits (193), Expect = 5e-15
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 40/209 (19%)
Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373
GH+ +E I + + +SF+L G + +IGP+G+GK+TL R++ G P SG+
Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 374 IHV-------------GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIV---------KL 411
+ + G+ + Y+ Q + TV E+I+ + KL
Sbjct: 375 VRLDGADLKQWDRETFGKHI--GYLPQDVELFPG--TVAENIARFGENADPEKIIEAAKL 430
Query: 412 NG-HEINSR---AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467
G HE+ R Y + G +LSGGQR R+ LA+ L +++LDEP +
Sbjct: 431 AGVHELILRLPDGYDTVIGPGG-------ATLSGGQRQRIALARALYGDPKLVVLDEPNS 483
Query: 468 DLDTETLSALEDALENF---AGCAVIISH 493
+LD E AL +A++ V+I+H
Sbjct: 484 NLDEEGEQALANAIKALKARGITVVVITH 512