RPSBLAST alignment for GI: 254780273 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 96.5 bits (241), Expect = 1e-20
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 45/229 (19%)
Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF-------- 69
LD+++L+ P K+ I+G G+GKST+L+++ G+ + G + L G
Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPA 535
Query: 70 ----TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125
+GY+PQ+P+L T+++NI G + D E ++ +E +A + +
Sbjct: 536 DLRRNIGYVPQDPRL-FYGTLRDNIALGAPY---ADD---EEILRAAE-----LAGVTEF 583
Query: 126 IDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183
+ GL ++Q+ G SLSGG+++ VAL + LL P +LLLDEP
Sbjct: 584 VRRHPDGL-----DMQIG-------ERGR---SLSGGQRQAVALARALLRDPPILLLDEP 628
Query: 184 TNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230
T+ +D + + L+ + +++VTH LD V I+ +D G+
Sbjct: 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR-IIVMDNGR 676